Wall clock time and date at job start Tue Mar 31 2020 22:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41378 * 126.58287 * 2 1 4 4 C 1.34511 * 106.84602 * 179.97438 * 3 2 1 5 5 O 1.34310 * 108.41817 * 359.73697 * 4 3 2 6 6 C 1.34311 * 109.47412 * 0.43657 * 5 4 3 7 7 C 1.50703 * 125.78886 * 179.82716 * 6 5 4 8 8 C 1.50695 * 109.46871 * 269.69157 * 7 6 5 9 9 O 1.21289 * 120.00281 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99997 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00168 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47066 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.47094 * 64.99573 * 12 11 10 14 14 C 1.52994 * 109.47222 * 184.99885 * 12 11 10 15 15 O 1.42902 * 109.47338 * 54.99866 * 14 12 11 16 16 N 1.46906 * 109.47092 * 304.99917 * 12 11 10 17 17 C 1.46901 * 110.99793 * 155.00227 * 16 12 11 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 12 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47268 * 89.99721 * 25 23 21 27 27 H 1.48498 * 109.47211 * 209.99980 * 25 23 21 28 28 H 1.48505 * 109.46734 * 329.99774 * 25 23 21 29 29 H 1.09005 * 109.46919 * 270.04001 * 1 2 3 30 30 H 1.09002 * 109.47075 * 30.03650 * 1 2 3 31 31 H 1.08998 * 109.47119 * 150.03990 * 1 2 3 32 32 H 1.08001 * 126.57427 * 359.97438 * 3 2 1 33 33 H 1.08002 * 125.79504 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47008 * 149.69128 * 7 6 5 35 35 H 1.08997 * 109.46586 * 29.69215 * 7 6 5 36 36 H 0.97000 * 120.00321 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47341 * 59.99968 * 11 10 8 38 38 H 1.08994 * 109.46909 * 299.99565 * 11 10 8 39 39 H 1.08998 * 109.47596 * 175.00055 * 14 12 11 40 40 H 1.09007 * 109.47272 * 295.00297 * 14 12 11 41 41 H 0.96703 * 114.00717 * 179.97438 * 15 14 12 42 42 H 1.00898 * 110.99995 * 278.95304 * 16 12 11 43 43 H 1.09002 * 109.47401 * 59.99808 * 17 16 12 44 44 H 1.09001 * 109.46874 * 299.99821 * 17 16 12 45 45 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 46 46 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5848 -0.6617 0.0068 6 6 2.3086 -1.0803 0.0006 7 6 1.8521 -2.5165 0.0008 8 6 1.7004 -2.9955 -1.4199 9 8 1.9400 -2.2448 -2.3419 10 7 1.2987 -4.2582 -1.6661 11 6 1.1518 -4.7241 -3.0472 12 6 0.6882 -6.1822 -3.0470 13 1 -0.3098 -6.2461 -2.6134 14 6 0.6546 -6.7069 -4.4838 15 8 1.9341 -6.5159 -5.0908 16 7 1.6205 -6.9923 -2.2516 17 6 0.9591 -8.1958 -1.7299 18 6 1.9444 -9.0001 -0.9216 19 8 3.0853 -8.6089 -0.7925 20 7 1.5577 -10.1535 -0.3414 21 6 2.4540 -10.8849 0.3944 22 1 3.4700 -10.5370 0.5086 23 6 2.0554 -12.0741 0.9921 24 7 0.8192 -12.4977 0.8526 25 14 3.2764 -13.0704 1.9952 26 1 3.2278 -12.6308 3.4128 27 1 2.9268 -14.5112 1.9114 28 1 4.6452 -12.8612 1.4586 29 1 -0.3633 0.0007 1.0277 30 1 -0.3633 0.8897 -0.5144 31 1 -0.3633 -0.8903 -0.5132 32 1 2.0367 2.1689 -0.0004 33 1 4.5061 1.2922 0.0011 34 1 0.8937 -2.5930 0.5143 35 1 2.5900 -3.1321 0.5151 36 1 1.1075 -4.8588 -0.9288 37 1 2.1105 -4.6481 -3.5603 38 1 0.4144 -4.1082 -3.5619 39 1 0.4106 -7.7692 -4.4771 40 1 -0.1013 -6.1640 -5.0513 41 1 1.9862 -6.8267 -6.0050 42 1 2.4392 -7.2341 -2.7895 43 1 0.5935 -8.7988 -2.5611 44 1 0.1213 -7.9042 -1.0965 45 1 0.6452 -10.4660 -0.4443 46 1 0.5410 -13.3278 1.2702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283805009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:16 Heat of formation + Delta-G solvation = -141.381495 kcal Electronic energy + Delta-G solvation = -28894.188789 eV Core-core repulsion = 24591.148241 eV Total energy + Delta-G solvation = -4303.040547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.51576 -40.73362 -40.13773 -38.83229 -36.45148 -35.92692 -35.19992 -34.90451 -33.25876 -33.09265 -31.22783 -29.74216 -27.85711 -27.41517 -26.08993 -25.54597 -22.44674 -21.87622 -21.68813 -21.09758 -20.45962 -19.90630 -18.59937 -18.23838 -17.98570 -17.74477 -16.96884 -16.77439 -16.70580 -16.52379 -16.36730 -15.94871 -15.58532 -15.40034 -15.19052 -15.01177 -14.50110 -14.36133 -14.33179 -13.94926 -13.91636 -13.61181 -13.54590 -13.38199 -13.27449 -13.07438 -12.89691 -12.84732 -12.57324 -12.40118 -12.33770 -12.22483 -12.12179 -11.48886 -11.04662 -10.91736 -10.49428 -10.32005 -9.98917 -9.98360 -9.33688 -9.25078 -8.45254 -5.93084 0.76931 1.38596 1.42839 1.54687 1.63040 1.66650 2.07090 2.09176 2.29828 2.45265 2.87462 3.22652 3.36094 3.64549 3.68031 3.84882 3.95234 4.00455 4.07968 4.12342 4.28700 4.32412 4.37752 4.45277 4.46639 4.56301 4.64582 4.64849 4.72203 4.80191 4.82671 4.89760 4.97857 5.03834 5.16676 5.33845 5.42986 5.50893 5.70649 5.91220 6.12256 6.24336 6.34318 6.61839 6.63133 6.89390 7.15640 7.28513 7.59952 8.16003 8.71917 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.002271 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.370424 B =12323.771136 C =13863.905672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.180 4.180 3 C -0.225 4.225 4 C -0.045 4.045 5 O -0.198 6.198 6 C -0.022 4.022 7 C -0.059 4.059 8 C 0.511 3.489 9 O -0.584 6.584 10 N -0.703 5.703 11 C 0.142 3.858 12 C 0.079 3.921 13 H 0.123 0.877 14 C 0.047 3.953 15 O -0.590 6.590 16 N -0.671 5.671 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.331 4.331 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.275 1.275 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.168 0.832 33 H 0.234 0.766 34 H 0.153 0.847 35 H 0.121 0.879 36 H 0.416 0.584 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.397 0.603 42 H 0.348 0.652 43 H 0.066 0.934 44 H 0.116 0.884 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 19.816 -5.513 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.181 4.181 3 C -0.244 4.244 4 C -0.112 4.112 5 O -0.095 6.095 6 C -0.072 4.072 7 C -0.098 4.098 8 C 0.298 3.702 9 O -0.465 6.465 10 N -0.354 5.354 11 C 0.018 3.982 12 C -0.031 4.031 13 H 0.141 0.859 14 C -0.033 4.033 15 O -0.399 6.399 16 N -0.303 5.303 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.460 4.460 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.200 1.200 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.186 0.814 33 H 0.250 0.750 34 H 0.171 0.829 35 H 0.139 0.861 36 H 0.253 0.747 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.247 0.753 42 H 0.167 0.833 43 H 0.084 0.916 44 H 0.134 0.866 45 H 0.231 0.769 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.559 20.813 -4.858 22.357 hybrid contribution 0.105 -1.728 -0.717 1.874 sum -6.454 19.085 -5.576 20.904 Atomic orbital electron populations 1.20225 0.87710 1.02873 1.02912 1.20615 0.98407 0.92148 1.06970 1.22037 0.92623 1.00600 1.09117 1.24711 1.01259 0.79955 1.05259 1.83984 1.29478 1.24229 1.71796 1.21707 0.81220 0.96132 1.08172 1.20177 1.06042 0.89024 0.94590 1.20761 0.76149 0.81937 0.91383 1.90695 1.51891 1.56309 1.47595 1.45748 1.67610 1.12150 1.09876 1.21138 1.01065 0.93325 0.82697 1.22095 0.97763 0.91873 0.91374 0.85923 1.22862 0.85911 1.00217 0.94270 1.86468 1.33478 1.86586 1.33320 1.60102 1.08619 1.19906 1.41672 1.21634 0.95666 0.91125 0.98373 1.20952 0.89651 0.82675 0.84186 1.90522 1.22800 1.71634 1.66092 1.41918 1.13353 1.20004 1.45820 1.19611 0.94658 1.03582 1.28199 0.90590 1.25962 0.98551 0.97867 0.98781 1.69659 1.17404 1.23673 1.45279 0.84988 0.77908 0.77426 0.78396 1.19654 1.19624 1.20045 0.89754 0.90863 0.92027 0.81406 0.75020 0.82940 0.86138 0.74688 0.93483 0.90603 0.92516 0.90527 0.75340 0.83267 0.91570 0.86603 0.76892 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.99 71.24 0.71 -0.63 16 2 C -0.18 -4.12 6.16 -19.94 -0.12 -4.24 16 3 C -0.22 -4.62 10.87 22.19 0.24 -4.38 16 4 C -0.05 -0.94 12.09 66.97 0.81 -0.13 16 5 O -0.20 -5.48 10.65 -2.63 -0.03 -5.51 16 6 C -0.02 -0.58 5.81 24.83 0.14 -0.43 16 7 C -0.06 -1.25 5.85 29.10 0.17 -1.08 16 8 C 0.51 13.73 7.82 87.66 0.69 14.42 16 9 O -0.58 -20.78 16.03 -3.06 -0.05 -20.83 16 10 N -0.70 -16.32 5.39 -463.06 -2.50 -18.81 16 11 C 0.14 3.31 5.26 86.38 0.45 3.76 16 12 C 0.08 1.55 2.57 44.91 0.12 1.66 16 13 H 0.12 1.75 7.80 -2.39 -0.02 1.73 16 14 C 0.05 0.78 6.71 71.98 0.48 1.26 16 15 O -0.59 -11.99 12.05 -148.98 -1.80 -13.79 16 16 N -0.67 -18.76 5.32 -495.56 -2.63 -21.39 16 17 C 0.06 1.89 5.96 85.56 0.51 2.40 16 18 C 0.44 19.58 7.82 87.66 0.69 20.26 16 19 O -0.62 -33.59 15.78 -3.07 -0.05 -33.64 16 20 N -0.57 -28.03 5.29 -306.98 -1.62 -29.65 16 21 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 22 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 23 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 24 N -0.92 -48.22 13.05 21.66 0.28 -47.94 16 25 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.04 7.78 -2.39 -0.02 1.02 16 32 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.23 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.15 2.10 7.76 -2.39 -0.02 2.08 16 35 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.42 8.59 8.14 -92.71 -0.75 7.83 16 37 H 0.05 1.41 7.39 -2.39 -0.02 1.39 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 0.90 7.35 -2.39 -0.02 0.88 16 40 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 41 H 0.40 4.59 9.12 -74.06 -0.68 3.92 16 42 H 0.35 11.76 7.64 -89.70 -0.69 11.08 16 43 H 0.07 1.69 7.36 -2.39 -0.02 1.67 16 44 H 0.12 2.79 8.06 -2.39 -0.02 2.77 16 45 H 0.40 18.22 7.90 -92.71 -0.73 17.48 16 46 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -80.72 395.13 -1.98 -82.70 By element: Atomic # 1 Polarization: 51.12 SS G_CDS: -1.79 Total: 49.33 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.17 Total: 15.20 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -6.47 Total: -117.79 kcal Atomic # 8 Polarization: -71.85 SS G_CDS: -1.92 Total: -73.77 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -80.72 -1.98 -82.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283805009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.679 kcal (2) G-P(sol) polarization free energy of solvation -80.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds