Wall clock time and date at job start Tue Mar 31 2020 23:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34179 * 127.02539 * 2 1 4 4 O 1.34220 * 109.12266 * 180.27355 * 3 2 1 5 5 C 1.33649 * 110.90727 * 359.70935 * 4 3 2 6 6 C 1.50701 * 125.79711 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.40052 * 359.97438 * 5 4 3 8 8 C 1.47379 * 127.19365 * 180.02562 * 7 5 4 9 9 O 1.21606 * 119.99839 * 90.02930 * 8 7 5 10 10 N 1.34767 * 120.00048 * 270.02983 * 8 7 5 11 11 C 1.46500 * 120.00203 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47473 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47289 * 60.00327 * 12 11 10 14 14 O 1.42905 * 109.47264 * 300.00160 * 12 11 10 15 15 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 16 16 N 1.46903 * 109.47311 * 185.00088 * 15 12 11 17 17 C 1.46899 * 111.00461 * 179.97438 * 16 15 12 18 18 C 1.50698 * 109.47431 * 180.02562 * 17 16 15 19 19 O 1.21291 * 119.99715 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00031 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99903 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99819 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99940 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00087 * 180.02562 * 23 21 20 25 25 Si 1.86809 * 120.00028 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46614 * 90.00020 * 25 23 21 27 27 H 1.48496 * 109.47123 * 210.00138 * 25 23 21 28 28 H 1.48501 * 109.47045 * 330.00538 * 25 23 21 29 29 H 1.09007 * 109.46949 * 270.20193 * 1 2 3 30 30 H 1.09004 * 109.47138 * 30.19678 * 1 2 3 31 31 H 1.08997 * 109.47736 * 150.19835 * 1 2 3 32 32 H 1.08000 * 125.43880 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.47037 * 269.98980 * 6 5 4 34 34 H 1.08991 * 109.47354 * 29.99814 * 6 5 4 35 35 H 1.09004 * 109.47104 * 149.99715 * 6 5 4 36 36 H 0.97004 * 120.00402 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47049 * 60.00181 * 11 10 8 38 38 H 1.09002 * 109.47129 * 300.00254 * 11 10 8 39 39 H 0.96696 * 114.00036 * 299.99911 * 14 12 11 40 40 H 1.09000 * 109.47278 * 304.99661 * 15 12 11 41 41 H 1.08994 * 109.47510 * 65.00170 * 15 12 11 42 42 H 1.00905 * 111.00094 * 56.04305 * 16 15 12 43 43 H 1.09001 * 109.46842 * 299.99800 * 17 16 15 44 44 H 1.09002 * 109.47119 * 59.99601 * 17 16 15 45 45 H 0.96996 * 120.00282 * 359.97438 * 20 18 17 46 46 H 0.96996 * 119.99806 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6587 -0.0061 5 6 3.6623 -0.6760 -0.0038 6 6 4.9291 -1.4922 -0.0085 7 6 2.3922 -1.1739 0.0045 8 6 1.9912 -2.5921 0.0102 9 8 1.8313 -3.1745 1.0657 10 7 1.8019 -3.2434 -1.1543 11 6 1.4039 -4.6533 -1.1487 12 6 1.2569 -5.1476 -2.5892 13 1 2.2092 -5.0410 -3.1088 14 8 0.2596 -4.3737 -3.2590 15 6 0.8406 -6.6198 -2.5833 16 7 0.8157 -7.1272 -3.9617 17 6 0.4198 -8.5414 -3.9951 18 6 0.4063 -9.0258 -5.4221 19 8 0.6973 -8.2673 -6.3227 20 7 0.0698 -10.3014 -5.6975 21 6 0.0580 -10.7422 -6.9957 22 1 0.3179 -10.0671 -7.7975 23 6 -0.2884 -12.0575 -7.2797 24 7 -0.2993 -12.4801 -8.5240 25 14 -0.7374 -13.2255 -5.8926 26 1 -2.1993 -13.1562 -5.6409 27 1 -0.3657 -14.6119 -6.2731 28 1 -0.0041 -12.8365 -4.6612 29 1 -0.3633 0.0036 1.0277 30 1 -0.3633 0.8882 -0.5169 31 1 -0.3634 -0.8917 -0.5107 32 1 1.9896 2.1010 -0.0004 33 1 5.2293 -1.6911 -1.0372 34 1 5.7190 -0.9399 0.5003 35 1 4.7551 -2.4361 0.5081 36 1 1.9299 -2.7790 -1.9963 37 1 0.4514 -4.7599 -0.6295 38 1 2.1644 -5.2435 -0.6375 39 1 -0.6155 -4.4215 -2.8503 40 1 1.5552 -7.1971 -1.9965 41 1 -0.1520 -6.7150 -2.1432 42 1 1.7077 -6.9910 -4.4133 43 1 1.1318 -9.1317 -3.4182 44 1 -0.5756 -8.6503 -3.5645 45 1 -0.1633 -10.9079 -4.9773 46 1 -0.5415 -13.3982 -8.7222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320216200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:16 Heat of formation + Delta-G solvation = -107.507150 kcal Electronic energy + Delta-G solvation = -28161.880873 eV Core-core repulsion = 23860.309227 eV Total energy + Delta-G solvation = -4301.571645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.96510 -39.90015 -38.64071 -37.93375 -35.09243 -34.53014 -34.28690 -33.86278 -32.96376 -31.68170 -30.49542 -28.67927 -27.50497 -26.79248 -25.09592 -23.59937 -22.64322 -22.04766 -20.45713 -20.07969 -19.39992 -18.40690 -18.23707 -17.20918 -16.79841 -16.53267 -16.28880 -15.83678 -15.53713 -15.47957 -15.01420 -14.93034 -14.62856 -14.33850 -13.89401 -13.77361 -13.70166 -13.57970 -13.37277 -13.33666 -13.23111 -13.09582 -12.80810 -12.70200 -12.57381 -12.14936 -11.94439 -11.76921 -11.72172 -11.24863 -11.16470 -10.61100 -10.59643 -10.20164 -9.98287 -9.83238 -9.58486 -9.47751 -8.90311 -8.60984 -8.21571 -8.16775 -6.32064 -3.83630 1.19492 1.80182 2.16811 2.40779 2.86053 3.01067 3.05885 3.14052 3.72097 3.88707 4.02029 4.09092 4.21194 4.34575 4.50594 4.57637 4.61267 4.68816 4.83775 4.86776 4.90877 4.94410 5.11602 5.15470 5.20774 5.22260 5.23095 5.31832 5.41325 5.44453 5.50042 5.58288 5.70139 5.75709 5.76957 5.90282 5.97062 6.00213 6.63668 6.98451 7.11598 7.41337 7.55014 7.57041 7.83626 8.13413 8.58612 8.93953 9.41229 9.81387 10.81039 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.001591 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.767711 B =17591.765615 C =17620.540671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.147 4.147 3 C -0.039 4.039 4 O -0.172 6.172 5 C 0.046 3.954 6 C -0.082 4.082 7 C -0.232 4.232 8 C 0.594 3.406 9 O -0.534 6.534 10 N -0.713 5.713 11 C 0.086 3.914 12 C 0.101 3.899 13 H 0.105 0.895 14 O -0.542 6.542 15 C 0.030 3.970 16 N -0.658 5.658 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.208 0.792 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.408 0.592 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.375 0.625 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.352 0.648 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 23.538 21.635 32.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C -0.105 4.105 4 O -0.069 6.069 5 C -0.006 4.006 6 C -0.138 4.138 7 C -0.236 4.236 8 C 0.379 3.621 9 O -0.411 6.411 10 N -0.365 5.365 11 C -0.038 4.038 12 C 0.041 3.959 13 H 0.123 0.877 14 O -0.347 6.347 15 C -0.101 4.101 16 N -0.291 5.291 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.444 6.444 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.224 0.776 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.244 0.756 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.222 0.778 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.171 0.829 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.831 23.986 21.082 32.462 hybrid contribution -0.233 -1.580 1.384 2.113 sum 5.598 22.406 22.467 32.220 Atomic orbital electron populations 1.20203 0.88490 1.03029 1.02587 1.21353 0.96883 0.90459 1.06177 1.23652 0.79523 0.99610 1.07758 1.83729 1.29662 1.21820 1.71661 1.22541 0.95998 0.80889 1.01204 1.20467 0.91204 0.97908 1.04270 1.20971 0.93273 0.93855 1.15509 1.17289 0.76467 0.84672 0.83672 1.90817 1.50787 1.68274 1.31189 1.45873 1.69696 1.12063 1.08853 1.22117 1.01706 0.81855 0.98155 1.22098 0.93478 0.89920 0.90398 0.87681 1.86646 1.21367 1.70132 1.56508 1.22579 1.01664 0.94683 0.91142 1.59958 1.37924 1.16860 1.14374 1.21724 1.01395 0.88830 0.96554 1.19681 0.84201 0.82815 0.89813 1.90577 1.52052 1.54591 1.47219 1.42203 1.62288 1.09973 1.08550 1.19437 1.43981 0.96783 0.83225 0.86266 1.25043 0.97665 0.96945 0.96512 1.69621 1.47457 1.17593 1.17418 0.86665 0.79389 0.81511 0.81758 1.19589 1.20183 1.19568 0.90997 0.90964 0.91329 0.77562 0.89156 0.89657 0.89071 0.75593 0.90791 0.90341 0.77772 0.94329 0.90348 0.82864 0.93787 0.89468 0.79706 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.38 36.01 0.37 -0.20 16 2 C -0.15 -1.23 6.38 -102.49 -0.65 -1.88 16 3 C -0.04 -0.27 11.96 29.30 0.35 0.08 16 4 O -0.17 -1.44 10.52 7.65 0.08 -1.36 16 5 C 0.05 0.39 7.37 -34.96 -0.26 0.13 16 6 C -0.08 -0.47 10.24 36.01 0.37 -0.10 16 7 C -0.23 -2.26 6.07 -103.27 -0.63 -2.88 16 8 C 0.59 6.40 7.25 -12.54 -0.09 6.31 16 9 O -0.53 -7.69 17.11 5.27 0.09 -7.60 16 10 N -0.71 -6.00 5.44 -61.40 -0.33 -6.34 16 11 C 0.09 0.69 5.34 -4.04 -0.02 0.66 16 12 C 0.10 0.87 3.23 -26.73 -0.09 0.78 16 13 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 14 O -0.54 -5.47 13.03 -35.23 -0.46 -5.93 16 15 C 0.03 0.30 5.32 -3.82 -0.02 0.28 16 16 N -0.66 -9.59 6.07 -115.06 -0.70 -10.28 16 17 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 18 C 0.45 10.10 7.82 -10.99 -0.09 10.02 16 19 O -0.56 -15.10 15.78 5.55 0.09 -15.02 16 20 N -0.59 -13.98 5.09 -10.97 -0.06 -14.03 16 21 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 25 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 36 H 0.41 3.06 8.33 -40.82 -0.34 2.72 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.38 2.79 9.04 45.56 0.41 3.20 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -37.37 399.63 -6.20 -43.57 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -5.96 Total: 15.18 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.03 Total: 6.17 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.31 Total: -55.57 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.20 Total: -29.91 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.37 -6.20 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320216200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.940 kcal (2) G-P(sol) polarization free energy of solvation -37.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds