Wall clock time and date at job start Tue Mar 31 2020 23:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34179 * 127.02539 * 2 1 4 4 O 1.34220 * 109.12266 * 180.27355 * 3 2 1 5 5 C 1.33649 * 110.90727 * 359.70935 * 4 3 2 6 6 C 1.50701 * 125.79711 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.40052 * 359.97438 * 5 4 3 8 8 C 1.47379 * 127.19365 * 180.02562 * 7 5 4 9 9 O 1.21606 * 119.99839 * 90.02930 * 8 7 5 10 10 N 1.34767 * 120.00048 * 270.02983 * 8 7 5 11 11 C 1.46500 * 120.00203 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47473 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47289 * 60.00327 * 12 11 10 14 14 O 1.42905 * 109.47264 * 300.00160 * 12 11 10 15 15 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 16 16 N 1.46903 * 109.47311 * 185.00088 * 15 12 11 17 17 C 1.46899 * 111.00461 * 179.97438 * 16 15 12 18 18 C 1.50698 * 109.47431 * 180.02562 * 17 16 15 19 19 O 1.21291 * 119.99715 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00031 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99903 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99819 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99940 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00087 * 180.02562 * 23 21 20 25 25 Si 1.86809 * 120.00028 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46614 * 90.00020 * 25 23 21 27 27 H 1.48496 * 109.47123 * 210.00138 * 25 23 21 28 28 H 1.48501 * 109.47045 * 330.00538 * 25 23 21 29 29 H 1.09007 * 109.46949 * 270.20193 * 1 2 3 30 30 H 1.09004 * 109.47138 * 30.19678 * 1 2 3 31 31 H 1.08997 * 109.47736 * 150.19835 * 1 2 3 32 32 H 1.08000 * 125.43880 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.47037 * 269.98980 * 6 5 4 34 34 H 1.08991 * 109.47354 * 29.99814 * 6 5 4 35 35 H 1.09004 * 109.47104 * 149.99715 * 6 5 4 36 36 H 0.97004 * 120.00402 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47049 * 60.00181 * 11 10 8 38 38 H 1.09002 * 109.47129 * 300.00254 * 11 10 8 39 39 H 0.96696 * 114.00036 * 299.99911 * 14 12 11 40 40 H 1.09000 * 109.47278 * 304.99661 * 15 12 11 41 41 H 1.08994 * 109.47510 * 65.00170 * 15 12 11 42 42 H 1.00905 * 111.00094 * 56.04305 * 16 15 12 43 43 H 1.09001 * 109.46842 * 299.99800 * 17 16 15 44 44 H 1.09002 * 109.47119 * 59.99601 * 17 16 15 45 45 H 0.96996 * 120.00282 * 359.97438 * 20 18 17 46 46 H 0.96996 * 119.99806 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6587 -0.0061 5 6 3.6623 -0.6760 -0.0038 6 6 4.9291 -1.4922 -0.0085 7 6 2.3922 -1.1739 0.0045 8 6 1.9912 -2.5921 0.0102 9 8 1.8313 -3.1745 1.0657 10 7 1.8019 -3.2434 -1.1543 11 6 1.4039 -4.6533 -1.1487 12 6 1.2569 -5.1476 -2.5892 13 1 2.2092 -5.0410 -3.1088 14 8 0.2596 -4.3737 -3.2590 15 6 0.8406 -6.6198 -2.5833 16 7 0.8157 -7.1272 -3.9617 17 6 0.4198 -8.5414 -3.9951 18 6 0.4063 -9.0258 -5.4221 19 8 0.6973 -8.2673 -6.3227 20 7 0.0698 -10.3014 -5.6975 21 6 0.0580 -10.7422 -6.9957 22 1 0.3179 -10.0671 -7.7975 23 6 -0.2884 -12.0575 -7.2797 24 7 -0.2993 -12.4801 -8.5240 25 14 -0.7374 -13.2255 -5.8926 26 1 -2.1993 -13.1562 -5.6409 27 1 -0.3657 -14.6119 -6.2731 28 1 -0.0041 -12.8365 -4.6612 29 1 -0.3633 0.0036 1.0277 30 1 -0.3633 0.8882 -0.5169 31 1 -0.3634 -0.8917 -0.5107 32 1 1.9896 2.1010 -0.0004 33 1 5.2293 -1.6911 -1.0372 34 1 5.7190 -0.9399 0.5003 35 1 4.7551 -2.4361 0.5081 36 1 1.9299 -2.7790 -1.9963 37 1 0.4514 -4.7599 -0.6295 38 1 2.1644 -5.2435 -0.6375 39 1 -0.6155 -4.4215 -2.8503 40 1 1.5552 -7.1971 -1.9965 41 1 -0.1520 -6.7150 -2.1432 42 1 1.7077 -6.9910 -4.4133 43 1 1.1318 -9.1317 -3.4182 44 1 -0.5756 -8.6503 -3.5645 45 1 -0.1633 -10.9079 -4.9773 46 1 -0.5415 -13.3982 -8.7222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320216200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:16 Heat of formation + Delta-G solvation = -141.307765 kcal Electronic energy + Delta-G solvation = -28163.346577 eV Core-core repulsion = 23860.309227 eV Total energy + Delta-G solvation = -4303.037350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.55218 -40.71578 -40.29441 -38.90089 -36.36326 -35.71760 -35.30696 -34.88070 -33.74489 -33.49945 -31.38398 -29.35430 -28.58974 -27.44403 -26.47552 -24.83089 -23.49628 -22.78805 -21.30218 -21.11416 -20.67991 -20.26178 -18.89225 -18.23312 -17.51868 -17.48905 -17.14541 -16.97789 -16.81826 -16.48561 -16.24833 -15.85994 -15.73986 -15.25869 -14.96594 -14.92128 -14.61542 -14.42310 -14.38013 -14.26804 -14.16770 -13.81845 -13.78586 -13.60073 -13.40925 -13.29460 -13.24735 -12.98225 -12.68971 -12.41028 -12.31131 -11.97928 -11.97241 -11.51248 -11.43613 -11.00321 -10.47576 -10.41426 -10.24666 -10.23705 -9.45968 -9.28645 -8.41117 -6.02262 0.60055 1.21618 1.30408 1.36334 1.36700 1.45062 1.84860 1.96198 2.17069 2.23397 2.73501 3.15156 3.31863 3.50338 3.55606 3.71260 3.81572 3.94453 4.02523 4.12351 4.18168 4.20344 4.34610 4.42043 4.50340 4.53822 4.55891 4.59578 4.67677 4.73454 4.73680 4.74933 4.96586 4.99163 5.06243 5.18363 5.26922 5.45058 5.52539 5.89512 6.03024 6.05593 6.34799 6.38586 6.59955 6.86876 6.88396 7.06764 7.40057 7.97107 8.76565 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.001591 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.767711 B =17591.765615 C =17620.540671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.032 4.032 4 O -0.179 6.179 5 C 0.041 3.959 6 C -0.082 4.082 7 C -0.261 4.261 8 C 0.597 3.403 9 O -0.577 6.577 10 N -0.701 5.701 11 C 0.093 3.907 12 C 0.113 3.887 13 H 0.103 0.897 14 O -0.561 6.561 15 C 0.032 3.968 16 N -0.680 5.680 17 C 0.062 3.938 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.230 1.230 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.244 0.756 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.386 0.614 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.344 0.656 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 23.595 24.805 34.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.172 4.172 3 C -0.097 4.097 4 O -0.076 6.076 5 C -0.011 4.011 6 C -0.138 4.138 7 C -0.265 4.265 8 C 0.384 3.616 9 O -0.457 6.457 10 N -0.352 5.352 11 C -0.031 4.031 12 C 0.052 3.948 13 H 0.121 0.879 14 O -0.368 6.368 15 C -0.097 4.097 16 N -0.313 5.313 17 C -0.070 4.070 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.460 4.460 22 H 0.072 0.928 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.153 1.153 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.260 0.740 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.235 0.765 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.162 0.838 43 H 0.096 0.904 44 H 0.133 0.867 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.604 24.064 24.261 34.628 hybrid contribution -0.134 -1.449 0.290 1.484 sum 5.471 22.615 24.551 33.825 Atomic orbital electron populations 1.20215 0.87633 1.03561 1.02619 1.21657 0.97762 0.90471 1.07315 1.24360 0.78677 1.00844 1.05828 1.83748 1.30487 1.21710 1.71613 1.22979 0.96528 0.81154 1.00415 1.20572 0.90547 0.97352 1.05349 1.21115 0.94439 0.93722 1.17263 1.17439 0.75722 0.85048 0.83407 1.90785 1.53036 1.69274 1.32615 1.45812 1.68560 1.12262 1.08539 1.22065 1.01921 0.81472 0.97652 1.21981 0.93073 0.89282 0.90428 0.87926 1.86623 1.22346 1.70493 1.57289 1.22658 1.03181 0.95096 0.88770 1.59950 1.37787 1.16173 1.17346 1.21641 1.04019 0.89958 0.91364 1.21051 0.81322 0.81746 0.92421 1.90554 1.53573 1.55891 1.49907 1.42030 1.63047 1.11017 1.07180 1.19013 1.45989 0.96765 0.84183 0.92774 1.26139 0.96544 0.98636 1.00117 1.69808 1.48469 1.18545 1.20700 0.85346 0.79939 0.77581 0.78513 1.18183 1.20075 1.15328 0.91204 0.88764 0.92437 0.73989 0.87631 0.88171 0.89767 0.74960 0.90597 0.89950 0.76535 0.92268 0.88927 0.83783 0.90412 0.86708 0.77435 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.38 71.24 0.74 -0.30 16 2 C -0.17 -2.71 6.38 -18.49 -0.12 -2.83 16 3 C -0.03 -0.38 11.96 66.89 0.80 0.42 16 4 O -0.18 -2.77 10.52 4.45 0.05 -2.72 16 5 C 0.04 0.67 7.37 25.26 0.19 0.86 16 6 C -0.08 -0.85 10.24 71.24 0.73 -0.12 16 7 C -0.26 -5.01 6.07 -18.99 -0.12 -5.12 16 8 C 0.60 12.79 7.25 86.65 0.63 13.42 16 9 O -0.58 -16.74 17.11 -4.05 -0.07 -16.81 16 10 N -0.70 -11.26 5.44 -466.43 -2.54 -13.80 16 11 C 0.09 1.33 5.34 86.38 0.46 1.79 16 12 C 0.11 1.72 3.23 30.59 0.10 1.82 16 13 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 14 O -0.56 -10.56 13.03 -148.98 -1.94 -12.50 16 15 C 0.03 0.54 5.32 86.30 0.46 1.00 16 16 N -0.68 -18.36 6.07 -517.94 -3.15 -21.51 16 17 C 0.06 1.79 6.17 85.56 0.53 2.32 16 18 C 0.45 19.88 7.82 87.66 0.69 20.57 16 19 O -0.61 -34.11 15.78 -3.07 -0.05 -34.16 16 20 N -0.59 -27.58 5.09 -306.99 -1.56 -29.14 16 21 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 22 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.93 -56.37 13.96 21.66 0.30 -56.06 16 25 Si 0.97 38.42 27.74 68.60 1.90 40.32 16 26 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 27 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 28 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 29 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.24 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 1.00 7.93 -2.38 -0.02 0.98 16 36 H 0.41 5.90 8.33 -92.71 -0.77 5.12 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.39 5.14 9.04 -74.06 -0.67 4.47 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.34 10.16 8.43 -89.69 -0.76 9.41 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.39 14.90 5.76 -92.71 -0.53 14.37 16 46 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -87.64 399.63 -2.39 -90.03 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: -1.74 Total: 41.43 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 6.40 Total: 14.91 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -6.95 Total: -120.51 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -2.01 Total: -66.19 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.90 Total: 40.32 kcal Total: -87.64 -2.39 -90.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320216200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.274 kcal (2) G-P(sol) polarization free energy of solvation -87.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds