Wall clock time and date at job start Tue Mar 31 2020 22:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47400 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.45480 * 64.99657 * 11 10 9 13 13 C 1.53039 * 109.46027 * 305.02664 * 11 10 9 14 14 C 1.53185 * 109.31146 * 178.59470 * 13 11 10 15 15 N 1.46935 * 108.76493 * 54.66097 * 14 13 11 16 16 C 1.34770 * 120.63384 * 126.35902 * 15 14 13 17 17 O 1.21280 * 120.00031 * 180.02562 * 16 15 14 18 18 C 1.50692 * 120.00111 * 0.02562 * 16 15 14 19 19 C 1.52998 * 109.47305 * 180.02562 * 18 16 15 20 20 H 1.09002 * 110.54434 * 307.84714 * 19 18 16 21 21 C 1.54230 * 110.60907 * 185.00097 * 19 18 16 22 22 C 1.51306 * 103.55739 * 241.48439 * 21 19 18 23 23 O 1.21231 * 125.39763 * 180.02562 * 22 21 19 24 24 N 1.33877 * 109.20873 * 359.97438 * 22 21 19 25 25 C 1.33877 * 114.47337 * 0.02562 * 24 22 21 26 26 O 1.21227 * 125.39804 * 180.02562 * 25 24 22 27 27 C 1.46935 * 118.73265 * 306.38002 * 15 14 13 28 28 C 1.53032 * 109.46218 * 184.96747 * 11 10 9 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 32 32 H 1.09001 * 109.47147 * 60.00061 * 10 9 7 33 33 H 0.96699 * 114.00460 * 300.00372 * 12 11 10 34 34 H 1.08993 * 109.49684 * 298.56510 * 13 11 10 35 35 H 1.09003 * 109.49424 * 58.65820 * 13 11 10 36 36 H 1.08996 * 109.60597 * 294.87066 * 14 13 11 37 37 H 1.09002 * 109.70011 * 174.50415 * 14 13 11 38 38 H 1.09003 * 109.47889 * 300.00344 * 18 16 15 39 39 H 1.09002 * 109.46860 * 60.00372 * 18 16 15 40 40 H 1.08998 * 110.60636 * 0.02562 * 21 19 18 41 41 H 1.09002 * 110.60661 * 122.80635 * 21 19 18 42 42 H 0.96998 * 122.76754 * 179.97438 * 24 22 21 43 43 H 1.09000 * 109.58216 * 293.82187 * 27 15 14 44 44 H 1.08991 * 109.70160 * 173.46523 * 27 15 14 45 45 H 1.09007 * 109.50282 * 301.34249 * 28 11 10 46 46 H 1.09007 * 109.49397 * 61.40431 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0636 -4.8198 0.0118 12 8 0.3163 -4.8144 -1.2062 13 6 0.1078 -4.6662 1.1971 14 6 -0.9078 -5.8128 1.1807 15 7 -0.1798 -7.0888 1.1543 16 6 -0.4326 -8.0428 2.0722 17 8 0.1755 -9.0916 2.0400 18 6 -1.4708 -7.8062 3.1384 19 6 -1.5604 -9.0356 4.0447 20 1 -1.7037 -9.9387 3.4513 21 6 -2.7017 -8.8728 5.0693 22 6 -1.9892 -8.9145 6.4034 23 8 -2.5231 -8.8204 7.4878 24 7 -0.6760 -9.0729 6.1968 25 6 -0.3231 -9.1527 4.9078 26 8 0.8084 -9.2966 4.4972 27 6 0.8295 -7.3048 0.1086 28 6 1.8254 -6.1411 0.1367 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0092 31 1 2.6812 -3.7166 -0.8876 32 1 2.6880 -3.7126 0.8924 33 1 -0.1921 -4.0049 -1.3522 34 1 0.6746 -4.6952 2.1276 35 1 -0.4173 -3.7141 1.1199 36 1 -1.5361 -5.7323 0.2936 37 1 -1.5299 -5.7655 2.0745 38 1 -1.1899 -6.9368 3.7328 39 1 -2.4388 -7.6285 2.6699 40 1 -3.2059 -7.9161 4.9330 41 1 -3.4127 -9.6947 4.9854 42 1 -0.0331 -9.1249 6.9212 43 1 0.3429 -7.3457 -0.8659 44 1 1.3560 -8.2409 0.2937 45 1 2.5230 -6.2391 -0.6952 46 1 2.3764 -6.1558 1.0772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570429554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:25 Heat of formation + Delta-G solvation = -136.767375 kcal Electronic energy + Delta-G solvation = -30305.836767 eV Core-core repulsion = 26002.996302 eV Total energy + Delta-G solvation = -4302.840464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21015 -40.31766 -38.97123 -38.38734 -36.21868 -35.52576 -34.08843 -34.00360 -32.04847 -31.30131 -30.34665 -29.10202 -26.73473 -25.47463 -23.82413 -23.36783 -22.27781 -21.96346 -21.09380 -20.13992 -19.00385 -18.26126 -17.56283 -17.35195 -16.98817 -16.54400 -16.05406 -15.73759 -15.62082 -15.04345 -14.91118 -14.56110 -14.49796 -14.29619 -14.15170 -14.02521 -13.57359 -13.40663 -13.29084 -12.94687 -12.81831 -12.70530 -12.46588 -12.21128 -11.91184 -11.77375 -11.50031 -11.10370 -11.08368 -11.05230 -10.99821 -10.85713 -10.64174 -10.34781 -10.29840 -10.19563 -9.80162 -9.70278 -9.45729 -8.98392 -8.55236 -7.05558 -5.88189 -3.17038 1.15499 2.35516 2.40787 2.58002 2.90644 3.38370 3.43159 3.43816 3.63457 3.77923 3.88288 4.19205 4.44583 4.49681 4.53221 4.69288 4.80766 4.86264 4.98552 5.02914 5.10251 5.13861 5.17608 5.36078 5.39359 5.47345 5.52612 5.61828 5.61931 5.79832 5.85320 5.96169 6.00885 6.10684 6.26285 6.31000 6.35699 6.54979 6.65866 6.67265 6.93999 7.38666 7.52669 7.61114 8.03801 8.13325 8.30944 9.41956 9.95210 10.29669 11.34563 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.002554 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.954690 B =10960.795097 C =11953.253716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.127 3.873 11 C 0.131 3.869 12 O -0.561 6.561 13 C -0.158 4.158 14 C 0.111 3.889 15 N -0.607 5.607 16 C 0.508 3.492 17 O -0.524 6.524 18 C -0.129 4.129 19 C -0.109 4.109 20 H 0.134 0.866 21 C -0.156 4.156 22 C 0.531 3.469 23 O -0.488 6.488 24 N -0.685 5.685 25 C 0.525 3.475 26 O -0.445 6.445 27 C 0.120 3.880 28 C -0.117 4.117 29 H 0.257 0.743 30 H 0.381 0.619 31 H 0.030 0.970 32 H 0.025 0.975 33 H 0.382 0.618 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.414 0.586 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 -18.950 7.177 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.000 4.000 11 C 0.090 3.910 12 O -0.368 6.368 13 C -0.197 4.197 14 C -0.012 4.012 15 N -0.341 5.341 16 C 0.295 3.705 17 O -0.400 6.400 18 C -0.170 4.170 19 C -0.131 4.131 20 H 0.151 0.849 21 C -0.196 4.196 22 C 0.319 3.681 23 O -0.360 6.360 24 N -0.351 5.351 25 C 0.310 3.690 26 O -0.312 6.312 27 C -0.002 4.002 28 C -0.156 4.156 29 H 0.066 0.934 30 H 0.215 0.785 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.231 0.769 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.254 0.746 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.670 -19.999 7.291 22.307 hybrid contribution 0.305 1.811 0.502 1.904 sum -6.365 -18.188 7.794 20.786 Atomic orbital electron populations 1.69615 1.05081 1.25966 1.57676 1.24720 0.95568 0.97716 1.02731 0.86246 0.78552 0.83346 0.77911 1.21203 1.21629 1.21260 1.19165 0.91077 0.84015 1.42977 0.91220 1.42318 1.05535 0.99995 1.89729 1.21334 0.93947 0.86003 0.98760 1.21275 0.91078 0.94860 0.83810 1.86373 1.65513 1.44379 1.40544 1.22539 0.98465 0.98866 0.99800 1.21763 0.94423 0.82461 1.02550 1.48099 1.39885 1.16201 1.29905 1.20321 0.83987 0.84021 0.82202 1.90762 1.50329 1.25730 1.73153 1.21662 1.01084 0.97767 0.96448 1.21848 0.92153 1.02522 0.96574 0.84850 1.22617 0.98724 1.07642 0.90612 1.20758 0.82221 0.73422 0.91716 1.90828 1.70341 1.45940 1.28887 1.44872 1.11459 1.67438 1.11362 1.20689 0.91108 0.74822 0.82363 1.90899 1.22099 1.41965 1.76198 1.21490 0.89508 0.98753 0.90420 1.21849 0.97694 0.93020 1.03018 0.93366 0.78460 0.95262 0.95696 0.76891 0.90875 0.88927 0.90475 0.90236 0.88209 0.86794 0.85698 0.85684 0.74623 0.90710 0.89331 0.90036 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.60 13.06 55.49 0.72 -25.87 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -16.95 5.07 -59.91 -0.30 -17.25 16 10 C 0.13 2.43 5.43 -4.04 -0.02 2.41 16 11 C 0.13 1.97 0.71 -90.58 -0.06 1.90 16 12 O -0.56 -8.62 11.70 -35.23 -0.41 -9.03 16 13 C -0.16 -2.15 4.88 -26.62 -0.13 -2.28 16 14 C 0.11 1.16 6.10 -3.71 -0.02 1.14 16 15 N -0.61 -7.08 2.97 -172.77 -0.51 -7.59 16 16 C 0.51 5.87 7.39 -10.99 -0.08 5.79 16 17 O -0.52 -7.87 13.38 -15.62 -0.21 -8.08 16 18 C -0.13 -0.89 3.36 -27.89 -0.09 -0.98 16 19 C -0.11 -0.70 2.68 -90.83 -0.24 -0.94 16 20 H 0.13 0.83 7.89 -51.93 -0.41 0.42 16 21 C -0.16 -0.62 6.67 -26.94 -0.18 -0.80 16 22 C 0.53 3.92 8.55 -11.09 -0.09 3.82 16 23 O -0.49 -5.30 18.02 5.60 0.10 -5.20 16 24 N -0.68 -5.12 5.48 -11.40 -0.06 -5.18 16 25 C 0.52 4.99 7.72 -11.09 -0.09 4.91 16 26 O -0.44 -6.29 15.91 -15.58 -0.25 -6.53 16 27 C 0.12 1.53 6.19 -3.71 -0.02 1.51 16 28 C -0.12 -1.58 5.11 -26.62 -0.14 -1.72 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.38 8.89 5.55 -40.82 -0.23 8.66 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.38 5.83 8.19 45.56 0.37 6.20 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.42 6.53 -51.93 -0.34 1.08 16 36 H 0.08 0.80 7.81 -51.93 -0.41 0.40 16 37 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 38 H 0.10 0.63 7.67 -51.93 -0.40 0.23 16 39 H 0.11 0.44 7.94 -51.93 -0.41 0.03 16 40 H 0.12 0.28 7.74 -51.93 -0.40 -0.12 16 41 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.41 2.67 8.96 -40.82 -0.37 2.31 16 43 H 0.07 0.96 7.81 -51.93 -0.41 0.55 16 44 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 45 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -35.46 370.77 -7.53 -42.98 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.75 Total: 11.73 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.42 Total: 7.74 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.15 Total: -55.89 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.77 Total: -28.85 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.46 -7.53 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570429554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.783 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds