Wall clock time and date at job start Tue Mar 31 2020 22:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86789 * 120.00450 * 2 1 4 4 H 1.48509 * 109.47070 * 269.99763 * 3 2 1 5 5 H 1.48497 * 109.47231 * 29.99489 * 3 2 1 6 6 H 1.48503 * 109.47373 * 149.99581 * 3 2 1 7 7 C 1.38950 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99888 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00205 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99898 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00476 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99806 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47100 * 179.97438 * 12 10 9 14 14 C 1.47961 * 110.99624 * 169.99715 * 13 12 10 15 15 C 1.53934 * 86.17941 * 222.41721 * 14 13 12 16 16 O 1.42897 * 113.73513 * 269.25858 * 15 14 13 17 17 C 1.53008 * 113.72905 * 138.08090 * 15 14 13 18 18 N 1.46503 * 109.46634 * 185.00103 * 17 15 14 19 19 C 1.34779 * 119.99339 * 180.02562 * 18 17 15 20 20 O 1.21611 * 120.00106 * 359.97438 * 19 18 17 21 21 C 1.47099 * 119.99529 * 179.97438 * 19 18 17 22 22 C 1.32085 * 118.87508 * 179.97438 * 21 19 18 23 23 C 1.50271 * 122.57864 * 180.39167 * 22 21 19 24 24 O 1.42897 * 110.09423 * 344.36006 * 23 22 21 25 25 C 1.43267 * 113.09809 * 50.52628 * 24 23 22 26 26 C 1.50420 * 118.88130 * 0.02562 * 21 19 18 27 27 C 1.47962 * 110.99877 * 70.64334 * 13 12 10 28 28 H 0.97001 * 119.99632 * 0.02562 * 1 2 3 29 29 H 0.96992 * 119.99828 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.46757 * 60.00090 * 12 10 9 31 31 H 1.08998 * 109.46718 * 300.00205 * 12 10 9 32 32 H 1.09003 * 113.75603 * 108.10317 * 14 13 12 33 33 H 1.08997 * 113.76559 * 336.74092 * 14 13 12 34 34 H 0.96701 * 113.99960 * 178.10257 * 16 15 14 35 35 H 1.09001 * 109.46988 * 65.00522 * 17 15 14 36 36 H 1.08992 * 109.47584 * 305.00150 * 17 15 14 37 37 H 0.96995 * 120.00275 * 359.97438 * 18 17 15 38 38 H 1.07997 * 118.71519 * 0.37617 * 22 21 19 39 39 H 1.09006 * 109.37142 * 224.16630 * 23 22 21 40 40 H 1.09001 * 109.26174 * 104.48752 * 23 22 21 41 41 H 1.09004 * 109.63718 * 171.47658 * 25 24 23 42 42 H 1.09001 * 109.64179 * 50.85495 * 25 24 23 43 43 H 1.08994 * 109.45268 * 43.28220 * 26 21 19 44 44 H 1.08998 * 109.44883 * 283.35078 * 26 21 19 45 45 H 1.09008 * 113.76084 * 23.25861 * 27 13 12 46 46 H 1.08998 * 113.75738 * 251.90018 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4002 5 1 1.4457 2.6526 0.6999 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0535 -2.3708 0.0021 11 8 3.4471 -3.4212 0.0021 12 6 5.5606 -2.3709 0.0021 13 7 6.0502 -3.7559 0.0040 14 6 7.5094 -3.8028 -0.2359 15 6 7.2142 -4.9922 -1.1674 16 8 7.2595 -6.2611 -0.5119 17 6 8.0134 -4.9659 -2.4719 18 7 7.5761 -6.0662 -3.3346 19 6 8.1453 -6.2414 -4.5437 20 8 9.0213 -5.4859 -4.9186 21 6 7.7066 -7.3466 -5.4098 22 6 8.2791 -7.4975 -6.5905 23 6 7.8900 -8.5914 -7.5445 24 8 7.1326 -9.5922 -6.8614 25 6 6.0447 -9.0526 -6.1013 26 6 6.6207 -8.2656 -4.9211 27 6 5.7952 -4.4102 -1.2984 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3636 0.0007 30 1 5.9239 -1.8563 0.8917 31 1 5.9239 -1.8579 -0.8883 32 1 8.0911 -4.0698 0.6464 33 1 7.8979 -2.9256 -0.7533 34 1 7.0461 -7.0087 -1.0870 35 1 9.0747 -5.0779 -2.2500 36 1 7.8468 -4.0167 -2.9810 37 1 6.8777 -6.6691 -3.0354 38 1 9.0572 -6.8075 -6.8819 39 1 8.7895 -9.0422 -7.9640 40 1 7.2883 -8.1693 -8.3495 41 1 5.4191 -9.8643 -5.7300 42 1 5.4525 -8.3878 -6.7302 43 1 5.8296 -7.6776 -4.4559 44 1 7.0346 -8.9597 -4.1897 45 1 5.6821 -3.7106 -2.1267 46 1 5.0071 -5.1625 -1.2651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724445457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:07 Heat of formation + Delta-G solvation = -96.020328 kcal Electronic energy + Delta-G solvation = -29272.662107 eV Core-core repulsion = 24971.588568 eV Total energy + Delta-G solvation = -4301.073540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99043 -40.30138 -39.05359 -38.13972 -35.98091 -34.69467 -34.16011 -33.96834 -31.73729 -31.61525 -30.47213 -28.04186 -26.37602 -26.22795 -24.92419 -24.16836 -22.62017 -21.61744 -20.12921 -19.49796 -19.20254 -18.34190 -18.13700 -17.08108 -16.74981 -16.33731 -16.19100 -15.84954 -15.61588 -15.47368 -15.39759 -15.11501 -14.81099 -14.35022 -14.16245 -14.01509 -13.67297 -13.42526 -13.22492 -13.12972 -13.08669 -12.90349 -12.50984 -12.33237 -12.17979 -12.06035 -11.83281 -11.45459 -11.33650 -11.17014 -10.88896 -10.62780 -10.60213 -10.07220 -10.01656 -9.99681 -9.67717 -9.60129 -9.45303 -8.80771 -8.40380 -8.21417 -6.34515 -3.86070 0.87184 2.67370 2.84145 2.99932 3.03624 3.12432 3.36139 3.56739 3.68981 3.88135 4.05417 4.07091 4.15861 4.22457 4.32836 4.43267 4.56943 4.68910 4.73271 4.85782 4.95086 5.01541 5.07435 5.14870 5.16123 5.21365 5.32382 5.37580 5.38177 5.48051 5.52627 5.61627 5.71386 5.76514 5.87714 5.91693 5.97512 6.02325 6.43030 6.54709 6.96480 7.02943 7.33427 7.54134 7.78956 8.09951 8.56017 8.91229 9.38484 9.78602 10.78548 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002227 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.978817 B =12567.810290 C =13309.869807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.452 3.548 11 O -0.560 6.560 12 C 0.004 3.996 13 N -0.439 5.439 14 C 0.018 3.982 15 C 0.087 3.913 16 O -0.520 6.520 17 C 0.101 3.899 18 N -0.724 5.724 19 C 0.555 3.445 20 O -0.540 6.540 21 C -0.169 4.169 22 C -0.110 4.110 23 C 0.083 3.917 24 O -0.377 6.377 25 C 0.059 3.941 26 C -0.123 4.123 27 C -0.002 4.002 28 H 0.274 0.726 29 H 0.370 0.630 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.371 0.629 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.458 -13.850 -12.280 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.238 3.762 11 O -0.442 6.442 12 C -0.128 4.128 13 N -0.162 5.162 14 C -0.111 4.111 15 C 0.045 3.955 16 O -0.325 6.325 17 C -0.024 4.024 18 N -0.377 5.377 19 C 0.343 3.657 20 O -0.418 6.418 21 C -0.172 4.172 22 C -0.129 4.129 23 C 0.007 3.993 24 O -0.295 6.295 25 C -0.018 4.018 26 C -0.160 4.160 27 C -0.131 4.131 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.219 0.781 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.235 0.765 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.363 -13.962 -11.391 25.727 hybrid contribution 0.280 1.822 -0.882 2.044 sum 18.642 -12.140 -12.273 25.407 Atomic orbital electron populations 1.69621 1.05633 1.27526 1.49273 1.25041 0.95508 0.97994 0.97632 0.86673 0.79831 0.84042 0.78857 1.19661 1.20104 1.19473 1.19419 0.79181 0.96620 1.48137 0.86297 1.42215 1.07570 1.06113 1.67128 1.19544 0.87849 0.84636 0.84186 1.90562 1.69287 1.30857 1.53486 1.22560 0.96330 0.91789 1.02156 1.68486 1.04014 1.13368 1.30304 1.24129 0.93019 0.94718 0.99270 1.23046 0.95476 0.86211 0.90773 1.86641 1.92384 1.14259 1.39168 1.22062 0.99800 0.90836 0.89680 1.45801 1.41364 1.32746 1.17749 1.18394 0.81526 0.84541 0.81196 1.90801 1.31139 1.46330 1.73574 1.20834 1.01573 0.98196 0.96632 1.23755 0.97250 0.97690 0.94238 1.21627 0.96724 0.88023 0.92917 1.88152 1.44015 1.31979 1.65354 1.22675 0.88743 0.98597 0.91751 1.21116 0.96988 0.97968 0.99929 1.24556 0.96870 0.99644 0.92057 0.91585 0.79715 0.88742 0.92617 0.87982 0.89849 0.78129 0.90133 0.89999 0.76460 0.84600 0.86849 0.90652 0.87711 0.92223 0.89344 0.89137 0.90741 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 10 C 0.45 10.20 7.59 -10.98 -0.08 10.12 16 11 O -0.56 -14.88 15.12 5.55 0.08 -14.80 16 12 C 0.00 0.06 5.30 -4.97 -0.03 0.04 16 13 N -0.44 -6.92 5.95 -239.64 -1.43 -8.34 16 14 C 0.02 0.21 7.38 -2.77 -0.02 0.19 16 15 C 0.09 0.94 1.52 -89.69 -0.14 0.81 16 16 O -0.52 -5.76 13.50 -35.23 -0.48 -6.24 16 17 C 0.10 0.96 5.28 -4.04 -0.02 0.94 16 18 N -0.72 -6.21 5.28 -61.49 -0.32 -6.53 16 19 C 0.56 5.86 7.73 -12.66 -0.10 5.76 16 20 O -0.54 -7.63 16.06 5.27 0.08 -7.55 16 21 C -0.17 -1.41 5.86 -103.09 -0.60 -2.01 16 22 C -0.11 -0.84 9.58 -36.44 -0.35 -1.19 16 23 C 0.08 0.49 7.04 35.80 0.25 0.74 16 24 O -0.38 -2.90 10.83 -35.23 -0.38 -3.28 16 25 C 0.06 0.35 6.88 37.21 0.26 0.60 16 26 C -0.12 -0.73 5.29 -27.97 -0.15 -0.87 16 27 C 0.00 -0.03 6.15 -2.77 -0.02 -0.05 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 34 H 0.37 2.64 7.61 45.56 0.35 2.99 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 37 H 0.40 2.52 5.61 -40.82 -0.23 2.29 16 38 H 0.14 1.11 7.29 -52.49 -0.38 0.73 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 43 H 0.09 0.42 7.31 -51.93 -0.38 0.04 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.02 7.67 -51.92 -0.40 0.62 16 46 H 0.10 1.58 8.09 -51.93 -0.42 1.16 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -37.34 379.13 -7.82 -45.16 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -5.85 Total: 12.83 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.24 Total: 7.37 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -1.03 Total: -53.75 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.69 Total: -31.86 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.34 -7.82 -45.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724445457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.862 kcal (2) G-P(sol) polarization free energy of solvation -37.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds