Wall clock time and date at job start Tue Mar 31 2020 23:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34334 * 126.44346 * 2 1 4 4 N 1.34477 * 107.66590 * 180.02562 * 3 2 1 5 5 C 1.30248 * 108.70437 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.62368 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.47058 * 90.02751 * 6 5 4 8 8 C 1.42897 * 114.00417 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47514 * 180.02562 * 8 7 6 10 10 O 1.21286 * 119.99666 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00098 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99814 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.45207 * 35.03409 * 12 11 9 14 14 C 1.53044 * 109.46096 * 275.06652 * 12 11 9 15 15 C 1.53192 * 109.30981 * 178.61762 * 14 12 11 16 16 N 1.46918 * 108.77961 * 54.63433 * 15 14 12 17 17 C 1.36942 * 120.63083 * 126.66478 * 16 15 14 18 18 H 1.08006 * 120.00049 * 331.60340 * 17 16 15 19 19 C 1.38805 * 120.00309 * 151.60628 * 17 16 15 20 20 N 1.31622 * 119.99962 * 343.11515 * 19 17 16 21 21 Si 1.86795 * 120.00332 * 163.11972 * 19 17 16 22 22 H 1.48504 * 109.47268 * 89.99585 * 21 19 17 23 23 H 1.48502 * 109.47416 * 209.99914 * 21 19 17 24 24 H 1.48507 * 109.47127 * 329.99639 * 21 19 17 25 25 C 1.46921 * 118.74128 * 306.39349 * 16 15 14 26 26 C 1.53047 * 109.46028 * 154.99971 * 12 11 9 27 27 H 1.09004 * 109.52182 * 61.41643 * 26 12 11 28 28 O 1.42900 * 109.49756 * 301.33996 * 26 12 11 29 29 O 1.33966 * 108.76162 * 0.23170 * 5 4 3 30 30 H 1.08995 * 109.47772 * 89.99895 * 1 2 3 31 31 H 1.08997 * 109.47152 * 210.00422 * 1 2 3 32 32 H 1.09006 * 109.46787 * 330.00002 * 1 2 3 33 33 H 1.08001 * 126.16900 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.46948 * 330.03226 * 6 5 4 35 35 H 1.08999 * 109.47423 * 210.02551 * 6 5 4 36 36 H 1.08999 * 109.47433 * 59.99649 * 8 7 6 37 37 H 1.09003 * 109.46606 * 300.00019 * 8 7 6 38 38 H 0.96998 * 120.00276 * 359.97438 * 11 9 8 39 39 H 1.08993 * 109.49625 * 298.56715 * 14 12 11 40 40 H 1.08994 * 109.49634 * 58.63062 * 14 12 11 41 41 H 1.08999 * 109.59077 * 294.84222 * 15 14 12 42 42 H 1.09008 * 109.58009 * 174.42595 * 15 14 12 43 43 H 0.96995 * 120.00418 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58788 * 173.39325 * 25 16 15 45 45 H 1.09005 * 109.58640 * 293.67568 * 25 16 15 46 46 H 0.96695 * 113.99987 * 180.16034 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 -0.0006 5 6 3.5765 -0.6547 -0.0004 6 6 4.8003 -1.5341 -0.0014 7 8 5.1881 -1.8123 1.3456 8 6 6.3453 -2.6430 1.4576 9 6 6.6615 -2.8707 2.9134 10 8 5.9646 -2.3703 3.7706 11 7 7.7186 -3.6303 3.2626 12 6 8.0261 -3.8510 4.6778 13 1 7.0979 -3.9104 5.2461 14 6 8.8720 -2.6888 5.2031 15 6 9.1625 -2.9058 6.6915 16 7 9.7795 -4.2279 6.8651 17 6 10.9690 -4.3608 7.5304 18 1 11.6799 -3.5476 7.5334 19 6 11.2613 -5.5405 8.2008 20 7 10.2985 -6.3917 8.4853 21 14 13.0211 -5.9203 8.6992 22 1 13.2795 -5.3761 10.0565 23 1 13.2267 -7.3910 8.7081 24 1 13.9561 -5.2957 7.7292 25 6 9.0930 -5.4054 6.3166 26 6 8.8032 -5.1604 4.8325 27 1 9.7431 -5.0931 4.2846 28 8 8.0252 -6.2409 4.3137 29 8 2.3075 -1.0840 -0.0048 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.9822 2.1113 -0.0004 34 1 5.6143 -1.0231 -0.5156 35 1 4.5758 -2.4687 -0.5152 36 1 7.1913 -2.1549 0.9737 37 1 6.1532 -3.6008 0.9738 38 1 8.2757 -4.0308 2.5770 39 1 9.8112 -2.6442 4.6519 40 1 8.3278 -1.7538 5.0707 41 1 8.2313 -2.8602 7.2561 42 1 9.8457 -2.1342 7.0467 43 1 10.5026 -7.2159 8.9541 44 1 9.7302 -6.2831 6.4245 45 1 8.1572 -5.5652 6.8523 46 1 8.4561 -7.1039 4.3814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099914284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:21 Heat of formation + Delta-G solvation = -108.956955 kcal Electronic energy + Delta-G solvation = -29024.845546 eV Core-core repulsion = 24723.211032 eV Total energy + Delta-G solvation = -4301.634514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.40329 -41.15542 -39.65695 -38.57562 -36.88545 -35.85620 -35.80258 -34.01465 -33.71149 -31.64370 -30.66520 -30.34155 -28.48864 -26.74486 -26.04197 -24.13770 -23.46048 -23.39242 -22.18678 -21.59718 -21.12071 -19.07531 -18.61304 -18.30931 -18.09006 -17.75891 -17.56501 -17.25693 -16.92168 -16.48197 -16.04622 -15.77722 -15.60293 -15.40990 -15.22419 -14.95613 -14.73343 -14.39059 -14.16506 -13.89031 -13.86263 -13.60752 -13.36651 -13.29580 -13.15621 -13.04782 -12.99097 -12.65637 -12.53598 -12.45803 -12.09488 -12.02972 -11.88708 -11.65673 -11.39947 -11.00506 -10.89566 -10.80288 -10.60685 -10.06873 -9.77177 -8.76437 -7.91075 -5.38932 0.22993 1.35358 1.48717 1.50303 1.60171 1.60256 1.63111 1.95562 2.49737 2.82192 3.11396 3.24855 3.33558 3.62575 3.72083 3.77783 3.92502 4.00537 4.05484 4.09333 4.19760 4.23890 4.30679 4.33300 4.41518 4.45891 4.48884 4.62043 4.66087 4.70686 4.88155 4.93790 4.98580 5.03514 5.13536 5.15551 5.25449 5.31961 5.45595 5.56240 5.63747 5.84296 6.33146 6.59300 6.62272 6.84119 7.09836 7.27794 7.76817 8.30327 9.15706 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.001826 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.316505 B =15333.497474 C =15502.908765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.041 4.041 3 C -0.067 4.067 4 N -0.490 5.490 5 C 0.166 3.834 6 C 0.160 3.840 7 O -0.399 6.399 8 C 0.053 3.947 9 C 0.505 3.495 10 O -0.582 6.582 11 N -0.698 5.698 12 C 0.171 3.829 13 H 0.050 0.950 14 C -0.122 4.122 15 C 0.140 3.860 16 N -0.603 5.603 17 C -0.266 4.266 18 H 0.073 0.927 19 C -0.048 4.048 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.266 1.266 25 C 0.156 3.844 26 C 0.095 3.905 27 H 0.073 0.927 28 O -0.573 6.573 29 O -0.210 6.210 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.418 0.582 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.004 0.996 42 H 0.067 0.933 43 H 0.252 0.748 44 H 0.072 0.928 45 H -0.008 1.008 46 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 7.710 -24.536 28.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.205 4.205 4 N -0.221 5.221 5 C -0.041 4.041 6 C 0.083 3.917 7 O -0.317 6.317 8 C -0.025 4.025 9 C 0.292 3.708 10 O -0.462 6.462 11 N -0.351 5.351 12 C 0.065 3.935 13 H 0.068 0.932 14 C -0.163 4.163 15 C 0.014 3.986 16 N -0.328 5.328 17 C -0.396 4.396 18 H 0.091 0.909 19 C -0.244 4.244 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.191 1.191 25 C 0.029 3.971 26 C 0.034 3.966 27 H 0.090 0.910 28 O -0.380 6.380 29 O -0.097 6.097 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.227 0.773 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.255 0.745 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.022 0.978 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.010 0.990 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.745 8.758 -23.827 28.405 hybrid contribution 0.730 -1.376 0.841 1.770 sum -12.015 7.382 -22.986 26.966 Atomic orbital electron populations 1.20554 0.80654 1.05778 1.05472 1.24444 0.96881 0.83833 1.04223 1.23639 0.87049 1.02057 1.07785 1.70379 1.24882 1.09899 1.16988 1.26180 0.84748 0.90277 1.02856 1.20820 0.88721 0.97776 0.84367 1.88015 1.46819 1.70648 1.26255 1.22395 0.90078 0.97955 0.92080 1.21034 0.79895 0.77918 0.91976 1.90730 1.50909 1.50758 1.53759 1.45688 1.30035 1.51298 1.08058 1.20627 0.97309 0.93520 0.82019 0.93198 1.22192 0.99826 0.97021 0.97217 1.21042 0.95632 0.88106 0.93802 1.44261 1.23137 1.01782 1.63636 1.19550 0.93245 1.01331 1.25468 0.90939 1.25866 1.01291 0.99170 0.98060 1.70189 1.32104 1.12166 1.43692 0.85232 0.80139 0.76714 0.78050 1.21534 1.21740 1.19068 1.21238 0.94671 0.91547 0.89679 1.22524 0.92900 0.85950 0.95253 0.90968 1.86388 1.48425 1.19204 1.83958 1.84394 1.18117 1.37668 1.69558 0.87588 0.89988 0.86662 0.77285 0.86094 0.86770 0.85685 0.85984 0.74493 0.90139 0.91496 0.97793 0.91462 0.93898 0.90985 0.99022 0.75775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.43 71.23 0.74 0.20 16 2 C -0.04 -0.74 7.39 24.79 0.18 -0.56 16 3 C -0.07 -1.33 11.80 83.40 0.98 -0.34 16 4 N -0.49 -12.59 11.29 -303.83 -3.43 -16.02 16 5 C 0.17 3.91 7.97 88.34 0.70 4.61 16 6 C 0.16 2.62 6.56 71.24 0.47 3.09 16 7 O -0.40 -9.86 9.86 -129.94 -1.28 -11.14 16 8 C 0.05 0.94 6.42 71.24 0.46 1.39 16 9 C 0.50 14.76 7.87 87.66 0.69 15.45 16 10 O -0.58 -24.28 16.16 15.99 0.26 -24.02 16 11 N -0.70 -18.54 4.92 -442.40 -2.18 -20.71 16 12 C 0.17 6.03 2.12 45.02 0.10 6.12 16 13 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 14 C -0.12 -4.33 5.65 30.67 0.17 -4.16 16 15 C 0.14 6.04 6.51 86.36 0.56 6.60 16 16 N -0.60 -29.81 2.99 -699.12 -2.09 -31.91 16 17 C -0.27 -14.17 9.58 84.03 0.81 -13.36 16 18 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 19 C -0.05 -2.61 4.92 84.86 0.42 -2.19 16 20 N -0.94 -53.98 11.20 21.65 0.24 -53.73 16 21 Si 0.97 43.15 29.59 68.60 2.03 45.18 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 C 0.16 7.29 4.92 86.36 0.42 7.72 16 26 C 0.09 3.36 3.14 30.67 0.10 3.45 16 27 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 28 O -0.57 -18.08 13.16 -148.98 -1.96 -20.04 16 29 O -0.21 -4.88 10.78 -3.72 -0.04 -4.92 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.42 7.75 8.60 -92.71 -0.80 6.95 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.07 2.76 7.93 -2.38 -0.02 2.74 16 43 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 44 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 45 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 46 H 0.39 9.64 9.08 -74.06 -0.67 8.97 16 Total: -1.00 -84.77 387.78 -2.10 -86.87 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.45 Total: 22.42 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 6.80 Total: 28.02 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -7.46 Total: -122.37 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -3.02 Total: -60.12 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -84.77 -2.10 -86.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099914284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.086 kcal (2) G-P(sol) polarization free energy of solvation -84.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds