Wall clock time and date at job start Tue Mar 31 2020 22:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35271 * 126.70701 * 2 1 4 4 C 1.41929 * 103.96268 * 180.02562 * 3 2 1 5 5 O 1.35704 * 126.88372 * 179.97438 * 4 3 2 6 6 C 1.42905 * 117.00022 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46972 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.62856 * 359.71632 * 9 7 6 11 11 C 1.52761 * 109.00629 * 233.58929 * 10 9 7 12 12 C 1.53045 * 109.38221 * 305.58631 * 11 10 9 13 13 O 1.42902 * 109.44788 * 301.23140 * 12 11 10 14 14 C 1.53001 * 109.45677 * 181.26419 * 12 11 10 15 15 N 1.46499 * 109.47043 * 59.93624 * 14 12 11 16 16 C 1.36938 * 119.99776 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99762 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99798 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47523 * 89.99817 * 20 18 16 22 22 H 1.48504 * 109.47017 * 209.99983 * 20 18 16 23 23 H 1.48500 * 109.47019 * 329.99359 * 20 18 16 24 24 C 1.53036 * 109.53562 * 61.24591 * 12 11 10 25 25 C 1.46924 * 120.63200 * 179.97438 * 9 7 6 26 26 N 1.30623 * 106.23858 * 0.24439 * 4 3 2 27 27 O 1.20917 * 111.49887 * 359.57004 * 26 4 3 28 28 H 1.09001 * 109.47359 * 89.99699 * 1 2 3 29 29 H 1.08999 * 109.47145 * 210.00140 * 1 2 3 30 30 H 1.09007 * 109.47022 * 329.99694 * 1 2 3 31 31 H 1.08005 * 128.02246 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47187 * 300.00276 * 6 5 4 33 33 H 1.09001 * 109.46558 * 60.00324 * 6 5 4 34 34 H 1.09002 * 109.58533 * 353.42389 * 10 9 7 35 35 H 1.08996 * 109.58066 * 113.84691 * 10 9 7 36 36 H 1.09002 * 109.56255 * 185.55684 * 11 10 9 37 37 H 1.08991 * 109.36323 * 65.49887 * 11 10 9 38 38 H 0.96698 * 113.99708 * 300.05674 * 13 12 11 39 39 H 1.09006 * 109.46514 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47119 * 299.93135 * 14 12 11 41 41 H 0.96991 * 120.00528 * 359.97438 * 15 14 12 42 42 H 0.96998 * 119.99804 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.49785 * 178.68778 * 24 12 11 44 44 H 1.09000 * 109.50258 * 58.58362 * 24 12 11 45 45 H 1.08990 * 109.58875 * 246.15416 * 25 9 7 46 46 H 1.09007 * 109.58456 * 6.58164 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6245 0.5357 -0.0006 5 8 4.7953 1.2219 -0.0013 6 6 5.9988 0.4514 -0.0013 7 6 7.1879 1.3771 -0.0015 8 8 7.0212 2.5784 -0.0012 9 7 8.4367 0.8701 -0.0020 10 6 8.6547 -0.5829 0.0039 11 6 9.5789 -0.9426 1.1658 12 6 10.8623 -0.1145 1.0691 13 8 11.5038 -0.3754 -0.1809 14 6 11.8025 -0.4961 2.2142 15 7 12.1309 -1.9209 2.1222 16 6 12.9638 -2.4926 3.0467 17 1 13.3789 -1.8930 3.8433 18 6 13.2745 -3.8427 2.9599 19 7 12.7682 -4.5734 1.9893 20 14 14.4101 -4.6227 4.2214 21 1 13.6071 -5.1352 5.3605 22 1 15.1509 -5.7459 3.5930 23 1 15.3753 -3.6071 4.7134 24 6 10.5194 1.3739 1.1654 25 6 9.6059 1.7599 -0.0028 26 7 3.4765 -0.7621 -0.0063 27 8 2.3085 -1.0749 -0.0006 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 2.0311 2.1264 0.0004 32 1 6.0280 -0.1768 0.8890 33 1 6.0274 -0.1777 -0.8910 34 1 7.7002 -1.0950 0.1258 35 1 9.1174 -0.8866 -0.9351 36 1 9.8261 -2.0032 1.1206 37 1 9.0760 -0.7255 2.1081 38 1 11.7502 -1.3014 -0.3107 39 1 12.7169 0.0933 2.1452 40 1 11.3135 -0.2967 3.1677 41 1 11.7584 -2.4592 1.4066 42 1 12.9856 -5.5168 1.9285 43 1 11.4360 1.9620 1.1199 44 1 10.0076 1.5692 2.1077 45 1 10.1476 1.6506 -0.9422 46 1 9.2789 2.7931 0.1148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724981719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:24 Heat of formation + Delta-G solvation = -61.815029 kcal Electronic energy + Delta-G solvation = -29513.338733 eV Core-core repulsion = 25213.748446 eV Total energy + Delta-G solvation = -4299.590286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.96589 -41.72786 -40.31740 -39.32291 -36.92512 -35.79748 -34.79861 -33.70010 -33.50313 -32.79096 -31.92406 -30.02028 -28.66674 -27.98459 -25.58395 -24.59674 -24.47279 -23.57978 -22.43972 -21.49568 -20.26148 -19.48737 -19.13155 -18.95940 -18.09647 -17.91088 -17.59055 -17.16113 -16.99816 -16.74377 -15.97765 -15.86801 -15.67243 -15.50638 -14.99423 -14.90355 -14.74426 -14.56310 -14.38934 -14.23738 -14.03126 -13.90805 -13.59688 -13.25351 -13.23460 -13.04642 -12.96948 -12.80465 -12.74898 -12.34639 -12.26605 -12.13124 -12.12030 -11.99448 -11.37162 -11.12509 -10.98775 -10.77392 -10.53048 -10.30174 -9.82961 -9.03466 -7.98255 -5.26285 0.43191 1.10346 1.17002 1.26844 1.47517 1.47659 1.56081 2.03982 2.29180 2.53590 3.06434 3.16701 3.22481 3.39144 3.58672 3.67176 3.79478 3.81243 3.86260 3.89250 3.96339 3.96911 4.20072 4.25559 4.35032 4.37751 4.51519 4.64069 4.70821 4.75302 4.78500 4.79602 4.85456 4.90675 4.93764 5.04415 5.08717 5.26780 5.27515 5.36772 5.48328 5.78011 6.12965 6.23778 6.71949 6.83358 7.20170 7.32113 8.02569 8.28009 9.24252 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.002229 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.687623 B =12559.643024 C =13998.355848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.009 3.991 3 C -0.249 4.249 4 C 0.188 3.812 5 O -0.278 6.278 6 C 0.050 3.950 7 C 0.520 3.480 8 O -0.563 6.563 9 N -0.596 5.596 10 C 0.112 3.888 11 C -0.152 4.152 12 C 0.137 3.863 13 O -0.561 6.561 14 C 0.128 3.872 15 N -0.735 5.735 16 C -0.247 4.247 17 H 0.070 0.930 18 C -0.068 4.068 19 N -0.962 5.962 20 Si 0.969 3.031 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.274 1.274 24 C -0.111 4.111 25 C 0.124 3.876 26 N -0.433 5.433 27 O 0.091 5.909 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.198 0.802 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.383 0.617 39 H 0.022 0.978 40 H 0.026 0.974 41 H 0.377 0.623 42 H 0.252 0.748 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.329 10.549 -6.314 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.271 4.271 4 C -0.009 4.009 5 O -0.184 6.184 6 C -0.028 4.028 7 C 0.308 3.692 8 O -0.442 6.442 9 N -0.329 5.329 10 C -0.010 4.010 11 C -0.190 4.190 12 C 0.096 3.904 13 O -0.368 6.368 14 C 0.001 3.999 15 N -0.380 5.380 16 C -0.379 4.379 17 H 0.088 0.912 18 C -0.261 4.261 19 N -0.612 5.612 20 Si 0.798 3.202 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.199 1.199 24 C -0.150 4.150 25 C 0.002 3.998 26 N -0.161 5.161 27 O 0.031 5.969 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.215 0.785 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.232 0.768 39 H 0.039 0.961 40 H 0.044 0.956 41 H 0.211 0.789 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.472 11.112 -6.258 26.713 hybrid contribution 1.000 -0.929 0.668 1.519 sum -22.472 10.183 -5.590 25.297 Atomic orbital electron populations 1.20686 0.79863 1.06584 1.06015 1.25177 0.98107 0.84118 0.98018 1.22174 0.87144 1.03180 1.14552 1.22472 0.88741 0.88621 1.01066 1.86217 1.10796 1.31870 1.89549 1.22559 0.81252 0.93043 1.05967 1.20155 0.84293 0.88431 0.76336 1.90707 1.85737 1.16724 1.51073 1.48062 1.04678 1.08356 1.71848 1.21802 1.00970 0.78369 0.99819 1.22372 0.96199 1.01146 0.99323 1.21234 0.90399 0.95337 0.83448 1.86375 1.80405 1.33367 1.36696 1.21436 0.96322 0.85389 0.96725 1.42364 1.57007 1.05273 1.33338 1.19532 1.20136 0.92622 1.05605 0.91156 1.25456 1.02802 0.97108 1.00698 1.69753 1.49829 1.06776 1.34863 0.85213 0.78636 0.77869 0.78450 1.21502 1.22115 1.19878 1.21844 1.00546 0.93391 0.99209 1.21552 0.84654 0.94266 0.99330 1.74169 0.99109 1.14405 1.28383 1.84754 1.10087 1.33019 1.69020 0.87215 0.88212 0.86745 0.78525 0.87399 0.86999 0.88032 0.89287 0.90316 0.90830 0.76832 0.96054 0.95579 0.78892 0.93876 0.88984 0.89872 0.90001 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 71.24 0.74 0.58 16 2 C 0.01 0.12 7.48 25.00 0.19 0.31 16 3 C -0.25 -4.18 11.10 22.50 0.25 -3.93 16 4 C 0.19 4.52 8.01 85.79 0.69 5.21 16 5 O -0.28 -7.64 9.74 -71.21 -0.69 -8.33 16 6 C 0.05 1.17 4.49 71.24 0.32 1.49 16 7 C 0.52 14.36 7.78 87.66 0.68 15.04 16 8 O -0.56 -19.67 15.91 16.00 0.25 -19.41 16 9 N -0.60 -14.72 2.98 -819.64 -2.44 -17.16 16 10 C 0.11 2.49 6.08 86.22 0.52 3.02 16 11 C -0.15 -4.15 4.91 30.53 0.15 -4.00 16 12 C 0.14 4.08 0.71 -10.77 -0.01 4.07 16 13 O -0.56 -17.35 11.70 -148.98 -1.74 -19.10 16 14 C 0.13 4.86 5.40 86.38 0.47 5.32 16 15 N -0.73 -34.46 5.07 -343.44 -1.74 -36.20 16 16 C -0.25 -13.28 9.99 84.03 0.84 -12.44 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 18 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 19 N -0.96 -55.73 13.06 21.65 0.28 -55.45 16 20 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.11 -2.85 5.11 30.69 0.16 -2.69 16 25 C 0.12 3.09 6.20 86.38 0.54 3.62 16 26 N -0.43 -10.41 11.54 -172.58 -1.99 -12.40 16 27 O 0.09 1.77 11.19 71.23 0.80 2.57 16 28 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.10 0.04 8.14 -2.39 -0.02 0.03 16 30 H 0.11 -0.13 8.14 -2.38 -0.02 -0.15 16 31 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.11 2.29 7.68 -2.39 -0.02 2.27 16 33 H 0.11 2.25 7.95 -2.39 -0.02 2.23 16 34 H 0.10 1.84 5.93 -2.39 -0.01 1.82 16 35 H 0.09 1.91 7.81 -2.39 -0.02 1.90 16 36 H 0.08 2.46 6.82 -2.39 -0.02 2.44 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.38 12.07 7.85 -74.06 -0.58 11.49 16 39 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.38 18.01 5.58 -92.72 -0.52 17.50 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.08 2.04 7.81 -2.39 -0.02 2.02 16 46 H 0.09 2.29 7.01 -2.38 -0.02 2.28 16 Total: -1.00 -72.54 379.03 0.68 -71.86 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.07 Total: 34.27 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.00 Total: 12.33 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -5.89 Total: -121.21 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.39 Total: -44.27 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.54 0.68 -71.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724981719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.048 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds