Wall clock time and date at job start Tue Mar 31 2020 22:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99806 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99987 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38809 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00400 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99878 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46954 * 324.99570 * 10 9 7 12 12 C 1.52996 * 109.47287 * 84.99917 * 10 9 7 13 13 O 1.42900 * 109.47256 * 64.99706 * 12 10 9 14 14 C 1.52999 * 109.46947 * 204.99862 * 10 9 7 15 15 N 1.46504 * 109.47370 * 54.99792 * 14 10 9 16 16 C 1.34775 * 120.00172 * 180.02562 * 15 14 10 17 17 O 1.21279 * 119.99864 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00090 * 180.02562 * 16 15 14 19 19 H 1.09008 * 110.62821 * 303.10515 * 18 16 15 20 20 C 1.55144 * 110.70780 * 66.39870 * 18 16 15 21 21 C 1.54897 * 101.65393 * 154.03665 * 20 18 16 22 22 N 1.47847 * 104.79730 * 322.93302 * 21 20 18 23 23 C 1.46904 * 111.00192 * 146.36434 * 22 21 20 24 24 C 1.53003 * 109.47142 * 69.15399 * 23 22 21 25 25 F 1.39907 * 109.46841 * 60.00053 * 24 23 22 26 26 F 1.39896 * 109.46911 * 180.02562 * 24 23 22 27 27 F 1.39906 * 109.47217 * 300.00424 * 24 23 22 28 28 C 1.47437 * 108.56525 * 24.09514 * 22 21 20 29 29 H 0.97001 * 119.99542 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99707 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46929 * 185.00159 * 12 10 9 32 32 H 1.09004 * 109.47075 * 304.99517 * 12 10 9 33 33 H 0.96699 * 113.99999 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47619 * 174.99741 * 14 10 9 35 35 H 1.09003 * 109.47202 * 294.99855 * 14 10 9 36 36 H 0.97002 * 119.99776 * 0.02562 * 15 14 10 37 37 H 1.08998 * 110.99205 * 272.13383 * 20 18 16 38 38 H 1.09004 * 110.98604 * 35.94494 * 20 18 16 39 39 H 1.08997 * 110.37413 * 204.10134 * 21 20 18 40 40 H 1.09003 * 110.37527 * 81.76207 * 21 20 18 41 41 H 1.08996 * 109.47103 * 189.15437 * 23 22 21 42 42 H 1.08997 * 109.46848 * 309.15759 * 23 22 21 43 43 H 1.09009 * 109.88902 * 239.60007 * 28 22 21 44 44 H 1.09001 * 110.02338 * 118.49833 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2851 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9689 -3.5504 -0.5890 12 6 2.4221 -4.0356 1.4375 13 8 1.2280 -4.2885 2.1804 14 6 1.1810 -4.7521 -0.6091 15 7 0.7343 -4.3355 -1.9407 16 6 -0.0555 -5.1473 -2.6711 17 8 -0.3968 -6.2225 -2.2259 18 6 -0.5146 -4.7190 -4.0411 19 1 -1.0449 -3.7680 -3.9885 20 6 0.6867 -4.6281 -5.0187 21 6 -0.0038 -4.8616 -6.3854 22 7 -1.0498 -5.8703 -6.1126 23 6 -2.2302 -5.6467 -6.9580 24 6 -1.8829 -5.9659 -8.4136 25 9 -1.4830 -7.3027 -8.5152 26 9 -3.0069 -5.7523 -9.2187 27 9 -0.8411 -5.1340 -8.8377 28 6 -1.4037 -5.8047 -4.6829 29 1 -0.4849 -0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 3.0427 -4.9316 1.4309 32 1 2.9718 -3.2163 1.9011 33 1 1.3832 -4.5352 3.1025 34 1 1.7559 -5.6746 -0.6909 35 1 0.3135 -4.9201 0.0291 36 1 1.0070 -3.4753 -2.2966 37 1 1.1493 -3.6420 -4.9783 38 1 1.4180 -5.4096 -4.8121 39 1 0.7126 -5.2448 -7.1120 40 1 -0.4536 -3.9367 -6.7463 41 1 -3.0418 -6.2949 -6.6276 42 1 -2.5416 -4.6052 -6.8789 43 1 -1.2133 -6.7678 -4.2091 44 1 -2.4545 -5.5378 -4.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486027513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:15 Heat of formation + Delta-G solvation = -222.501380 kcal Electronic energy + Delta-G solvation = -30227.438668 eV Core-core repulsion = 25379.023758 eV Total energy + Delta-G solvation = -4848.414910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.31081 -47.87546 -47.73767 -40.25428 -38.46983 -37.20088 -35.06684 -33.80954 -33.20980 -31.39931 -29.40463 -28.68705 -27.91562 -25.43299 -23.62269 -23.42124 -22.32876 -21.43670 -20.34190 -19.68243 -18.79434 -18.66831 -17.91020 -17.76839 -17.18119 -16.76096 -16.18519 -15.78496 -15.14969 -15.10264 -14.76936 -14.64300 -14.42449 -14.30316 -14.23084 -14.06524 -13.93396 -13.90230 -13.74248 -13.51487 -13.45249 -13.27793 -12.96919 -12.75694 -12.23290 -12.04307 -11.81923 -11.59146 -11.57231 -11.36122 -11.02420 -10.91728 -10.81274 -10.49818 -10.07852 -9.67409 -9.53515 -9.24895 -9.04714 -8.87848 -8.71856 -7.17133 -6.20277 -3.21998 2.42955 2.79815 3.17678 3.43793 3.44486 3.47227 3.55362 3.64557 3.75650 4.07984 4.30160 4.38299 4.55840 4.68731 4.79226 4.81623 4.85821 5.00936 5.11363 5.14605 5.28211 5.33244 5.40486 5.48442 5.61695 5.66531 5.77919 5.82417 5.90152 5.90697 5.98917 6.22418 6.35270 6.37644 6.40086 6.60316 6.77847 7.67261 7.80469 8.08635 8.44313 8.65477 9.09762 9.96644 10.12024 11.27252 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.002524 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.867775 B =11089.081704 C =12472.220301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.040 4.040 3 Si 1.079 2.921 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.339 4.339 8 H 0.064 0.936 9 N -0.724 5.724 10 C 0.171 3.829 11 H 0.066 0.934 12 C 0.059 3.941 13 O -0.562 6.562 14 C 0.117 3.883 15 N -0.711 5.711 16 C 0.522 3.478 17 O -0.549 6.549 18 C -0.134 4.134 19 H 0.105 0.895 20 C -0.117 4.117 21 C 0.034 3.966 22 N -0.522 5.522 23 C 0.002 3.998 24 C 0.458 3.542 25 F -0.174 7.174 26 F -0.186 7.186 27 F -0.183 7.183 28 C 0.060 3.940 29 H 0.257 0.743 30 H 0.371 0.629 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.365 0.635 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.409 0.591 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 -11.428 -13.055 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.238 4.238 3 Si 0.909 3.091 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.211 1.211 7 C -0.470 4.470 8 H 0.082 0.918 9 N -0.367 5.367 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.362 5.362 16 C 0.307 3.693 17 O -0.428 6.428 18 C -0.156 4.156 19 H 0.123 0.877 20 C -0.155 4.155 21 C -0.093 4.093 22 N -0.246 5.246 23 C -0.128 4.128 24 C 0.403 3.597 25 F -0.155 7.155 26 F -0.167 7.167 27 F -0.165 7.165 28 C -0.067 4.067 29 H 0.068 0.932 30 H 0.205 0.795 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.210 0.790 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.245 0.755 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.139 0.861 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.193 -10.843 -13.473 17.335 hybrid contribution 0.140 -0.539 0.496 0.746 sum -1.054 -11.383 -12.976 17.293 Atomic orbital electron populations 1.70876 1.06061 1.28632 1.52691 1.25744 0.97001 1.00932 1.00127 0.83262 0.74243 0.75714 0.75841 1.22225 1.22332 1.21052 1.20011 0.91900 0.85705 1.49380 0.91788 1.42368 1.05032 1.00048 1.89276 1.20523 0.94968 0.86491 0.91977 0.91572 1.23016 0.86511 0.97373 0.95313 1.86543 1.32264 1.91912 1.25859 1.21570 0.99498 0.96975 0.82677 1.45986 1.50513 1.21759 1.17930 1.20103 0.78425 0.84455 0.86288 1.90666 1.57096 1.22758 1.72255 1.22512 0.98495 1.01062 0.93525 0.87654 1.22718 0.96592 1.03593 0.92589 1.23358 0.94252 0.93580 0.98078 1.63628 1.07380 1.48740 1.04901 1.23485 0.96415 1.04285 0.88661 1.20446 0.74278 0.74842 0.90108 1.93209 1.90822 1.34659 1.96822 1.93187 1.52416 1.94686 1.76427 1.93180 1.59443 1.72045 1.91814 1.22776 0.97990 1.00812 0.85092 0.93207 0.79488 0.95376 0.93249 0.78999 0.91992 0.90688 0.75511 0.89301 0.89823 0.89016 0.92321 0.86131 0.89821 0.87352 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.69 13.70 55.49 0.76 -26.93 16 2 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 3 Si 1.08 24.57 29.92 -169.99 -5.09 19.49 16 4 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.34 -8.78 9.93 -15.06 -0.15 -8.93 16 8 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 9 N -0.72 -16.65 4.51 -53.43 -0.24 -16.89 16 10 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 11 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 12 C 0.06 1.01 6.86 37.16 0.25 1.26 16 13 O -0.56 -9.81 12.64 -35.23 -0.45 -10.25 16 14 C 0.12 2.00 5.12 -4.04 -0.02 1.98 16 15 N -0.71 -11.26 5.39 -60.29 -0.32 -11.59 16 16 C 0.52 8.02 7.13 -10.99 -0.08 7.94 16 17 O -0.55 -10.10 15.42 5.56 0.09 -10.02 16 18 C -0.13 -1.56 3.33 -89.95 -0.30 -1.86 16 19 H 0.11 1.17 8.14 -51.92 -0.42 0.74 16 20 C -0.12 -1.18 6.51 -24.60 -0.16 -1.34 16 21 C 0.03 0.32 5.08 -2.30 -0.01 0.31 16 22 N -0.52 -5.17 5.09 -231.26 -1.18 -6.35 16 23 C 0.00 0.01 4.69 -3.82 -0.02 0.00 16 24 C 0.46 4.19 3.26 37.16 0.12 4.31 16 25 F -0.17 -1.86 17.24 2.25 0.04 -1.82 16 26 F -0.19 -1.72 17.32 2.25 0.04 -1.68 16 27 F -0.18 -1.81 14.70 2.25 0.03 -1.78 16 28 C 0.06 0.66 6.28 -2.84 -0.02 0.64 16 29 H 0.26 7.55 6.77 -40.82 -0.28 7.28 16 30 H 0.37 9.25 6.63 -40.82 -0.27 8.98 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.37 4.57 9.12 45.56 0.42 4.99 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.45 7.39 -51.93 -0.38 1.07 16 36 H 0.41 6.51 8.14 -40.82 -0.33 6.18 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 39 H 0.09 0.86 7.52 -51.93 -0.39 0.47 16 40 H 0.06 0.50 7.36 -51.93 -0.38 0.12 16 41 H 0.12 0.78 8.03 -51.93 -0.42 0.36 16 42 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 43 H 0.11 1.41 6.81 -51.92 -0.35 1.06 16 44 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -32.23 371.61 -6.73 -38.96 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -5.35 Total: 17.15 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.67 Total: 6.11 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.98 Total: -61.76 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.36 Total: -20.27 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.11 Total: -5.28 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.09 Total: 19.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.23 -6.73 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486027513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.542 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds