Wall clock time and date at job start Tue Mar 31 2020 23:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00093 * 2 1 4 4 C 1.50697 * 109.47351 * 179.97438 * 3 2 1 5 5 N 1.30014 * 127.33544 * 90.02365 * 4 3 2 6 6 O 1.20658 * 112.30196 * 179.97438 * 5 4 3 7 7 C 1.33492 * 113.15835 * 359.97438 * 6 5 4 8 8 C 1.37366 * 106.33928 * 0.02562 * 7 6 5 9 9 C 1.47401 * 128.56416 * 179.97438 * 8 7 6 10 10 O 1.21603 * 119.99948 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99781 * 0.02562 * 9 8 7 12 12 C 1.46501 * 119.99940 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47162 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.51249 * 59.99989 * 13 12 11 15 15 C 1.53298 * 109.51004 * 180.10242 * 13 12 11 16 16 N 1.47148 * 108.38317 * 172.22644 * 15 13 12 17 17 C 1.36944 * 120.98198 * 129.44113 * 16 15 13 18 18 H 1.08005 * 119.99659 * 206.24038 * 17 16 15 19 19 C 1.38806 * 119.99847 * 26.24046 * 17 16 15 20 20 N 1.31622 * 120.00461 * 16.91297 * 19 17 16 21 21 Si 1.86803 * 119.99884 * 196.91217 * 19 17 16 22 22 H 1.48501 * 109.47079 * 59.99893 * 21 19 17 23 23 H 1.48503 * 109.47126 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46993 * 300.00002 * 21 19 17 25 25 C 1.47149 * 118.03962 * 309.46570 * 16 15 13 26 26 C 1.53302 * 108.38349 * 50.53030 * 25 16 15 27 27 O 1.42955 * 109.26588 * 307.72863 * 26 25 16 28 28 H 1.08997 * 109.47248 * 60.00492 * 1 2 3 29 29 H 1.09008 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47534 * 299.99968 * 1 2 3 31 31 H 1.08998 * 109.47076 * 59.99398 * 3 2 1 32 32 H 1.09003 * 109.46742 * 299.99841 * 3 2 1 33 33 H 1.07997 * 126.83233 * 179.97438 * 7 6 5 34 34 H 0.97005 * 120.00533 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47110 * 300.00390 * 12 11 9 36 36 H 1.09001 * 109.46890 * 59.99918 * 12 11 9 37 37 H 1.09006 * 109.46944 * 60.00021 * 14 13 12 38 38 H 1.09003 * 109.46854 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47357 * 299.99920 * 14 13 12 40 40 H 1.08997 * 109.67861 * 291.94641 * 15 13 12 41 41 H 1.08995 * 109.68531 * 52.46471 * 15 13 12 42 42 H 0.96996 * 120.00005 * 180.02562 * 20 19 17 43 43 H 1.08992 * 109.68592 * 170.25908 * 25 16 15 44 44 H 1.09007 * 109.67631 * 290.81371 * 25 16 15 45 45 H 1.09000 * 109.50610 * 67.62702 * 26 25 16 46 46 H 1.09004 * 109.50773 * 187.72741 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2990 1.1245 -1.0328 6 8 5.4605 1.0329 -0.7193 7 6 5.6481 1.0187 0.6023 8 6 4.4014 1.1168 1.1706 9 6 4.0428 1.1449 2.6001 10 8 2.8767 1.2362 2.9327 11 7 5.0073 1.0695 3.5384 12 6 4.6509 1.0970 4.9591 13 6 5.9216 0.9984 5.8057 14 6 6.8403 2.1799 5.4880 15 6 5.5494 1.0244 7.2926 16 7 6.7604 0.7411 8.0790 17 6 7.1329 1.5531 9.1170 18 1 8.1713 1.6169 9.4069 19 6 6.1758 2.2940 9.7965 20 7 4.9015 1.9838 9.6846 21 14 6.6961 3.7316 10.8698 22 1 7.4060 4.7377 10.0396 23 1 5.4942 4.3531 11.4816 24 1 7.6020 3.2465 11.9419 25 6 7.5596 -0.4402 7.7170 26 6 7.8338 -0.3949 6.2094 27 8 6.5984 -0.2256 5.5102 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 6.5921 0.9440 1.1214 34 1 5.9376 0.9971 3.2731 35 1 4.1348 2.0298 5.1863 36 1 3.9966 0.2552 5.1858 37 1 6.3242 3.1128 5.7152 38 1 7.7450 2.1092 6.0918 39 1 7.1059 2.1597 4.4310 40 1 5.1620 2.0084 7.5568 41 1 4.7936 0.2658 7.4952 42 1 4.2328 2.5018 10.1591 43 1 8.5032 -0.4262 8.2623 44 1 7.0065 -1.3468 7.9625 45 1 8.4959 0.4413 5.9848 46 1 8.3051 -1.3268 5.8970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108339050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:10 Heat of formation + Delta-G solvation = -52.971410 kcal Electronic energy + Delta-G solvation = -30298.065777 eV Core-core repulsion = 25998.858978 eV Total energy + Delta-G solvation = -4299.206798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.07902 -41.11625 -40.13402 -38.96122 -36.55345 -35.94557 -35.11324 -33.72575 -33.19352 -32.61205 -29.56972 -29.42458 -28.11347 -27.60256 -26.72284 -25.30586 -24.92306 -22.90894 -22.44889 -21.60925 -20.36946 -19.46756 -18.91574 -18.86720 -17.99333 -17.43925 -17.35798 -16.97711 -16.86318 -16.69348 -16.32766 -16.10175 -15.90674 -15.55611 -15.44273 -15.24252 -14.81785 -14.61167 -14.39780 -13.97810 -13.59116 -13.42816 -13.38065 -13.16233 -12.88950 -12.73763 -12.57281 -12.55140 -12.49543 -12.41817 -12.16960 -11.92729 -11.82808 -11.39268 -11.29692 -11.06542 -10.86669 -10.77738 -10.72451 -10.47051 -10.16439 -8.69607 -7.87942 -5.34488 0.03763 0.49047 1.47928 1.49603 1.56493 1.77866 2.06701 2.19830 2.49680 2.64322 2.81627 3.03036 3.26559 3.35898 3.52382 3.72846 3.85807 3.98707 4.04676 4.12950 4.14152 4.25679 4.45260 4.45809 4.50235 4.50454 4.58861 4.60936 4.63477 4.70173 4.75655 4.79035 4.82905 5.00718 5.07729 5.15366 5.24160 5.28904 5.41115 5.56823 5.63714 6.01058 6.31314 6.39644 6.44348 7.07019 7.09088 7.11173 7.78706 8.32133 9.17390 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.002636 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.586192 B =10617.851134 C =11280.298593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.141 3.859 4 C 0.044 3.956 5 N -0.355 5.355 6 O 0.114 5.886 7 C 0.036 3.964 8 C -0.265 4.265 9 C 0.593 3.407 10 O -0.570 6.570 11 N -0.692 5.692 12 C 0.151 3.849 13 C 0.095 3.905 14 C -0.155 4.155 15 C 0.167 3.833 16 N -0.607 5.607 17 C -0.259 4.259 18 H 0.074 0.926 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.274 1.274 23 H -0.299 1.299 24 H -0.277 1.277 25 C 0.100 3.900 26 C 0.054 3.946 27 O -0.384 6.384 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.281 0.719 34 H 0.416 0.584 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.067 0.933 41 H -0.009 1.009 42 H 0.250 0.750 43 H 0.071 0.929 44 H 0.010 0.990 45 H 0.064 0.936 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -0.894 -20.590 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.064 3.936 4 C -0.118 4.118 5 N -0.060 5.060 6 O 0.051 5.949 7 C -0.045 4.045 8 C -0.273 4.273 9 C 0.380 3.620 10 O -0.451 6.451 11 N -0.345 5.345 12 C 0.027 3.973 13 C 0.053 3.947 14 C -0.212 4.212 15 C 0.040 3.960 16 N -0.331 5.331 17 C -0.388 4.388 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.793 3.207 22 H -0.200 1.200 23 H -0.225 1.225 24 H -0.203 1.203 25 C -0.025 4.025 26 C -0.024 4.024 27 O -0.303 6.303 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.297 0.703 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.009 0.991 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.083 0.917 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.819 -1.054 -21.684 21.785 hybrid contribution -0.187 0.864 2.265 2.431 sum 1.633 -0.191 -19.418 19.488 Atomic orbital electron populations 1.22964 0.78403 1.04210 1.01183 1.87856 1.22295 1.27071 1.95691 1.20597 0.84270 0.85954 1.02821 1.24596 0.98015 1.01859 0.87365 1.73669 0.90171 1.18503 1.23686 1.84570 1.20696 1.65592 1.24089 1.27302 1.00791 0.93747 0.82678 1.22162 0.94305 1.16573 0.94275 1.17051 0.85026 0.76070 0.83862 1.90783 1.20138 1.51551 1.82597 1.45497 1.10278 1.73549 1.05128 1.21083 0.95320 1.01946 0.78981 1.22173 0.91901 0.85782 0.94804 1.22136 1.00189 0.96769 1.02092 1.21057 0.87818 0.99685 0.87449 1.44245 1.27326 1.26894 1.34612 1.19468 0.92377 1.18727 1.08265 0.90859 1.25771 0.95520 1.03322 0.99868 1.70175 1.00771 1.40832 1.46430 0.85378 0.76620 0.79883 0.78787 1.19984 1.22504 1.20259 1.21840 0.95679 0.88830 0.96193 1.23106 0.85549 1.02708 0.90997 1.87823 1.36674 1.39017 1.66792 0.91949 0.88195 0.93558 0.90385 0.89672 0.70344 0.74547 0.90498 0.92597 0.92672 0.91958 0.89767 0.91480 0.99127 0.94110 0.91044 0.97203 0.91750 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.94 10.69 -148.98 -1.59 -12.53 16 3 C 0.14 3.41 6.19 71.23 0.44 3.85 16 4 C 0.04 1.10 7.21 45.15 0.33 1.42 16 5 N -0.36 -8.19 12.01 -44.78 -0.54 -8.73 16 6 O 0.11 1.94 11.06 76.99 0.85 2.79 16 7 C 0.04 0.46 11.85 67.61 0.80 1.27 16 8 C -0.27 -5.92 6.47 -18.74 -0.12 -6.04 16 9 C 0.59 16.56 7.81 86.66 0.68 17.24 16 10 O -0.57 -20.75 15.70 -4.04 -0.06 -20.82 16 11 N -0.69 -16.92 5.15 -466.40 -2.40 -19.32 16 12 C 0.15 4.84 4.82 86.38 0.42 5.25 16 13 C 0.09 3.19 0.76 -10.69 -0.01 3.18 16 14 C -0.15 -4.46 7.92 71.98 0.57 -3.89 16 15 C 0.17 7.68 4.12 86.36 0.36 8.03 16 16 N -0.61 -28.64 2.57 -697.55 -1.79 -30.43 16 17 C -0.26 -13.39 9.65 84.03 0.81 -12.58 16 18 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 19 C -0.05 -2.65 4.95 84.86 0.42 -2.23 16 20 N -0.94 -54.12 11.14 21.65 0.24 -53.88 16 21 Si 0.97 43.18 29.59 68.60 2.03 45.21 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.10 3.82 6.74 86.36 0.58 4.40 16 26 C 0.05 1.54 6.60 72.08 0.48 2.02 16 27 O -0.38 -12.14 9.98 -148.98 -1.49 -13.63 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 2.02 7.11 -2.39 -0.02 2.01 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.28 0.25 7.68 -2.91 -0.02 0.23 16 34 H 0.42 7.18 6.38 -92.70 -0.59 6.59 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.06 1.99 6.12 -2.39 -0.01 1.98 16 39 H 0.08 1.70 6.87 -2.39 -0.02 1.68 16 40 H 0.07 3.48 6.13 -2.39 -0.01 3.46 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.07 2.55 7.96 -2.39 -0.02 2.53 16 44 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.06 1.70 6.25 -2.39 -0.01 1.69 16 46 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 Total: -1.00 -74.91 377.40 2.67 -72.24 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.42 Total: 15.39 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 6.99 Total: 23.69 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -4.49 Total: -112.35 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -2.29 Total: -44.18 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.91 2.67 -72.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108339050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.270 kcal (2) G-P(sol) polarization free energy of solvation -74.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds