Wall clock time and date at job start Tue Mar 31 2020 22:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35271 * 126.70701 * 2 1 4 4 C 1.41929 * 103.96268 * 180.02562 * 3 2 1 5 5 O 1.35704 * 126.88372 * 179.97438 * 4 3 2 6 6 C 1.42905 * 117.00022 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46972 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.62856 * 359.71632 * 9 7 6 11 11 C 1.52761 * 109.00629 * 233.58929 * 10 9 7 12 12 C 1.53045 * 109.38221 * 305.58631 * 11 10 9 13 13 O 1.42902 * 109.44788 * 301.23140 * 12 11 10 14 14 C 1.53001 * 109.45677 * 181.26419 * 12 11 10 15 15 N 1.46499 * 109.47043 * 59.93624 * 14 12 11 16 16 C 1.36938 * 119.99776 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99762 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99798 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47523 * 89.99817 * 20 18 16 22 22 H 1.48504 * 109.47017 * 209.99983 * 20 18 16 23 23 H 1.48500 * 109.47019 * 329.99359 * 20 18 16 24 24 C 1.53036 * 109.53562 * 61.24591 * 12 11 10 25 25 C 1.46924 * 120.63200 * 179.97438 * 9 7 6 26 26 N 1.30623 * 106.23858 * 0.24439 * 4 3 2 27 27 O 1.20917 * 111.49887 * 359.57004 * 26 4 3 28 28 H 1.09001 * 109.47359 * 89.99699 * 1 2 3 29 29 H 1.08999 * 109.47145 * 210.00140 * 1 2 3 30 30 H 1.09007 * 109.47022 * 329.99694 * 1 2 3 31 31 H 1.08005 * 128.02246 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47187 * 300.00276 * 6 5 4 33 33 H 1.09001 * 109.46558 * 60.00324 * 6 5 4 34 34 H 1.09002 * 109.58533 * 353.42389 * 10 9 7 35 35 H 1.08996 * 109.58066 * 113.84691 * 10 9 7 36 36 H 1.09002 * 109.56255 * 185.55684 * 11 10 9 37 37 H 1.08991 * 109.36323 * 65.49887 * 11 10 9 38 38 H 0.96698 * 113.99708 * 300.05674 * 13 12 11 39 39 H 1.09006 * 109.46514 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47119 * 299.93135 * 14 12 11 41 41 H 0.96991 * 120.00528 * 359.97438 * 15 14 12 42 42 H 0.96998 * 119.99804 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.49785 * 178.68778 * 24 12 11 44 44 H 1.09000 * 109.50258 * 58.58362 * 24 12 11 45 45 H 1.08990 * 109.58875 * 246.15416 * 25 9 7 46 46 H 1.09007 * 109.58456 * 6.58164 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6245 0.5357 -0.0006 5 8 4.7953 1.2219 -0.0013 6 6 5.9988 0.4514 -0.0013 7 6 7.1879 1.3771 -0.0015 8 8 7.0212 2.5784 -0.0012 9 7 8.4367 0.8701 -0.0020 10 6 8.6547 -0.5829 0.0039 11 6 9.5789 -0.9426 1.1658 12 6 10.8623 -0.1145 1.0691 13 8 11.5038 -0.3754 -0.1809 14 6 11.8025 -0.4961 2.2142 15 7 12.1309 -1.9209 2.1222 16 6 12.9638 -2.4926 3.0467 17 1 13.3789 -1.8930 3.8433 18 6 13.2745 -3.8427 2.9599 19 7 12.7682 -4.5734 1.9893 20 14 14.4101 -4.6227 4.2214 21 1 13.6071 -5.1352 5.3605 22 1 15.1509 -5.7459 3.5930 23 1 15.3753 -3.6071 4.7134 24 6 10.5194 1.3739 1.1654 25 6 9.6059 1.7599 -0.0028 26 7 3.4765 -0.7621 -0.0063 27 8 2.3085 -1.0749 -0.0006 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 2.0311 2.1264 0.0004 32 1 6.0280 -0.1768 0.8890 33 1 6.0274 -0.1777 -0.8910 34 1 7.7002 -1.0950 0.1258 35 1 9.1174 -0.8866 -0.9351 36 1 9.8261 -2.0032 1.1206 37 1 9.0760 -0.7255 2.1081 38 1 11.7502 -1.3014 -0.3107 39 1 12.7169 0.0933 2.1452 40 1 11.3135 -0.2967 3.1677 41 1 11.7584 -2.4592 1.4066 42 1 12.9856 -5.5168 1.9285 43 1 11.4360 1.9620 1.1199 44 1 10.0076 1.5692 2.1077 45 1 10.1476 1.6506 -0.9422 46 1 9.2789 2.7931 0.1148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724981719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:25 Heat of formation + Delta-G solvation = -36.559761 kcal Electronic energy + Delta-G solvation = -29512.243582 eV Core-core repulsion = 25213.748446 eV Total energy + Delta-G solvation = -4298.495136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.20379 -40.61938 -39.23795 -38.17892 -35.62125 -34.20354 -34.05515 -32.89242 -32.17528 -31.41489 -30.44338 -28.98930 -28.12753 -26.51860 -23.92980 -23.73930 -23.42953 -22.23661 -21.45038 -20.31800 -19.16301 -18.32885 -18.16576 -17.57475 -17.21044 -16.96069 -16.53800 -16.04225 -15.74311 -15.04327 -14.86426 -14.56489 -14.43906 -14.24698 -14.17354 -13.88375 -13.73521 -13.54132 -13.32114 -13.21255 -12.89972 -12.84177 -12.64887 -12.40999 -12.02166 -11.95338 -11.61232 -11.41953 -11.16503 -11.11365 -11.06066 -10.87856 -10.35653 -10.19184 -9.95411 -9.87196 -9.73255 -9.51407 -9.49136 -8.98796 -8.69733 -7.05645 -5.87848 -3.17010 1.07632 1.95440 2.02582 2.35811 2.74372 3.10758 3.37978 3.43817 3.45019 3.85932 4.15028 4.40459 4.47069 4.50979 4.57681 4.70225 4.72435 4.77772 4.84451 4.91489 4.94020 5.04869 5.11117 5.16643 5.28828 5.32527 5.44050 5.47410 5.54346 5.56125 5.72881 5.80405 5.90604 5.96782 6.04742 6.23839 6.30393 6.45123 6.61711 6.64100 6.66998 7.19685 7.61439 7.89981 7.95359 8.02237 8.31146 9.41909 9.94943 10.29086 11.34893 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.002229 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.687623 B =12559.643024 C =13998.355848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.257 6.257 6 C 0.046 3.954 7 C 0.519 3.481 8 O -0.526 6.526 9 N -0.600 5.600 10 C 0.107 3.893 11 C -0.158 4.158 12 C 0.130 3.870 13 O -0.560 6.560 14 C 0.129 3.871 15 N -0.729 5.729 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.934 5.934 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.117 4.117 25 C 0.120 3.880 26 N -0.409 5.409 27 O 0.100 5.900 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.383 0.617 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.380 0.620 42 H 0.256 0.744 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.705 10.279 -6.381 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.162 6.162 6 C -0.032 4.032 7 C 0.306 3.694 8 O -0.402 6.402 9 N -0.335 5.335 10 C -0.015 4.015 11 C -0.197 4.197 12 C 0.089 3.911 13 O -0.368 6.368 14 C 0.001 3.999 15 N -0.375 5.375 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.156 4.156 25 C -0.001 4.001 26 N -0.137 5.137 27 O 0.039 5.961 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.196 0.804 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.233 0.767 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.214 0.786 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.846 10.829 -6.332 25.192 hybrid contribution 0.562 -0.888 0.680 1.252 sum -21.284 9.941 -5.652 24.162 Atomic orbital electron populations 1.20388 0.83461 1.04986 1.04416 1.24365 0.96520 0.85585 1.00816 1.21796 0.88253 1.01712 1.13732 1.22054 0.88408 0.88070 1.00008 1.86265 1.10019 1.30854 1.89094 1.22557 0.82236 0.93632 1.04815 1.19823 0.83659 0.88703 0.77247 1.90729 1.85197 1.15086 1.49191 1.48030 1.04903 1.07963 1.72615 1.21768 1.00269 0.78929 1.00578 1.22486 0.96427 1.02456 0.98316 1.21288 0.90872 0.93914 0.85074 1.86371 1.80294 1.33395 1.36724 1.21312 0.95815 0.87791 0.95005 1.42274 1.57539 1.03628 1.34054 1.19198 1.20340 0.92333 1.05339 0.91128 1.24734 1.00894 0.96448 0.98719 1.69625 1.48408 1.06897 1.33305 0.86163 0.80317 0.78902 0.80636 1.21681 1.21702 1.20741 1.21873 1.00035 0.94920 0.98745 1.21595 0.84755 0.94260 0.99515 1.74194 0.97937 1.14167 1.27375 1.84805 1.10278 1.31965 1.69011 0.89054 0.89457 0.88759 0.80390 0.88403 0.88515 0.90272 0.90002 0.88693 0.90741 0.76726 0.95264 0.95650 0.78551 0.93391 0.89692 0.90370 0.90206 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.45 36.00 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.37 -0.26 -0.33 16 3 C -0.23 -2.09 11.10 -39.23 -0.44 -2.53 16 4 C 0.21 2.59 8.01 -16.65 -0.13 2.46 16 5 O -0.26 -3.54 9.74 -38.73 -0.38 -3.91 16 6 C 0.05 0.56 4.49 36.01 0.16 0.72 16 7 C 0.52 7.33 7.78 -10.99 -0.09 7.25 16 8 O -0.53 -9.19 15.91 -14.35 -0.23 -9.41 16 9 N -0.60 -7.76 2.98 -173.00 -0.52 -8.28 16 10 C 0.11 1.27 6.08 -3.93 -0.02 1.24 16 11 C -0.16 -2.23 4.91 -26.83 -0.13 -2.36 16 12 C 0.13 1.98 0.71 -90.58 -0.06 1.92 16 13 O -0.56 -8.88 11.70 -35.23 -0.41 -9.29 16 14 C 0.13 2.46 5.40 -4.04 -0.02 2.44 16 15 N -0.73 -17.07 5.07 -59.91 -0.30 -17.37 16 16 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -26.89 13.06 55.49 0.72 -26.17 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.12 -1.57 5.11 -26.59 -0.14 -1.70 16 25 C 0.12 1.57 6.20 -3.69 -0.02 1.54 16 26 N -0.41 -5.02 11.54 30.38 0.35 -4.67 16 27 O 0.10 1.02 11.19 17.06 0.19 1.21 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.10 1.08 7.68 -51.93 -0.40 0.68 16 33 H 0.10 1.02 7.95 -51.93 -0.41 0.61 16 34 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 35 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 36 H 0.09 1.50 6.82 -51.93 -0.35 1.14 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.38 6.09 7.85 45.56 0.36 6.45 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.38 9.00 5.58 -40.82 -0.23 8.77 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.05 7.81 -51.93 -0.41 0.64 16 46 H 0.09 1.20 7.01 -51.92 -0.36 0.84 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -33.73 379.03 -6.78 -40.51 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.87 Total: 11.04 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.03 Total: 3.75 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.26 Total: -56.48 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.83 Total: -21.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.73 -6.78 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724981719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.950 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds