Wall clock time and date at job start Tue Mar 31 2020 22:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86789 * 120.00450 * 2 1 4 4 H 1.48509 * 109.47070 * 269.99763 * 3 2 1 5 5 H 1.48497 * 109.47231 * 29.99489 * 3 2 1 6 6 H 1.48503 * 109.47373 * 149.99581 * 3 2 1 7 7 C 1.38950 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99888 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00205 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99898 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00476 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99806 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47100 * 179.97438 * 12 10 9 14 14 C 1.47961 * 110.99624 * 169.99715 * 13 12 10 15 15 C 1.53934 * 86.17941 * 222.41721 * 14 13 12 16 16 O 1.42897 * 113.73513 * 269.25858 * 15 14 13 17 17 C 1.53008 * 113.72905 * 138.08090 * 15 14 13 18 18 N 1.46503 * 109.46634 * 185.00103 * 17 15 14 19 19 C 1.34779 * 119.99339 * 180.02562 * 18 17 15 20 20 O 1.21611 * 120.00106 * 359.97438 * 19 18 17 21 21 C 1.47099 * 119.99529 * 179.97438 * 19 18 17 22 22 C 1.32085 * 118.87508 * 179.97438 * 21 19 18 23 23 C 1.50271 * 122.57864 * 180.39167 * 22 21 19 24 24 O 1.42897 * 110.09423 * 344.36006 * 23 22 21 25 25 C 1.43267 * 113.09809 * 50.52628 * 24 23 22 26 26 C 1.50420 * 118.88130 * 0.02562 * 21 19 18 27 27 C 1.47962 * 110.99877 * 70.64334 * 13 12 10 28 28 H 0.97001 * 119.99632 * 0.02562 * 1 2 3 29 29 H 0.96992 * 119.99828 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.46757 * 60.00090 * 12 10 9 31 31 H 1.08998 * 109.46718 * 300.00205 * 12 10 9 32 32 H 1.09003 * 113.75603 * 108.10317 * 14 13 12 33 33 H 1.08997 * 113.76559 * 336.74092 * 14 13 12 34 34 H 0.96701 * 113.99960 * 178.10257 * 16 15 14 35 35 H 1.09001 * 109.46988 * 65.00522 * 17 15 14 36 36 H 1.08992 * 109.47584 * 305.00150 * 17 15 14 37 37 H 0.96995 * 120.00275 * 359.97438 * 18 17 15 38 38 H 1.07997 * 118.71519 * 0.37617 * 22 21 19 39 39 H 1.09006 * 109.37142 * 224.16630 * 23 22 21 40 40 H 1.09001 * 109.26174 * 104.48752 * 23 22 21 41 41 H 1.09004 * 109.63718 * 171.47658 * 25 24 23 42 42 H 1.09001 * 109.64179 * 50.85495 * 25 24 23 43 43 H 1.08994 * 109.45268 * 43.28220 * 26 21 19 44 44 H 1.08998 * 109.44883 * 283.35078 * 26 21 19 45 45 H 1.09008 * 113.76084 * 23.25861 * 27 13 12 46 46 H 1.08998 * 113.75738 * 251.90018 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4002 5 1 1.4457 2.6526 0.6999 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0535 -2.3708 0.0021 11 8 3.4471 -3.4212 0.0021 12 6 5.5606 -2.3709 0.0021 13 7 6.0502 -3.7559 0.0040 14 6 7.5094 -3.8028 -0.2359 15 6 7.2142 -4.9922 -1.1674 16 8 7.2595 -6.2611 -0.5119 17 6 8.0134 -4.9659 -2.4719 18 7 7.5761 -6.0662 -3.3346 19 6 8.1453 -6.2414 -4.5437 20 8 9.0213 -5.4859 -4.9186 21 6 7.7066 -7.3466 -5.4098 22 6 8.2791 -7.4975 -6.5905 23 6 7.8900 -8.5914 -7.5445 24 8 7.1326 -9.5922 -6.8614 25 6 6.0447 -9.0526 -6.1013 26 6 6.6207 -8.2656 -4.9211 27 6 5.7952 -4.4102 -1.2984 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3636 0.0007 30 1 5.9239 -1.8563 0.8917 31 1 5.9239 -1.8579 -0.8883 32 1 8.0911 -4.0698 0.6464 33 1 7.8979 -2.9256 -0.7533 34 1 7.0461 -7.0087 -1.0870 35 1 9.0747 -5.0779 -2.2500 36 1 7.8468 -4.0167 -2.9810 37 1 6.8777 -6.6691 -3.0354 38 1 9.0572 -6.8075 -6.8819 39 1 8.7895 -9.0422 -7.9640 40 1 7.2883 -8.1693 -8.3495 41 1 5.4191 -9.8643 -5.7300 42 1 5.4525 -8.3878 -6.7302 43 1 5.8296 -7.6776 -4.4559 44 1 7.0346 -8.9597 -4.1897 45 1 5.6821 -3.7106 -2.1267 46 1 5.0071 -5.1625 -1.2651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724445457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:06 Heat of formation + Delta-G solvation = -131.311211 kcal Electronic energy + Delta-G solvation = -29274.192435 eV Core-core repulsion = 24971.588568 eV Total energy + Delta-G solvation = -4302.603867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92003 -41.13204 -39.98509 -39.58522 -37.01191 -35.95812 -35.51493 -34.75897 -33.78238 -32.13914 -31.59629 -29.09029 -27.29147 -27.20329 -26.39696 -24.78196 -23.78347 -22.38451 -21.29050 -21.04827 -20.33137 -19.84841 -18.75395 -17.93866 -17.80353 -17.35742 -17.03483 -16.92875 -16.76226 -16.55632 -16.47007 -15.98541 -15.85633 -15.54445 -15.25475 -14.93645 -14.71317 -14.61133 -14.41828 -14.35982 -14.15210 -13.72533 -13.61188 -13.46283 -13.37708 -13.02242 -12.97051 -12.55800 -12.48727 -12.43358 -11.99724 -11.95231 -11.78978 -11.52666 -11.28272 -10.99704 -10.63033 -10.44904 -10.40413 -10.26836 -10.09064 -9.70925 -8.43128 -6.04064 0.21940 1.28846 1.33577 1.42985 1.92765 1.94700 2.09294 2.21228 2.57513 2.81386 2.91103 3.12859 3.18327 3.21408 3.48443 3.58122 3.66737 3.84159 3.95324 4.09171 4.23851 4.25430 4.28469 4.35291 4.41032 4.43887 4.48918 4.51501 4.58615 4.64266 4.68109 4.76593 4.80173 4.94315 4.94590 5.13552 5.25289 5.34316 5.40482 5.51199 5.85874 5.96450 6.08539 6.31464 6.57217 6.63301 6.85948 7.02716 7.37156 7.93864 8.74449 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002227 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.978817 B =12567.810290 C =13309.869807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.327 4.327 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.609 6.609 12 C 0.015 3.985 13 N -0.477 5.477 14 C 0.024 3.976 15 C 0.110 3.890 16 O -0.535 6.535 17 C 0.109 3.891 18 N -0.714 5.714 19 C 0.552 3.448 20 O -0.582 6.582 21 C -0.184 4.184 22 C -0.106 4.106 23 C 0.082 3.918 24 O -0.394 6.394 25 C 0.055 3.945 26 C -0.119 4.119 27 C -0.008 4.008 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.387 0.613 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.411 0.589 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.323 -12.678 -12.693 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.155 1.155 7 C -0.457 4.457 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.238 3.762 11 O -0.493 6.493 12 C -0.116 4.116 13 N -0.200 5.200 14 C -0.105 4.105 15 C 0.067 3.933 16 O -0.342 6.342 17 C -0.015 4.015 18 N -0.367 5.367 19 C 0.342 3.658 20 O -0.463 6.463 21 C -0.187 4.187 22 C -0.126 4.126 23 C 0.007 3.993 24 O -0.313 6.313 25 C -0.022 4.022 26 C -0.156 4.156 27 C -0.137 4.137 28 H 0.089 0.911 29 H 0.225 0.775 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.237 0.763 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.248 0.752 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.095 0.905 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.236 -12.828 -11.790 27.469 hybrid contribution -0.673 1.288 -0.760 1.640 sum 20.563 -11.540 -12.551 26.712 Atomic orbital electron populations 1.69804 1.08117 1.29251 1.50267 1.26118 0.96488 1.02719 0.96099 0.85373 0.79513 0.76753 0.79950 1.18086 1.20040 1.15479 1.18985 0.81444 0.94883 1.50350 0.92702 1.42049 1.05857 1.07569 1.67893 1.20826 0.90696 0.83382 0.81273 1.90542 1.71269 1.32683 1.54777 1.22520 0.90778 0.93299 1.05021 1.68459 1.06986 1.13026 1.31494 1.24262 0.90349 0.95931 0.99939 1.22762 0.93220 0.86148 0.91131 1.86608 1.92262 1.14969 1.40330 1.21941 0.99598 0.91067 0.88942 1.45724 1.41203 1.32566 1.17176 1.18765 0.80925 0.84576 0.81561 1.90774 1.33073 1.47966 1.74507 1.20927 1.02783 0.98290 0.96705 1.23929 0.96492 0.97768 0.94385 1.21797 0.97563 0.87401 0.92574 1.88129 1.44553 1.32877 1.65736 1.22822 0.88537 0.99173 0.91638 1.21149 0.96525 0.97767 1.00208 1.24538 0.98084 0.99439 0.91656 0.91135 0.77507 0.86198 0.89011 0.87423 0.86784 0.76298 0.89806 0.90073 0.75152 0.85477 0.85160 0.89149 0.86290 0.91915 0.88377 0.88338 0.90496 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.96 21.66 0.30 -55.86 16 2 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 3 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 7 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.76 5.09 -306.97 -1.56 -29.32 16 10 C 0.45 20.24 7.59 87.66 0.67 20.90 16 11 O -0.61 -33.58 15.12 -3.06 -0.05 -33.63 16 12 C 0.02 0.46 5.30 85.56 0.45 0.91 16 13 N -0.48 -14.12 5.95 -915.30 -5.44 -19.57 16 14 C 0.02 0.47 7.38 86.41 0.64 1.10 16 15 C 0.11 2.16 1.52 -10.15 -0.02 2.14 16 16 O -0.53 -10.96 13.50 -148.98 -2.01 -12.98 16 17 C 0.11 1.86 5.28 86.38 0.46 2.32 16 18 N -0.71 -11.32 5.28 -466.70 -2.47 -13.79 16 19 C 0.55 11.24 7.73 86.57 0.67 11.91 16 20 O -0.58 -16.24 16.06 -4.07 -0.07 -16.31 16 21 C -0.18 -2.91 5.86 -18.58 -0.11 -3.02 16 22 C -0.11 -1.55 9.58 24.59 0.24 -1.32 16 23 C 0.08 0.86 7.04 71.10 0.50 1.36 16 24 O -0.39 -5.50 10.83 -148.98 -1.61 -7.11 16 25 C 0.05 0.56 6.88 72.02 0.50 1.06 16 26 C -0.12 -1.25 5.29 29.79 0.16 -1.10 16 27 C -0.01 -0.21 6.15 86.40 0.53 0.32 16 28 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.39 15.04 5.76 -92.71 -0.53 14.51 16 30 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.09 2.13 7.69 -2.39 -0.02 2.11 16 32 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 1.57 7.75 -2.39 -0.02 1.56 16 34 H 0.39 4.93 7.61 -74.06 -0.56 4.36 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 37 H 0.41 4.64 5.61 -92.71 -0.52 4.11 16 38 H 0.13 2.07 7.29 -2.91 -0.02 2.05 16 39 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 0.60 8.09 -2.39 -0.02 0.58 16 43 H 0.10 0.81 7.31 -2.39 -0.02 0.79 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 45 H 0.08 2.01 7.67 -2.38 -0.02 1.99 16 46 H 0.07 2.36 8.09 -2.39 -0.02 2.34 16 Total: -1.00 -87.03 379.13 -5.64 -92.67 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -0.64 Total: 37.55 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 6.00 Total: 17.93 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -9.17 Total: -118.54 kcal Atomic # 8 Polarization: -66.29 SS G_CDS: -3.74 Total: -70.03 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -87.03 -5.64 -92.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724445457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.646 kcal (2) G-P(sol) polarization free energy of solvation -87.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds