Wall clock time and date at job start Tue Mar 31 2020 22:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00220 * 2 1 4 4 H 1.48500 * 109.47200 * 269.99508 * 3 2 1 5 5 H 1.48504 * 109.47247 * 29.99711 * 3 2 1 6 6 H 1.48498 * 109.46991 * 149.99642 * 3 2 1 7 7 C 1.38809 * 119.99417 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00499 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99565 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99829 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46937 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46772 * 179.97438 * 11 10 9 13 13 O 1.42910 * 109.46850 * 179.97438 * 12 11 10 14 14 C 1.42894 * 113.99760 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46981 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47202 * 64.99770 * 15 14 13 17 17 C 1.34781 * 119.99890 * 179.97438 * 16 15 14 18 18 O 1.21487 * 119.99801 * 0.02562 * 17 16 15 19 19 C 1.48328 * 119.99629 * 180.02562 * 17 16 15 20 20 N 1.31599 * 127.15849 * 359.97438 * 19 17 16 21 21 O 1.21562 * 111.54641 * 180.02562 * 20 19 17 22 22 C 1.32812 * 111.52210 * 359.94620 * 21 20 19 23 23 C 1.35720 * 106.69976 * 0.09296 * 22 21 20 24 24 C 1.50033 * 123.86286 * 179.88704 * 23 22 21 25 25 O 1.43611 * 107.83126 * 345.31949 * 24 23 22 26 26 C 1.43001 * 114.38798 * 49.99740 * 25 24 23 27 27 C 1.50466 * 130.86255 * 180.22198 * 22 21 20 28 28 H 0.97002 * 119.99680 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00493 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47162 * 59.99799 * 10 9 7 31 31 H 1.09002 * 109.47097 * 299.99552 * 10 9 7 32 32 H 1.08996 * 109.47318 * 59.99944 * 11 10 9 33 33 H 1.09002 * 109.46901 * 299.99721 * 11 10 9 34 34 H 1.09002 * 109.47154 * 60.00435 * 12 11 10 35 35 H 1.08994 * 109.47680 * 299.99692 * 12 11 10 36 36 H 1.09007 * 109.46975 * 60.00563 * 14 13 12 37 37 H 1.08999 * 109.47322 * 300.00093 * 14 13 12 38 38 H 1.09001 * 109.46762 * 304.99801 * 15 14 13 39 39 H 1.09001 * 109.47224 * 185.00317 * 15 14 13 40 40 H 0.97000 * 119.99921 * 0.02562 * 16 15 14 41 41 H 1.08999 * 109.78994 * 225.73795 * 24 23 22 42 42 H 1.08996 * 109.83579 * 104.93114 * 24 23 22 43 43 H 1.09002 * 109.40049 * 49.71516 * 26 25 24 44 44 H 1.09003 * 109.40367 * 169.54091 * 26 25 24 45 45 H 1.09001 * 109.72390 * 44.38492 * 27 22 21 46 46 H 1.09003 * 109.82539 * 283.51966 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 6 6.3812 -3.5166 0.0017 13 8 7.7862 -3.2555 0.0011 14 6 8.5961 -4.4328 0.0022 15 6 10.0736 -4.0354 0.0021 16 7 10.3934 -3.3438 1.2533 17 6 11.6461 -2.8994 1.4765 18 8 12.5099 -3.0719 0.6398 19 6 11.9699 -2.1996 2.7436 20 7 11.1500 -1.9379 3.7391 21 8 11.7154 -1.3497 4.6403 22 6 12.9968 -1.1432 4.3589 23 6 13.2173 -1.6770 3.1307 24 6 14.5467 -1.6544 2.4357 25 8 15.3823 -0.7048 3.1157 26 6 15.4318 -0.8717 4.5351 27 6 14.0836 -0.4720 5.1541 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3623 0.0014 30 1 3.8490 -3.0424 -0.8891 31 1 3.8483 -3.0428 0.8909 32 1 5.8796 -1.6199 0.8910 33 1 5.8796 -1.6200 -0.8890 34 1 6.1179 -4.0885 -0.8881 35 1 6.1178 -4.0878 0.8919 36 1 8.3785 -5.0243 -0.8872 37 1 8.3789 -5.0224 0.8929 38 1 10.2714 -3.3726 -0.8403 39 1 10.6904 -4.9297 -0.0867 40 1 9.7037 -3.2063 1.9214 41 1 14.4149 -1.3525 1.3967 42 1 15.0027 -2.6436 2.4773 43 1 15.6428 -1.9151 4.7698 44 1 16.2202 -0.2415 4.9466 45 1 14.0397 -0.8048 6.1911 46 1 13.9616 0.6102 5.1069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485795724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:37 Heat of formation + Delta-G solvation = -77.525377 kcal Electronic energy + Delta-G solvation = -28216.627091 eV Core-core repulsion = 23916.355552 eV Total energy + Delta-G solvation = -4300.271538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.36720 -40.94482 -39.91292 -39.22526 -37.25166 -36.05509 -35.32018 -34.31824 -34.18153 -32.29368 -31.71766 -30.41356 -27.73973 -26.94942 -25.83590 -24.99661 -23.97378 -23.39068 -22.49765 -22.35611 -21.23995 -19.67744 -19.19739 -19.04676 -18.10415 -17.87993 -17.61404 -17.15762 -16.85724 -16.63435 -16.59330 -16.29547 -15.91738 -15.70100 -15.56736 -15.41182 -14.94495 -14.72247 -14.67023 -14.46993 -14.06870 -13.83813 -13.63351 -13.43625 -12.91631 -12.87626 -12.78238 -12.69792 -12.36238 -12.18322 -12.07794 -12.04454 -11.97334 -11.83491 -11.62026 -11.60517 -11.01439 -10.95442 -10.61102 -10.37542 -10.31912 -9.34972 -8.06707 -5.41038 -0.16261 0.37633 1.36030 1.38785 1.46269 1.58913 1.78382 1.86540 2.45117 2.50158 2.57433 2.81218 3.24556 3.36001 3.48587 3.61685 3.67107 3.85000 3.95428 4.03622 4.11758 4.12669 4.20114 4.28734 4.28787 4.32929 4.41384 4.46024 4.52603 4.64317 4.67616 4.68892 4.74535 4.77195 4.80855 4.87952 4.96756 5.11087 5.24611 5.26968 5.71061 5.98736 6.09629 6.15968 6.19421 6.69680 6.83152 7.03304 7.79390 7.97937 9.14473 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.001854 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.088156 B =15102.369689 C =16530.938074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.255 1.255 7 C -0.240 4.240 8 H 0.059 0.941 9 N -0.762 5.762 10 C 0.157 3.843 11 C -0.118 4.118 12 C 0.075 3.925 13 O -0.408 6.408 14 C 0.048 3.952 15 C 0.122 3.878 16 N -0.701 5.701 17 C 0.597 3.403 18 O -0.546 6.546 19 C -0.022 4.022 20 N -0.351 5.351 21 O 0.136 5.864 22 C -0.013 4.013 23 C -0.222 4.222 24 C 0.146 3.854 25 O -0.391 6.391 26 C 0.053 3.947 27 C -0.069 4.069 28 H 0.259 0.741 29 H 0.366 0.634 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.414 0.586 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.144 0.856 45 H 0.138 0.862 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.174 -7.708 11.010 40.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.179 1.179 7 C -0.371 4.371 8 H 0.077 0.923 9 N -0.408 5.408 10 C 0.031 3.969 11 C -0.156 4.156 12 C -0.001 4.001 13 O -0.329 6.329 14 C -0.029 4.029 15 C -0.001 4.001 16 N -0.353 5.353 17 C 0.381 3.619 18 O -0.423 6.423 19 C -0.179 4.179 20 N -0.053 5.053 21 O 0.063 5.937 22 C -0.079 4.079 23 C -0.228 4.228 24 C 0.069 3.931 25 O -0.309 6.309 26 C -0.024 4.024 27 C -0.107 4.107 28 H 0.068 0.932 29 H 0.199 0.801 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.250 0.750 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.162 0.838 45 H 0.156 0.844 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 37.422 -7.931 10.432 39.650 hybrid contribution -0.461 0.701 -0.060 0.841 sum 36.961 -7.231 10.371 39.063 Atomic orbital electron populations 1.69883 1.07047 1.26806 1.59410 1.25537 0.96206 1.01351 1.02434 0.85386 0.78547 0.79521 0.78200 1.20293 1.21894 1.17944 1.19066 0.82616 0.93687 1.41747 0.92274 1.42741 1.02660 1.04290 1.91109 1.20658 0.89964 0.87535 0.98786 1.21535 0.93263 0.98087 1.02755 1.22327 0.79679 0.96375 1.01741 1.87875 1.17271 1.31961 1.95752 1.22898 0.88634 0.87857 1.03484 1.21643 0.94786 0.98200 0.85443 1.45863 1.10179 1.57487 1.21752 1.16936 0.83136 0.78187 0.83687 1.90771 1.48031 1.58032 1.45444 1.22894 0.92462 1.05600 0.96988 1.74699 1.20792 1.11687 0.98170 1.84635 1.20460 1.53376 1.35189 1.24745 0.86161 1.00545 0.96407 1.21617 0.98183 1.05436 0.97594 1.20861 0.82420 0.94147 0.95640 1.88126 1.66621 1.55310 1.20854 1.23109 0.96125 1.03592 0.79534 1.21361 0.87192 1.01776 1.00321 0.93205 0.80138 0.95041 0.95195 0.91793 0.91577 0.91563 0.91757 0.88987 0.90919 0.91072 0.87706 0.75036 0.87603 0.89650 0.91079 0.83845 0.84360 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.70 13.97 21.65 0.30 -63.40 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 46.54 27.74 68.60 1.90 48.45 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.25 -11.33 6.52 99.48 0.65 -10.69 16 7 C -0.24 -14.08 10.47 84.03 0.88 -13.20 16 8 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 9 N -0.76 -36.78 5.41 -343.44 -1.86 -38.64 16 10 C 0.16 5.91 6.26 86.38 0.54 6.45 16 11 C -0.12 -3.53 5.70 30.60 0.17 -3.35 16 12 C 0.08 1.69 5.94 71.98 0.43 2.12 16 13 O -0.41 -9.08 10.29 -148.98 -1.53 -10.61 16 14 C 0.05 0.70 6.07 71.98 0.44 1.13 16 15 C 0.12 1.98 6.06 86.38 0.52 2.51 16 16 N -0.70 -13.97 5.50 -465.51 -2.56 -16.53 16 17 C 0.60 14.05 7.85 86.93 0.68 14.73 16 18 O -0.55 -14.80 16.29 -3.68 -0.06 -14.86 16 19 C -0.02 -0.50 7.18 42.46 0.30 -0.19 16 20 N -0.35 -7.77 11.90 -48.98 -0.58 -8.35 16 21 O 0.14 2.48 11.17 81.74 0.91 3.39 16 22 C -0.01 -0.19 7.49 25.03 0.19 0.00 16 23 C -0.22 -4.12 6.15 -20.06 -0.12 -4.24 16 24 C 0.15 2.34 6.67 71.03 0.47 2.82 16 25 O -0.39 -5.33 10.76 -148.98 -1.60 -6.93 16 26 C 0.05 0.26 6.78 72.20 0.49 0.75 16 27 C -0.07 -0.31 6.54 29.99 0.20 -0.12 16 28 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.37 16.94 5.53 -92.71 -0.51 16.43 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.41 8.01 8.25 -92.71 -0.76 7.25 16 41 H 0.11 1.95 8.00 -2.39 -0.02 1.93 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 0.24 8.10 -2.39 -0.02 0.22 16 44 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.14 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -79.15 388.65 0.26 -78.89 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.32 Total: 22.54 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.66 Total: 6.04 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -4.70 Total: -126.91 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -2.28 Total: -29.01 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.90 Total: 48.45 kcal Total: -79.15 0.26 -78.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485795724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.362 kcal (2) G-P(sol) polarization free energy of solvation -79.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds