Wall clock time and date at job start Tue Mar 31 2020 22:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00220 * 2 1 4 4 H 1.48500 * 109.47200 * 269.99508 * 3 2 1 5 5 H 1.48504 * 109.47247 * 29.99711 * 3 2 1 6 6 H 1.48498 * 109.46991 * 149.99642 * 3 2 1 7 7 C 1.38809 * 119.99417 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00499 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99565 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99829 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46937 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46772 * 179.97438 * 11 10 9 13 13 O 1.42910 * 109.46850 * 179.97438 * 12 11 10 14 14 C 1.42894 * 113.99760 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46981 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47202 * 64.99770 * 15 14 13 17 17 C 1.34781 * 119.99890 * 179.97438 * 16 15 14 18 18 O 1.21487 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.48328 * 119.99629 * 180.02562 * 17 16 15 20 20 N 1.31599 * 127.15849 * 359.97438 * 19 17 16 21 21 O 1.21562 * 111.54641 * 180.02562 * 20 19 17 22 22 C 1.32812 * 111.52210 * 359.94620 * 21 20 19 23 23 C 1.35720 * 106.69976 * 0.09296 * 22 21 20 24 24 C 1.50033 * 123.86286 * 179.88704 * 23 22 21 25 25 O 1.43611 * 107.83126 * 345.31949 * 24 23 22 26 26 C 1.43001 * 114.38798 * 49.99740 * 25 24 23 27 27 C 1.50466 * 130.86255 * 180.22198 * 22 21 20 28 28 H 0.97002 * 119.99680 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00493 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47162 * 59.99799 * 10 9 7 31 31 H 1.09002 * 109.47097 * 299.99552 * 10 9 7 32 32 H 1.08996 * 109.47318 * 59.99944 * 11 10 9 33 33 H 1.09002 * 109.46901 * 299.99721 * 11 10 9 34 34 H 1.09002 * 109.47154 * 60.00435 * 12 11 10 35 35 H 1.08994 * 109.47680 * 299.99692 * 12 11 10 36 36 H 1.09007 * 109.46975 * 60.00563 * 14 13 12 37 37 H 1.08999 * 109.47322 * 300.00093 * 14 13 12 38 38 H 1.09001 * 109.46762 * 304.99801 * 15 14 13 39 39 H 1.09001 * 109.47224 * 185.00317 * 15 14 13 40 40 H 0.97000 * 119.99921 * 0.02562 * 16 15 14 41 41 H 1.08999 * 109.78994 * 225.73795 * 24 23 22 42 42 H 1.08996 * 109.83579 * 104.93114 * 24 23 22 43 43 H 1.09002 * 109.40049 * 49.71516 * 26 25 24 44 44 H 1.09003 * 109.40367 * 169.54091 * 26 25 24 45 45 H 1.09001 * 109.72390 * 44.38492 * 27 22 21 46 46 H 1.09003 * 109.82539 * 283.51966 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 6 6.3812 -3.5166 0.0017 13 8 7.7862 -3.2555 0.0011 14 6 8.5961 -4.4328 0.0022 15 6 10.0736 -4.0354 0.0021 16 7 10.3934 -3.3438 1.2533 17 6 11.6461 -2.8994 1.4765 18 8 12.5099 -3.0719 0.6398 19 6 11.9699 -2.1996 2.7436 20 7 11.1500 -1.9379 3.7391 21 8 11.7154 -1.3497 4.6403 22 6 12.9968 -1.1432 4.3589 23 6 13.2173 -1.6770 3.1307 24 6 14.5467 -1.6544 2.4357 25 8 15.3823 -0.7048 3.1157 26 6 15.4318 -0.8717 4.5351 27 6 14.0836 -0.4720 5.1541 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3623 0.0014 30 1 3.8490 -3.0424 -0.8891 31 1 3.8483 -3.0428 0.8909 32 1 5.8796 -1.6199 0.8910 33 1 5.8796 -1.6200 -0.8890 34 1 6.1179 -4.0885 -0.8881 35 1 6.1178 -4.0878 0.8919 36 1 8.3785 -5.0243 -0.8872 37 1 8.3789 -5.0224 0.8929 38 1 10.2714 -3.3726 -0.8403 39 1 10.6904 -4.9297 -0.0867 40 1 9.7037 -3.2063 1.9214 41 1 14.4149 -1.3525 1.3967 42 1 15.0027 -2.6436 2.4773 43 1 15.6428 -1.9151 4.7698 44 1 16.2202 -0.2415 4.9466 45 1 14.0397 -0.8048 6.1911 46 1 13.9616 0.6102 5.1069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485795724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:38 Heat of formation + Delta-G solvation = -49.542419 kcal Electronic energy + Delta-G solvation = -28215.413659 eV Core-core repulsion = 23916.355552 eV Total energy + Delta-G solvation = -4299.058106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.64440 -40.09814 -39.42346 -38.31911 -35.70470 -34.97916 -34.59855 -33.76135 -32.38922 -31.29109 -30.55860 -29.40236 -27.09605 -25.47860 -24.98251 -24.55208 -22.66931 -22.20894 -21.66274 -21.01873 -20.53699 -18.52405 -18.37706 -17.56575 -17.39970 -16.97880 -16.83281 -16.55619 -16.10952 -15.82883 -15.48344 -15.38837 -14.89448 -14.57351 -14.28083 -14.26230 -14.05827 -13.76898 -13.65431 -13.41113 -13.20965 -12.71753 -12.36996 -12.36878 -12.08326 -11.93966 -11.73205 -11.64570 -11.04749 -10.94631 -10.91541 -10.77319 -10.73660 -10.66584 -10.47677 -10.13428 -9.75869 -9.71122 -9.60036 -9.56080 -8.90280 -7.24586 -5.77376 -3.13329 0.58770 1.04353 2.22236 2.49548 2.69726 3.07625 3.37377 3.38973 3.42438 3.46261 3.50265 3.87364 4.05998 4.21626 4.37644 4.47522 4.51846 4.59564 4.72823 4.76727 4.80905 4.91478 4.98419 4.99871 5.11013 5.12629 5.14036 5.21258 5.24788 5.40894 5.43639 5.48028 5.52470 5.73534 5.88132 5.93657 5.94296 6.19141 6.41616 6.67614 6.72474 6.91621 7.02822 7.43552 7.63129 7.98303 8.41628 9.20435 9.92941 10.12746 11.40862 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.001854 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.088156 B =15102.369689 C =16530.938074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.161 3.839 11 C -0.129 4.129 12 C 0.068 3.932 13 O -0.388 6.388 14 C 0.047 3.953 15 C 0.122 3.878 16 N -0.705 5.705 17 C 0.600 3.400 18 O -0.522 6.522 19 C -0.005 4.005 20 N -0.330 5.330 21 O 0.137 5.863 22 C -0.026 4.026 23 C -0.202 4.202 24 C 0.141 3.859 25 O -0.374 6.374 26 C 0.061 3.939 27 C -0.071 4.071 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.413 0.587 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.565 -7.911 9.903 37.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.033 3.967 11 C -0.167 4.167 12 C -0.009 4.009 13 O -0.308 6.308 14 C -0.030 4.030 15 C -0.001 4.001 16 N -0.357 5.357 17 C 0.384 3.616 18 O -0.397 6.397 19 C -0.163 4.163 20 N -0.033 5.033 21 O 0.064 5.936 22 C -0.091 4.091 23 C -0.207 4.207 24 C 0.064 3.936 25 O -0.292 6.292 26 C -0.017 4.017 27 C -0.109 4.109 28 H 0.070 0.930 29 H 0.194 0.806 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.248 0.752 41 H 0.139 0.861 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 34.779 -8.095 9.319 36.904 hybrid contribution 0.314 0.857 0.235 0.942 sum 35.093 -7.239 9.554 37.083 Atomic orbital electron populations 1.69708 1.05091 1.25870 1.57488 1.24682 0.95284 0.97291 1.01934 0.86524 0.79232 0.84812 0.77847 1.21005 1.21649 1.20285 1.19059 0.80549 0.94807 1.43203 0.89187 1.42684 1.04092 1.02195 1.91224 1.20487 0.87875 0.89590 0.98716 1.21720 0.95610 0.96132 1.03226 1.22497 0.79531 0.98422 1.00402 1.87922 1.17445 1.29907 1.95505 1.22722 0.89772 0.88766 1.01713 1.21531 0.94072 0.97946 0.86513 1.45789 1.10634 1.57958 1.21365 1.16773 0.82967 0.78265 0.83607 1.90796 1.47364 1.56909 1.44643 1.22800 0.91515 1.04952 0.97006 1.74727 1.20137 1.10648 0.97742 1.84672 1.19568 1.53715 1.35616 1.23995 0.86444 1.02050 0.96587 1.21365 0.98122 1.04642 0.96618 1.20983 0.82653 0.93674 0.96254 1.88151 1.66959 1.55390 1.18703 1.22763 0.95299 1.02161 0.81442 1.21061 0.89086 1.01462 0.99325 0.93032 0.80559 0.95409 0.95479 0.91249 0.91180 0.92926 0.93029 0.91100 0.92478 0.89859 0.89425 0.75161 0.86092 0.90342 0.91981 0.86703 0.87478 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 22.61 27.74 -169.99 -4.71 17.90 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.25 -7.16 10.47 -15.06 -0.16 -7.32 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.76 -18.59 5.41 -59.90 -0.32 -18.91 16 10 C 0.16 3.13 6.26 -4.04 -0.03 3.10 16 11 C -0.13 -2.04 5.70 -26.73 -0.15 -2.19 16 12 C 0.07 0.85 5.94 37.16 0.22 1.07 16 13 O -0.39 -4.72 10.29 -35.23 -0.36 -5.08 16 14 C 0.05 0.40 6.07 37.16 0.23 0.63 16 15 C 0.12 1.07 6.06 -4.04 -0.02 1.05 16 16 N -0.71 -7.19 5.50 -61.10 -0.34 -7.52 16 17 C 0.60 6.99 7.85 -12.11 -0.10 6.90 16 18 O -0.52 -6.94 16.29 5.38 0.09 -6.85 16 19 C 0.00 -0.05 7.18 -82.90 -0.60 -0.65 16 20 N -0.33 -3.68 11.90 33.26 0.40 -3.29 16 21 O 0.14 1.31 11.17 20.05 0.22 1.53 16 22 C -0.03 -0.20 7.49 -35.32 -0.26 -0.46 16 23 C -0.20 -1.90 6.15 -104.93 -0.65 -2.54 16 24 C 0.14 1.13 6.67 35.68 0.24 1.37 16 25 O -0.37 -2.78 10.76 -35.23 -0.38 -3.16 16 26 C 0.06 0.23 6.78 37.49 0.25 0.48 16 27 C -0.07 -0.26 6.54 -27.66 -0.18 -0.44 16 28 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 29 H 0.36 8.71 5.53 -40.82 -0.23 8.48 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.41 4.11 8.25 -40.82 -0.34 3.77 16 41 H 0.12 1.05 8.00 -51.93 -0.42 0.64 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.18 8.10 -51.93 -0.42 -0.24 16 44 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 46 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -36.00 388.65 -6.98 -42.99 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.91 Total: 4.49 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.30 Total: 1.01 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.51 Total: -58.69 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.43 Total: -13.56 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.00 -6.98 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485795724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.557 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds