Wall clock time and date at job start Tue Mar 31 2020 23:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34337 * 126.44319 * 2 1 4 4 N 1.34471 * 107.66898 * 179.97438 * 3 2 1 5 5 C 1.30258 * 108.70643 * 359.97438 * 4 3 2 6 6 C 1.50692 * 125.62425 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.47134 * 90.02369 * 6 5 4 8 8 C 1.42901 * 114.00280 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47242 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99816 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47282 * 179.97438 * 12 11 9 14 14 O 1.42901 * 110.64338 * 298.31527 * 13 12 11 15 15 C 1.55154 * 110.71880 * 174.97661 * 13 12 11 16 16 C 1.54910 * 101.58031 * 206.13651 * 15 13 12 17 17 N 1.47426 * 104.83209 * 37.01037 * 16 15 13 18 18 C 1.36937 * 125.64487 * 155.84912 * 17 16 15 19 19 H 1.08001 * 119.99600 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00345 * 0.02772 * 18 17 16 21 21 N 1.31623 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99940 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47242 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47053 * 119.99981 * 22 20 18 25 25 H 1.48510 * 109.46679 * 239.99739 * 22 20 18 26 26 C 1.47019 * 108.70209 * 335.87354 * 17 16 15 27 27 O 1.33973 * 108.75713 * 0.22830 * 5 4 3 28 28 H 1.09008 * 109.46783 * 90.00594 * 1 2 3 29 29 H 1.08998 * 109.46883 * 209.99864 * 1 2 3 30 30 H 1.08988 * 109.47385 * 330.00518 * 1 2 3 31 31 H 1.07998 * 126.16256 * 0.02562 * 3 2 1 32 32 H 1.09007 * 109.47377 * 330.02725 * 6 5 4 33 33 H 1.08993 * 109.47444 * 210.02513 * 6 5 4 34 34 H 1.08998 * 109.47324 * 59.99623 * 8 7 6 35 35 H 1.09002 * 109.47076 * 299.99947 * 8 7 6 36 36 H 0.97006 * 120.00120 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.46837 * 59.99936 * 12 11 9 38 38 H 1.09000 * 109.47332 * 300.00307 * 12 11 9 39 39 H 0.96694 * 114.00195 * 61.68414 * 14 13 12 40 40 H 1.09002 * 111.00945 * 88.06458 * 15 13 12 41 41 H 1.08999 * 111.00353 * 324.20996 * 15 13 12 42 42 H 1.08998 * 110.36709 * 278.17139 * 16 15 13 43 43 H 1.09005 * 110.36466 * 155.84673 * 16 15 13 44 44 H 0.96993 * 120.00387 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.88389 * 120.48020 * 26 17 16 46 46 H 1.09004 * 109.87600 * 241.48978 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5781 0.6479 0.0006 5 6 3.5766 -0.6547 0.0015 6 6 4.8005 -1.5339 0.0018 7 8 5.1873 -1.8113 1.3492 8 6 6.3446 -2.6419 1.4624 9 6 6.6598 -2.8686 2.9185 10 8 5.9623 -2.3679 3.7750 11 7 7.7173 -3.6271 3.2689 12 6 8.0241 -3.8471 4.6845 13 6 9.2631 -4.7365 4.8056 14 8 9.0253 -6.0151 4.2133 15 6 9.6888 -4.8855 6.2901 16 6 11.2044 -5.1743 6.1515 17 7 11.6468 -4.3354 5.0229 18 6 12.9245 -3.8900 4.8124 19 1 13.1477 -3.2772 3.9515 20 6 13.9327 -4.2261 5.7053 21 7 13.6606 -4.9725 6.7547 22 14 15.6755 -3.6178 5.4184 23 1 15.7173 -2.8025 4.1780 24 1 16.1061 -2.7876 6.5718 25 1 16.5885 -4.7806 5.2771 26 6 10.4889 -4.0557 4.1612 27 8 2.3075 -1.0840 -0.0036 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 1.9821 2.1113 0.0004 32 1 5.6149 -1.0232 -0.5122 33 1 4.5764 -2.4688 -0.5117 34 1 7.1908 -2.1539 0.9788 35 1 6.1529 -3.5999 0.9790 36 1 8.2754 -4.0274 2.5839 37 1 7.1780 -4.3355 5.1679 38 1 8.2153 -2.8891 5.1680 39 1 8.8301 -5.9800 3.2670 40 1 9.1734 -5.7217 6.7625 41 1 9.5161 -3.9608 6.8408 42 1 11.3709 -6.2282 5.9289 43 1 11.7296 -4.8907 7.0637 44 1 14.3649 -5.2071 7.3789 45 1 10.3251 -2.9799 4.0980 46 1 10.6612 -4.4634 3.1650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484227594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:12 Heat of formation + Delta-G solvation = -100.746901 kcal Electronic energy + Delta-G solvation = -28634.131460 eV Core-core repulsion = 24332.852961 eV Total energy + Delta-G solvation = -4301.278499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.40091 -41.17140 -40.01482 -38.68609 -36.81016 -35.85034 -35.36367 -33.99711 -33.72438 -31.59302 -30.85446 -29.85337 -28.37268 -27.18605 -26.11017 -25.00215 -23.39382 -22.45704 -22.17640 -21.53372 -21.35362 -19.13113 -18.84565 -18.49712 -18.04074 -17.61689 -17.39813 -17.12283 -16.75292 -16.48175 -16.21226 -15.84075 -15.67129 -15.55184 -15.25520 -14.84802 -14.71518 -14.42470 -14.16144 -13.90687 -13.88726 -13.78359 -13.30532 -13.29029 -13.14886 -13.01048 -12.90565 -12.79495 -12.45974 -12.35837 -12.07337 -11.98468 -11.77947 -11.65066 -11.61666 -11.02764 -10.90204 -10.84825 -10.74610 -10.22158 -9.77230 -8.90063 -7.77593 -5.22455 0.23044 1.34024 1.47620 1.48428 1.54022 1.58563 1.62712 1.89761 2.48949 2.80805 3.16111 3.28843 3.32535 3.44557 3.68469 3.73773 3.77817 3.92752 3.96009 4.00302 4.09127 4.20206 4.25092 4.31626 4.48052 4.49839 4.60645 4.62519 4.66400 4.68161 4.80786 4.94943 4.98887 4.99140 5.09562 5.13745 5.25467 5.27040 5.47261 5.61425 5.79872 5.81608 6.29344 6.45041 6.62565 6.82534 7.09524 7.16796 7.76897 8.40369 9.24643 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.001753 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.055263 B =15971.115589 C =16646.948468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.492 5.492 5 C 0.166 3.834 6 C 0.160 3.840 7 O -0.398 6.398 8 C 0.049 3.951 9 C 0.510 3.490 10 O -0.577 6.577 11 N -0.710 5.710 12 C 0.121 3.879 13 C 0.128 3.872 14 O -0.553 6.553 15 C -0.122 4.122 16 C 0.160 3.840 17 N -0.623 5.623 18 C -0.238 4.238 19 H 0.085 0.915 20 C -0.069 4.069 21 N -0.949 5.949 22 Si 0.981 3.019 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.112 3.888 27 O -0.209 6.209 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.209 0.791 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.417 0.583 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.387 0.613 40 H 0.085 0.915 41 H 0.084 0.916 42 H -0.014 1.014 43 H 0.074 0.926 44 H 0.247 0.753 45 H 0.037 0.963 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.788 5.629 -18.636 31.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.206 4.206 4 N -0.223 5.223 5 C -0.040 4.040 6 C 0.084 3.916 7 O -0.317 6.317 8 C -0.030 4.030 9 C 0.297 3.703 10 O -0.456 6.456 11 N -0.365 5.365 12 C -0.004 4.004 13 C 0.086 3.914 14 O -0.361 6.361 15 C -0.161 4.161 16 C 0.034 3.966 17 N -0.349 5.349 18 C -0.367 4.367 19 H 0.103 0.897 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.809 3.191 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.013 4.013 27 O -0.096 6.096 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.226 0.774 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.254 0.746 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.236 0.764 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.004 0.996 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.534 6.148 -17.200 30.587 hybrid contribution 0.907 -0.206 -0.593 1.103 sum -23.627 5.942 -17.793 30.168 Atomic orbital electron populations 1.20555 0.80627 1.05819 1.05453 1.24433 0.96857 0.83804 1.04149 1.23629 0.87076 1.02070 1.07868 1.70386 1.24917 1.10027 1.16999 1.26183 0.84781 0.90238 1.02833 1.20809 0.88619 0.97842 0.84364 1.88002 1.46737 1.70759 1.26169 1.22443 0.90044 0.98289 0.92215 1.20925 0.79843 0.77601 0.91901 1.90737 1.50797 1.50338 1.53741 1.45652 1.30158 1.52290 1.08442 1.21737 0.96716 0.99296 0.82672 1.22161 0.91349 0.82995 0.94911 1.86602 1.92929 1.28290 1.28245 1.22904 0.97162 1.02581 0.93445 1.21649 0.90438 0.91450 0.93017 1.44703 1.04618 1.59277 1.26333 1.19512 0.84496 1.25461 1.07210 0.89712 1.25658 1.02193 1.00768 0.97507 1.70057 1.31881 1.42593 1.15377 0.84974 0.79438 0.77151 0.77530 1.18860 1.22000 1.22067 1.22150 0.87254 0.97723 0.94185 1.84392 1.18051 1.37581 1.69572 0.87677 0.89836 0.86704 0.77426 0.86393 0.86516 0.86149 0.85275 0.74585 0.90578 0.91449 0.76369 0.89650 0.89767 0.99574 0.90834 0.94357 0.94544 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 71.24 0.74 0.31 16 2 C -0.04 -0.65 7.39 24.79 0.18 -0.46 16 3 C -0.07 -1.26 11.80 83.40 0.98 -0.28 16 4 N -0.49 -11.99 11.29 -303.83 -3.43 -15.43 16 5 C 0.17 3.61 7.97 88.34 0.70 4.31 16 6 C 0.16 2.29 6.56 71.23 0.47 2.76 16 7 O -0.40 -8.57 9.86 -129.94 -1.28 -9.85 16 8 C 0.05 0.67 6.42 71.24 0.46 1.12 16 9 C 0.51 12.03 7.91 87.66 0.69 12.72 16 10 O -0.58 -20.54 16.50 16.02 0.26 -20.27 16 11 N -0.71 -14.22 5.17 -463.07 -2.40 -16.62 16 12 C 0.12 3.22 4.73 86.38 0.41 3.63 16 13 C 0.13 3.99 0.92 -9.61 -0.01 3.98 16 14 O -0.55 -16.09 13.10 -148.98 -1.95 -18.04 16 15 C -0.12 -4.57 6.26 31.99 0.20 -4.37 16 16 C 0.16 7.93 5.88 86.86 0.51 8.45 16 17 N -0.62 -31.28 3.39 -691.99 -2.35 -33.63 16 18 C -0.24 -13.07 10.27 84.03 0.86 -12.21 16 19 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 21 N -0.95 -56.66 10.09 21.65 0.22 -56.44 16 22 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 C 0.11 4.17 6.02 86.73 0.52 4.69 16 27 O -0.21 -4.41 10.78 -3.81 -0.04 -4.46 16 28 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.12 1.14 8.14 -2.38 -0.02 1.13 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.42 5.42 7.38 -92.70 -0.68 4.73 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 39 H 0.39 7.21 8.12 -74.06 -0.60 6.61 16 40 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.08 3.01 8.04 -2.39 -0.02 2.99 16 42 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.07 4.17 5.87 -2.38 -0.01 4.16 16 44 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.04 1.33 7.82 -2.39 -0.02 1.32 16 46 H 0.04 1.40 8.06 -2.38 -0.02 1.38 16 Total: -1.00 -88.38 388.15 -2.01 -90.39 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.27 Total: 15.80 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 7.19 Total: 21.25 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -7.96 Total: -122.11 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -3.01 Total: -52.62 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -88.38 -2.01 -90.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484227594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.355 kcal (2) G-P(sol) polarization free energy of solvation -88.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds