Wall clock time and date at job start Tue Mar 31 2020 22:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48498 * 109.47099 * 270.00362 * 3 2 1 5 5 H 1.48503 * 109.46988 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47338 * 149.99871 * 3 2 1 7 7 C 1.38818 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99493 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00232 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00041 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47062 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.46894 * 304.99987 * 11 10 9 13 13 O 1.42902 * 109.47087 * 64.99890 * 11 10 9 14 14 C 1.52994 * 109.46843 * 184.99760 * 11 10 9 15 15 N 1.46503 * 109.47180 * 179.97438 * 14 11 10 16 16 C 1.34776 * 120.00452 * 179.97438 * 15 14 11 17 17 O 1.21283 * 119.99740 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00122 * 180.02562 * 16 15 14 19 19 H 1.09005 * 110.62835 * 56.90124 * 18 16 15 20 20 C 1.55428 * 110.69646 * 293.62776 * 18 16 15 21 21 C 1.54906 * 101.52325 * 205.97577 * 20 18 16 22 22 N 1.47845 * 104.89360 * 37.06199 * 21 20 18 23 23 C 1.46902 * 111.00153 * 213.57961 * 22 21 20 24 24 C 1.52998 * 109.47216 * 293.86788 * 23 22 21 25 25 F 1.39895 * 109.47112 * 65.70739 * 24 23 22 26 26 F 1.39901 * 109.46819 * 185.71163 * 24 23 22 27 27 F 1.39896 * 109.46863 * 305.70454 * 24 23 22 28 28 C 1.47444 * 108.56771 * 335.84981 * 22 21 20 29 29 H 0.97003 * 120.00075 * 359.97438 * 1 2 3 30 30 H 0.96995 * 119.99800 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46751 * 59.99880 * 10 9 7 32 32 H 1.08998 * 109.46771 * 300.00048 * 10 9 7 33 33 H 0.96700 * 113.99983 * 59.99820 * 13 11 10 34 34 H 1.09010 * 109.47034 * 60.00386 * 14 11 10 35 35 H 1.08996 * 109.47693 * 300.00359 * 14 11 10 36 36 H 0.97002 * 119.99663 * 0.02562 * 15 14 11 37 37 H 1.09001 * 111.10585 * 87.90422 * 20 18 16 38 38 H 1.08998 * 111.00027 * 323.99734 * 20 18 16 39 39 H 1.09002 * 110.37194 * 278.17956 * 21 20 18 40 40 H 1.08997 * 110.37732 * 155.95335 * 21 20 18 41 41 H 1.09001 * 109.46944 * 53.86503 * 23 22 21 42 42 H 1.09000 * 109.47303 * 173.86152 * 23 22 21 43 43 H 1.09004 * 109.88474 * 120.38888 * 28 22 21 44 44 H 1.08997 * 109.89248 * 241.41775 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0022 11 6 5.6163 -2.1915 -0.0020 12 1 5.8658 -1.5449 -0.8432 13 8 5.9806 -1.5457 1.2197 14 6 6.3801 -3.5110 -0.1288 15 7 7.8205 -3.2434 -0.1292 16 6 8.6955 -4.2634 -0.2314 17 8 8.2905 -5.4029 -0.3235 18 6 10.1771 -3.9881 -0.2312 19 1 10.4668 -3.4459 0.6690 20 6 10.5899 -3.2022 -1.5070 21 6 12.0759 -3.6134 -1.6565 22 7 12.1199 -5.0338 -1.2486 23 6 13.3910 -5.3516 -0.5841 24 6 14.5372 -5.2280 -1.5899 25 9 14.6671 -3.8929 -1.9871 26 9 15.7286 -5.6553 -0.9940 27 9 14.2640 -6.0228 -2.7082 28 6 10.9763 -5.3021 -0.3576 29 1 -0.4850 0.8401 0.0004 30 1 3.8645 -0.3623 -0.0007 31 1 3.8483 -3.0419 -0.8925 32 1 3.8490 -3.0431 0.8875 33 1 5.7867 -2.0650 2.0121 34 1 6.1023 -4.0036 -1.0607 35 1 6.1306 -4.1577 0.7124 36 1 8.1445 -2.3321 -0.0551 37 1 10.4958 -2.1272 -1.3534 38 1 10.0070 -3.5243 -2.3699 39 1 12.7042 -3.0107 -1.0007 40 1 12.3971 -3.5059 -2.6925 41 1 13.5539 -4.6567 0.2397 42 1 13.3545 -6.3704 -0.1982 43 1 10.3453 -6.0798 -0.7880 44 1 11.3354 -5.6164 0.6224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482761721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:53 Heat of formation + Delta-G solvation = -221.200034 kcal Electronic energy + Delta-G solvation = -29337.192232 eV Core-core repulsion = 24488.833753 eV Total energy + Delta-G solvation = -4848.358479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.50513 -48.07632 -47.91670 -40.64400 -38.88761 -37.74288 -34.62209 -34.21693 -33.49100 -31.53704 -29.95563 -29.50567 -28.54783 -25.76545 -23.78568 -23.01830 -22.09214 -21.67384 -21.53748 -20.18168 -18.98796 -18.87832 -18.17887 -17.82987 -17.67294 -16.64765 -16.31170 -16.03026 -15.66125 -15.30748 -14.97016 -14.85617 -14.72470 -14.60061 -14.49514 -14.41790 -14.12902 -14.09648 -13.87761 -13.80194 -13.42873 -13.28397 -13.23708 -12.73582 -12.51003 -12.44479 -12.23113 -12.04728 -11.88355 -11.72154 -11.36863 -11.35340 -10.91363 -10.87733 -10.24219 -10.16280 -9.80107 -9.60216 -9.28875 -9.12306 -8.97069 -7.30429 -5.81413 -3.18016 2.21857 2.35801 2.82159 3.03534 3.32844 3.35926 3.41004 3.43516 3.54419 3.80402 4.01610 4.04029 4.34644 4.45751 4.49339 4.56086 4.60348 4.62718 4.71192 4.74745 4.80035 4.99585 5.05172 5.27234 5.36151 5.39851 5.47168 5.52092 5.62703 5.67653 5.70956 5.79718 6.10225 6.13133 6.20707 6.36579 6.48656 7.25952 7.69203 7.93792 7.97208 8.36850 9.16041 9.87917 10.07222 11.36529 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.001724 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.491933 B =16235.331501 C =16684.882681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.250 4.250 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.105 0.895 13 O -0.557 6.557 14 C 0.089 3.911 15 N -0.719 5.719 16 C 0.523 3.477 17 O -0.538 6.538 18 C -0.133 4.133 19 H 0.105 0.895 20 C -0.117 4.117 21 C 0.032 3.968 22 N -0.522 5.522 23 C 0.003 3.997 24 C 0.457 3.543 25 F -0.184 7.184 26 F -0.184 7.184 27 F -0.171 7.171 28 C 0.059 3.941 29 H 0.260 0.740 30 H 0.365 0.635 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.376 0.624 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.575 -9.623 -0.233 33.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.003 3.997 11 C 0.025 3.975 12 H 0.122 0.878 13 O -0.362 6.362 14 C -0.035 4.035 15 N -0.370 5.370 16 C 0.308 3.692 17 O -0.415 6.415 18 C -0.155 4.155 19 H 0.123 0.877 20 C -0.155 4.155 21 C -0.095 4.095 22 N -0.246 5.246 23 C -0.128 4.128 24 C 0.402 3.598 25 F -0.166 7.166 26 F -0.166 7.166 27 F -0.153 7.153 28 C -0.068 4.068 29 H 0.070 0.930 30 H 0.199 0.801 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.223 0.777 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.240 0.760 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.128 0.872 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 32.206 -10.383 -1.169 33.858 hybrid contribution 0.714 1.734 0.990 2.121 sum 32.920 -8.649 -0.178 34.038 Atomic orbital electron populations 1.69703 1.05144 1.25950 1.57170 1.24679 0.95251 0.97329 1.01739 0.86535 0.79449 0.84746 0.77820 1.21086 1.21714 1.19906 1.19041 0.80500 0.94793 1.43595 0.89245 1.42564 1.03959 1.01931 1.91087 1.21177 0.88460 0.90321 0.99763 1.22454 0.94621 0.92285 0.88122 0.87761 1.86547 1.85887 1.48189 1.15597 1.22096 0.79520 0.98395 1.03506 1.45889 1.06603 1.10131 1.74379 1.20173 0.87853 0.85086 0.76083 1.90720 1.79922 1.21486 1.49336 1.22571 0.93013 0.98967 1.00994 0.87724 1.22781 0.95706 1.00285 0.96749 1.23359 0.96729 0.86873 1.02510 1.63643 1.00494 1.21803 1.38646 1.23488 0.88952 1.06449 0.93864 1.20415 0.83431 0.73757 0.82151 1.93181 1.96294 1.35237 1.91890 1.93196 1.49879 1.89906 1.83622 1.93221 1.93571 1.73849 1.54612 1.22795 0.90760 0.97288 0.95920 0.92983 0.80127 0.94416 0.95052 0.77664 0.90157 0.90824 0.76015 0.89368 0.89556 0.92241 0.88979 0.89930 0.86013 0.87235 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.95 27.73 -169.99 -4.71 17.23 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.27 5.35 -59.91 -0.32 -17.59 16 10 C 0.13 2.31 5.90 -4.04 -0.02 2.28 16 11 C 0.08 1.11 3.09 -26.73 -0.08 1.03 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 13 O -0.56 -7.39 13.03 -35.23 -0.46 -7.85 16 14 C 0.09 0.99 5.34 -4.04 -0.02 0.97 16 15 N -0.72 -6.69 5.45 -60.30 -0.33 -7.01 16 16 C 0.52 5.26 7.14 -10.99 -0.08 5.18 16 17 O -0.54 -7.51 15.42 5.56 0.09 -7.43 16 18 C -0.13 -0.89 3.34 -89.79 -0.30 -1.19 16 19 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 20 C -0.12 -0.68 6.53 -24.44 -0.16 -0.84 16 21 C 0.03 0.19 5.09 -2.30 -0.01 0.18 16 22 N -0.52 -3.52 5.01 -231.25 -1.16 -4.68 16 23 C 0.00 0.01 4.64 -3.82 -0.02 0.00 16 24 C 0.46 3.09 3.20 37.16 0.12 3.21 16 25 F -0.18 -1.36 14.83 2.25 0.03 -1.32 16 26 F -0.18 -1.31 17.32 2.25 0.04 -1.28 16 27 F -0.17 -1.49 17.13 2.25 0.04 -1.45 16 28 C 0.06 0.42 6.31 -2.83 -0.02 0.40 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.37 8.37 5.53 -40.82 -0.23 8.14 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.38 4.05 9.05 45.56 0.41 4.46 16 34 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.11 8.35 -40.82 -0.34 2.77 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.62 8.04 -51.93 -0.42 0.20 16 39 H 0.06 0.29 7.17 -51.93 -0.37 -0.08 16 40 H 0.09 0.60 7.76 -51.93 -0.40 0.20 16 41 H 0.08 0.27 7.93 -51.93 -0.41 -0.14 16 42 H 0.12 0.45 8.11 -51.93 -0.42 0.03 16 43 H 0.11 1.05 6.80 -51.93 -0.35 0.70 16 44 H 0.07 0.36 7.58 -51.93 -0.39 -0.03 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -34.57 372.20 -6.73 -41.30 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.48 Total: 8.66 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.85 Total: 4.16 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -1.03 Total: -57.62 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.37 Total: -15.28 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.11 Total: -4.05 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.57 -6.73 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482761721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.905 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds