Wall clock time and date at job start Tue Mar 31 2020 22:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21563 * 120.00283 * 359.72077 * 14 13 3 16 16 C 1.47730 * 119.99572 * 179.72382 * 14 13 3 17 17 C 1.39671 * 120.11870 * 359.97438 * 16 14 13 18 18 C 1.37810 * 119.88016 * 180.02562 * 17 16 14 19 19 C 1.38681 * 120.11863 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.88270 * 179.97438 * 19 18 17 21 21 C 1.38639 * 120.23749 * 0.02562 * 19 18 17 22 22 C 1.50703 * 119.94113 * 180.02562 * 21 19 18 23 23 O 1.42900 * 109.47316 * 180.02562 * 22 21 19 24 24 C 1.42894 * 113.99874 * 179.97438 * 23 22 21 25 25 C 1.53002 * 109.46726 * 179.97438 * 24 23 22 26 26 O 1.42897 * 109.47045 * 65.00304 * 25 24 23 27 27 C 1.42899 * 114.00053 * 179.97438 * 26 25 24 28 28 C 1.37858 * 120.11731 * 359.67551 * 21 19 18 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 31 31 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 32 32 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 33 33 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 34 34 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 36 36 H 1.07997 * 120.05840 * 0.02828 * 17 16 14 37 37 H 1.07997 * 119.94653 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.46803 * 299.99904 * 22 21 19 39 39 H 1.08995 * 109.47014 * 59.99899 * 22 21 19 40 40 H 1.08994 * 109.47699 * 299.99756 * 24 23 22 41 41 H 1.09001 * 109.47159 * 60.00401 * 24 23 22 42 42 H 1.09001 * 109.47455 * 184.99910 * 25 24 23 43 43 H 1.08997 * 109.47424 * 305.00331 * 25 24 23 44 44 H 1.08997 * 109.47364 * 299.99715 * 27 26 25 45 45 H 1.08997 * 109.47327 * 60.00181 * 27 26 25 46 46 H 1.09007 * 109.47459 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.05903 * 180.29987 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4300 16 6 0.0487 3.3352 -2.6251 17 6 0.9389 3.3740 -3.7006 18 6 0.5716 3.9969 -4.8738 19 6 -0.6792 4.5850 -4.9874 20 9 -1.0341 5.1948 -6.1394 21 6 -1.5663 4.5502 -3.9225 22 6 -2.9241 5.1909 -4.0535 23 8 -3.6488 5.0250 -2.8331 24 6 -4.9567 5.6003 -2.8511 25 6 -5.6367 5.3632 -1.5011 26 8 -4.9276 6.0683 -0.4803 27 6 -5.4838 5.9133 0.8268 28 6 -1.2114 3.9244 -2.7466 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8293 -0.0619 2.9495 35 1 2.2719 2.1232 -1.9977 36 1 1.9134 2.9167 -3.6130 37 1 1.2590 4.0272 -5.7062 38 1 -2.8055 6.2538 -4.2636 39 1 -3.4717 4.7182 -4.8688 40 1 -4.8800 6.6716 -3.0365 41 1 -5.5470 5.1361 -3.6412 42 1 -6.6647 5.7229 -1.5439 43 1 -5.6339 4.2969 -1.2751 44 1 -6.5086 6.2847 0.8320 45 1 -5.4782 4.8585 1.1013 46 1 -4.8892 6.4790 1.5442 47 1 -1.9050 3.8936 -1.9194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183793249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:57 Heat of formation + Delta-G solvation = -152.119160 kcal Electronic energy + Delta-G solvation = -29422.713518 eV Core-core repulsion = 25099.287389 eV Total energy + Delta-G solvation = -4323.426129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08297 -39.88410 -38.75953 -38.00458 -37.15032 -35.03753 -32.87081 -32.12744 -31.18125 -30.32698 -30.05491 -27.07595 -26.52578 -25.99392 -23.87429 -22.90616 -22.57279 -22.08765 -20.21768 -19.33034 -17.93932 -17.50702 -17.16459 -17.01100 -16.30314 -16.03269 -15.94306 -15.47206 -15.38766 -15.32143 -15.12813 -14.58384 -14.48914 -14.22867 -13.93782 -13.36994 -13.26436 -13.14636 -12.86069 -12.64773 -12.51311 -12.28730 -12.07963 -11.73385 -11.52441 -11.42319 -11.28998 -11.22678 -11.02173 -10.97711 -10.81112 -10.32343 -10.16297 -10.02223 -9.85734 -9.61818 -9.11000 -9.03370 -8.98407 -8.65913 -8.49065 -7.81494 -6.11572 -4.21197 0.78014 1.19069 3.10360 3.26155 3.26906 3.31608 3.32587 3.57573 4.01270 4.10190 4.11223 4.37170 4.48045 4.71138 4.76263 4.90959 4.99984 5.04923 5.09926 5.16443 5.17608 5.19561 5.21161 5.28293 5.30336 5.36728 5.48599 5.58334 5.76670 5.90933 6.05361 6.25836 6.37458 6.41662 6.48733 6.68506 6.76878 6.89699 7.01777 7.06812 7.22156 7.37839 7.44781 7.62730 7.74108 7.91072 8.18789 8.65214 8.77656 9.11219 9.45953 10.93717 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.002898 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.267359 B = 9660.060213 C =11527.415172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.542 3.458 15 O -0.538 6.538 16 C -0.131 4.131 17 C -0.061 4.061 18 C -0.159 4.159 19 C 0.114 3.886 20 F -0.139 7.139 21 C -0.135 4.135 22 C 0.110 3.890 23 O -0.370 6.370 24 C 0.065 3.935 25 C 0.062 3.938 26 O -0.382 6.382 27 C 0.031 3.969 28 C -0.013 4.013 29 H 0.022 0.978 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.265 0.735 35 H 0.387 0.613 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.944 9.250 -13.251 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.327 3.673 15 O -0.418 6.418 16 C -0.134 4.134 17 C -0.080 4.080 18 C -0.178 4.178 19 C 0.094 3.906 20 F -0.118 7.118 21 C -0.136 4.136 22 C 0.034 3.966 23 O -0.289 6.289 24 C -0.012 4.012 25 C -0.015 4.015 26 O -0.300 6.300 27 C -0.065 4.065 28 C -0.032 4.032 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.229 9.135 -12.269 21.584 hybrid contribution 0.939 0.045 -0.681 1.161 sum -14.290 9.180 -12.950 21.358 Atomic orbital electron populations 1.21845 0.98321 0.98064 1.01301 1.21934 0.92646 0.99713 1.02310 1.18820 0.94222 0.89223 0.80832 0.93104 1.21188 0.90660 1.39180 1.06364 0.92141 1.24876 0.98579 0.94786 0.95364 1.69884 1.35212 1.37451 1.09336 0.86518 0.84876 0.78317 0.77445 1.20173 1.21141 1.20179 1.46459 1.14435 1.55386 1.18640 1.18018 0.83114 0.79471 0.86662 1.90761 1.51338 1.59978 1.39688 1.20481 0.95388 1.01933 0.95604 1.21297 0.99366 0.95953 0.91393 1.20963 0.95352 1.01599 0.99863 1.17563 0.94246 0.97046 0.81737 1.91476 1.92232 1.80812 1.47245 1.19571 0.95915 1.03835 0.94308 1.21003 0.89205 0.99151 0.87239 1.87979 1.27544 1.78675 1.34719 1.22524 0.84280 0.98286 0.96095 1.22549 0.94289 0.97222 0.87458 1.87975 1.54264 1.71626 1.16183 1.22758 0.98060 1.01248 0.84461 1.21054 0.94932 0.90692 0.96505 0.95847 0.93091 0.94262 0.95016 0.88230 0.92492 0.77978 0.84278 0.84151 0.91635 0.91753 0.92289 0.91683 0.91898 0.92111 0.94406 0.93710 0.89437 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.52 37.16 0.32 -2.79 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.61 16 4 H 0.05 1.48 7.57 -51.93 -0.39 1.08 16 5 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.92 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.70 -14.52 4.97 -55.91 -0.28 -14.80 16 14 C 0.54 11.05 6.35 -12.38 -0.08 10.98 16 15 O -0.54 -12.80 13.49 5.31 0.07 -12.73 16 16 C -0.13 -2.14 5.87 -104.97 -0.62 -2.75 16 17 C -0.06 -0.81 9.54 -39.20 -0.37 -1.18 16 18 C -0.16 -1.84 10.01 -39.57 -0.40 -2.23 16 19 C 0.11 1.40 7.25 -39.27 -0.28 1.11 16 20 F -0.14 -1.61 16.79 2.25 0.04 -1.57 16 21 C -0.14 -1.79 5.88 -104.61 -0.62 -2.40 16 22 C 0.11 1.22 5.90 36.01 0.21 1.43 16 23 O -0.37 -4.66 8.78 -40.09 -0.35 -5.01 16 24 C 0.06 0.59 6.32 37.16 0.23 0.83 16 25 C 0.06 0.58 6.32 37.16 0.23 0.81 16 26 O -0.38 -4.72 10.67 -40.09 -0.43 -5.15 16 27 C 0.03 0.29 11.01 101.05 1.11 1.41 16 28 C -0.01 -0.20 8.92 -39.20 -0.35 -0.55 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 31 H 0.04 0.86 5.66 -51.93 -0.29 0.57 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.39 6.86 6.57 -40.82 -0.27 6.59 16 36 H 0.14 1.58 6.40 -52.49 -0.34 1.25 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.16 2.71 6.59 -52.49 -0.35 2.37 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -31.56 390.69 -7.72 -39.29 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.97 Total: 7.12 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.30 Total: -4.56 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.35 Total: -38.72 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.71 Total: -22.89 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.56 -7.72 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.833 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds