Wall clock time and date at job start Tue Mar 31 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99806 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99987 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38809 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00400 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99878 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46954 * 324.99570 * 10 9 7 12 12 C 1.52996 * 109.47287 * 84.99917 * 10 9 7 13 13 O 1.42900 * 109.47256 * 64.99706 * 12 10 9 14 14 C 1.52999 * 109.46947 * 204.99862 * 10 9 7 15 15 N 1.46504 * 109.47370 * 54.99792 * 14 10 9 16 16 C 1.34775 * 120.00172 * 180.02562 * 15 14 10 17 17 O 1.21279 * 119.99864 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00090 * 180.02562 * 16 15 14 19 19 H 1.09008 * 110.62821 * 303.10515 * 18 16 15 20 20 C 1.55144 * 110.70780 * 66.39870 * 18 16 15 21 21 C 1.54897 * 101.65393 * 154.03665 * 20 18 16 22 22 N 1.47847 * 104.79730 * 322.93302 * 21 20 18 23 23 C 1.46904 * 111.00192 * 146.36434 * 22 21 20 24 24 C 1.53003 * 109.47142 * 69.15399 * 23 22 21 25 25 F 1.39907 * 109.46841 * 60.00053 * 24 23 22 26 26 F 1.39896 * 109.46911 * 180.02562 * 24 23 22 27 27 F 1.39906 * 109.47217 * 300.00424 * 24 23 22 28 28 C 1.47437 * 108.56525 * 24.09514 * 22 21 20 29 29 H 0.97001 * 119.99542 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99707 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46929 * 185.00159 * 12 10 9 32 32 H 1.09004 * 109.47075 * 304.99517 * 12 10 9 33 33 H 0.96699 * 113.99999 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47619 * 174.99741 * 14 10 9 35 35 H 1.09003 * 109.47202 * 294.99855 * 14 10 9 36 36 H 0.97002 * 119.99776 * 0.02562 * 15 14 10 37 37 H 1.08998 * 110.99205 * 272.13383 * 20 18 16 38 38 H 1.09004 * 110.98604 * 35.94494 * 20 18 16 39 39 H 1.08997 * 110.37413 * 204.10134 * 21 20 18 40 40 H 1.09003 * 110.37527 * 81.76207 * 21 20 18 41 41 H 1.08996 * 109.47103 * 189.15437 * 23 22 21 42 42 H 1.08997 * 109.46848 * 309.15759 * 23 22 21 43 43 H 1.09009 * 109.88902 * 239.60007 * 28 22 21 44 44 H 1.09001 * 110.02338 * 118.49833 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2851 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9689 -3.5504 -0.5890 12 6 2.4221 -4.0356 1.4375 13 8 1.2280 -4.2885 2.1804 14 6 1.1810 -4.7521 -0.6091 15 7 0.7343 -4.3355 -1.9407 16 6 -0.0555 -5.1473 -2.6711 17 8 -0.3968 -6.2225 -2.2259 18 6 -0.5146 -4.7190 -4.0411 19 1 -1.0449 -3.7680 -3.9885 20 6 0.6867 -4.6281 -5.0187 21 6 -0.0038 -4.8616 -6.3854 22 7 -1.0498 -5.8703 -6.1126 23 6 -2.2302 -5.6467 -6.9580 24 6 -1.8829 -5.9659 -8.4136 25 9 -1.4830 -7.3027 -8.5152 26 9 -3.0069 -5.7523 -9.2187 27 9 -0.8411 -5.1340 -8.8377 28 6 -1.4037 -5.8047 -4.6829 29 1 -0.4849 -0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 3.0427 -4.9316 1.4309 32 1 2.9718 -3.2163 1.9011 33 1 1.3832 -4.5352 3.1025 34 1 1.7559 -5.6746 -0.6909 35 1 0.3135 -4.9201 0.0291 36 1 1.0070 -3.4753 -2.2966 37 1 1.1493 -3.6420 -4.9783 38 1 1.4180 -5.4096 -4.8121 39 1 0.7126 -5.2448 -7.1120 40 1 -0.4536 -3.9367 -6.7463 41 1 -3.0418 -6.2949 -6.6276 42 1 -2.5416 -4.6052 -6.8789 43 1 -1.2133 -6.7678 -4.2091 44 1 -2.4545 -5.5378 -4.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486027513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:14 Heat of formation + Delta-G solvation = -248.875784 kcal Electronic energy + Delta-G solvation = -30228.582348 eV Core-core repulsion = 25379.023758 eV Total energy + Delta-G solvation = -4849.558590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.04945 -48.60456 -48.50636 -41.34390 -39.53485 -38.60822 -36.55585 -35.42694 -34.12216 -33.01603 -30.33360 -29.90264 -29.14172 -26.72353 -25.51476 -24.24245 -23.34454 -22.22441 -21.82020 -20.85262 -19.57256 -19.52484 -19.40523 -18.72714 -18.33569 -18.20446 -17.37951 -16.85224 -16.47146 -16.23187 -15.82625 -15.58079 -15.54200 -15.40415 -15.36302 -15.10713 -14.99578 -14.97085 -14.71847 -14.69221 -14.60820 -14.46920 -13.88785 -13.72565 -13.45518 -13.09903 -13.00446 -12.74804 -12.70222 -12.53325 -12.37043 -12.24762 -12.03905 -11.88480 -11.87904 -11.27301 -11.03949 -10.83642 -10.78735 -10.07739 -9.62057 -9.10653 -8.32226 -5.27728 1.57374 1.62298 1.70620 1.72126 1.86582 2.17449 2.52018 2.73670 2.86270 3.08088 3.26904 3.43362 3.49922 3.51787 3.53612 3.74208 3.81111 3.93132 4.06783 4.18481 4.23581 4.25167 4.31776 4.34378 4.46795 4.52654 4.53605 4.76246 4.84023 4.89702 4.91172 4.98923 5.08435 5.13789 5.44547 5.59895 5.64614 5.68102 6.52754 6.53964 6.96128 7.11397 7.18806 8.01011 8.15186 9.18323 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.002524 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.867775 B =11089.081704 C =12472.220301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.100 4.100 3 Si 1.124 2.876 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.300 1.300 7 C -0.325 4.325 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.167 3.833 11 H 0.077 0.923 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.129 3.871 15 N -0.710 5.710 16 C 0.520 3.480 17 O -0.582 6.582 18 C -0.129 4.129 19 H 0.116 0.884 20 C -0.111 4.111 21 C 0.038 3.962 22 N -0.533 5.533 23 C 0.003 3.997 24 C 0.458 3.542 25 F -0.185 7.185 26 F -0.186 7.186 27 F -0.188 7.188 28 C 0.067 3.933 29 H 0.243 0.757 30 H 0.359 0.641 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.386 0.614 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.410 0.590 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 -11.386 -13.794 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.292 4.292 3 Si 0.950 3.050 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.226 1.226 7 C -0.456 4.456 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.058 3.942 11 H 0.095 0.905 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.361 5.361 16 C 0.307 3.693 17 O -0.462 6.462 18 C -0.151 4.151 19 H 0.134 0.866 20 C -0.149 4.149 21 C -0.089 4.089 22 N -0.258 5.258 23 C -0.127 4.127 24 C 0.404 3.596 25 F -0.167 7.167 26 F -0.168 7.168 27 F -0.169 7.169 28 C -0.060 4.060 29 H 0.053 0.947 30 H 0.191 0.809 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.234 0.766 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.246 0.754 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.121 0.879 43 H 0.103 0.897 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.184 -10.851 -14.208 17.879 hybrid contribution -0.124 -0.681 0.743 1.015 sum -0.309 -11.532 -13.466 17.731 Atomic orbital electron populations 1.70991 1.07291 1.27827 1.56121 1.26996 0.96993 1.04360 1.00821 0.82652 0.73316 0.71953 0.77048 1.19960 1.21047 1.22646 1.20329 0.92301 0.86610 1.46404 0.91102 1.42465 1.04508 1.00985 1.89492 1.20759 0.95004 0.84992 0.93431 0.90535 1.22866 0.86575 0.98539 0.93728 1.86497 1.32864 1.92060 1.27709 1.21354 0.98340 0.96996 0.82842 1.45986 1.50722 1.21829 1.17539 1.20720 0.77492 0.83740 0.87311 1.90650 1.58156 1.24164 1.73272 1.22518 0.99470 1.01631 0.91457 0.86613 1.22700 0.95836 1.03870 0.92517 1.23357 0.94160 0.93986 0.97412 1.63528 1.08398 1.49378 1.04463 1.23582 0.95959 1.05861 0.87284 1.20617 0.74051 0.74245 0.90701 1.93188 1.90962 1.35600 1.96916 1.93186 1.52375 1.94636 1.76559 1.93170 1.59732 1.72090 1.91952 1.22624 0.98685 0.99228 0.85504 0.94676 0.80926 0.91583 0.94758 0.76557 0.90562 0.93177 0.75434 0.88294 0.90708 0.88994 0.91087 0.84594 0.87924 0.89735 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.30 13.70 21.65 0.30 -58.00 16 2 C -0.10 -5.43 5.50 84.86 0.47 -4.96 16 3 Si 1.12 49.00 29.92 68.60 2.05 51.05 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.33 -16.58 9.93 84.03 0.83 -15.74 16 8 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 9 N -0.73 -33.48 4.51 -322.95 -1.46 -34.94 16 10 C 0.17 5.98 2.84 44.99 0.13 6.10 16 11 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 12 C 0.06 2.05 6.86 71.98 0.49 2.55 16 13 O -0.58 -19.77 12.64 -148.98 -1.88 -21.65 16 14 C 0.13 4.33 5.12 86.38 0.44 4.78 16 15 N -0.71 -22.20 5.39 -463.06 -2.49 -24.70 16 16 C 0.52 15.82 7.13 87.66 0.63 16.45 16 17 O -0.58 -21.50 15.42 -3.02 -0.05 -21.55 16 18 C -0.13 -2.86 3.33 -10.36 -0.03 -2.90 16 19 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 20 C -0.11 -2.08 6.51 31.98 0.21 -1.87 16 21 C 0.04 0.64 5.08 86.77 0.44 1.08 16 22 N -0.53 -9.69 5.09 -885.57 -4.50 -14.19 16 23 C 0.00 0.04 4.69 86.30 0.41 0.44 16 24 C 0.46 7.66 3.26 71.98 0.23 7.90 16 25 F -0.19 -3.77 17.24 44.97 0.78 -3.00 16 26 F -0.19 -3.16 17.32 44.97 0.78 -2.38 16 27 F -0.19 -3.41 14.70 44.97 0.66 -2.75 16 28 C 0.07 1.38 6.28 86.64 0.54 1.92 16 29 H 0.24 14.67 6.77 -92.71 -0.63 14.04 16 30 H 0.36 18.16 6.63 -92.71 -0.61 17.55 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.39 9.11 9.12 -74.06 -0.68 8.44 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.05 1.95 7.39 -2.39 -0.02 1.93 16 36 H 0.41 12.80 8.14 -92.71 -0.75 12.05 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16 39 H 0.09 1.57 7.52 -2.39 -0.02 1.55 16 40 H 0.07 1.04 7.36 -2.39 -0.02 1.02 16 41 H 0.14 1.44 8.03 -2.39 -0.02 1.42 16 42 H 0.10 1.06 7.85 -2.39 -0.02 1.04 16 43 H 0.08 2.19 6.81 -2.38 -0.02 2.18 16 44 H 0.08 1.39 7.56 -2.39 -0.02 1.37 16 Total: -1.00 -69.37 371.61 -1.87 -71.24 By element: Atomic # 1 Polarization: 45.97 SS G_CDS: -0.84 Total: 45.13 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 4.79 Total: 15.74 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -8.16 Total: -131.83 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -1.93 Total: -43.20 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 2.21 Total: -8.13 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.05 kcal Total: -69.37 -1.87 -71.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486027513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.639 kcal (2) G-P(sol) polarization free energy of solvation -69.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds