Wall clock time and date at job start Tue Mar 31 2020 22:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21563 * 120.00283 * 359.72077 * 14 13 3 16 16 C 1.47730 * 119.99572 * 179.72382 * 14 13 3 17 17 C 1.39671 * 120.11870 * 359.97438 * 16 14 13 18 18 C 1.37810 * 119.88016 * 180.02562 * 17 16 14 19 19 C 1.38681 * 120.11863 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.88270 * 179.97438 * 19 18 17 21 21 C 1.38639 * 120.23749 * 0.02562 * 19 18 17 22 22 C 1.50703 * 119.94113 * 180.02562 * 21 19 18 23 23 O 1.42900 * 109.47316 * 180.02562 * 22 21 19 24 24 C 1.42894 * 113.99874 * 179.97438 * 23 22 21 25 25 C 1.53002 * 109.46726 * 179.97438 * 24 23 22 26 26 O 1.42897 * 109.47045 * 65.00304 * 25 24 23 27 27 C 1.42899 * 114.00053 * 179.97438 * 26 25 24 28 28 C 1.37858 * 120.11731 * 359.67551 * 21 19 18 29 29 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 31 31 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 32 32 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 33 33 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 34 34 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 36 36 H 1.07997 * 120.05840 * 0.02828 * 17 16 14 37 37 H 1.07997 * 119.94653 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.46803 * 299.99904 * 22 21 19 39 39 H 1.08995 * 109.47014 * 59.99899 * 22 21 19 40 40 H 1.08994 * 109.47699 * 299.99756 * 24 23 22 41 41 H 1.09001 * 109.47159 * 60.00401 * 24 23 22 42 42 H 1.09001 * 109.47455 * 184.99910 * 25 24 23 43 43 H 1.08997 * 109.47424 * 305.00331 * 25 24 23 44 44 H 1.08997 * 109.47364 * 299.99715 * 27 26 25 45 45 H 1.08997 * 109.47327 * 60.00181 * 27 26 25 46 46 H 1.09007 * 109.47459 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.05903 * 180.29987 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4300 16 6 0.0487 3.3352 -2.6251 17 6 0.9389 3.3740 -3.7006 18 6 0.5716 3.9969 -4.8738 19 6 -0.6792 4.5850 -4.9874 20 9 -1.0341 5.1948 -6.1394 21 6 -1.5663 4.5502 -3.9225 22 6 -2.9241 5.1909 -4.0535 23 8 -3.6488 5.0250 -2.8331 24 6 -4.9567 5.6003 -2.8511 25 6 -5.6367 5.3632 -1.5011 26 8 -4.9276 6.0683 -0.4803 27 6 -5.4838 5.9133 0.8268 28 6 -1.2114 3.9244 -2.7466 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8293 -0.0619 2.9495 35 1 2.2719 2.1232 -1.9977 36 1 1.9134 2.9167 -3.6130 37 1 1.2590 4.0272 -5.7062 38 1 -2.8055 6.2538 -4.2636 39 1 -3.4717 4.7182 -4.8688 40 1 -4.8800 6.6716 -3.0365 41 1 -5.5470 5.1361 -3.6412 42 1 -6.6647 5.7229 -1.5439 43 1 -5.6339 4.2969 -1.2751 44 1 -6.5086 6.2847 0.8320 45 1 -5.4782 4.8585 1.1013 46 1 -4.8892 6.4790 1.5442 47 1 -1.9050 3.8936 -1.9194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183793249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:57 Heat of formation + Delta-G solvation = -172.245213 kcal Electronic energy + Delta-G solvation = -29423.586249 eV Core-core repulsion = 25099.287389 eV Total energy + Delta-G solvation = -4324.298860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.03916 -41.24769 -39.83679 -39.09615 -38.06517 -36.91546 -34.46258 -33.55390 -32.75194 -31.60055 -30.94531 -28.95832 -27.37839 -26.91458 -25.44616 -24.40714 -23.55560 -23.08072 -21.90283 -21.06524 -19.31619 -18.64629 -18.23134 -17.80972 -17.57012 -17.39910 -16.97344 -16.88051 -16.45138 -16.24474 -16.23017 -16.14904 -16.01383 -15.45207 -14.98693 -14.82395 -14.61907 -14.20764 -14.09037 -13.97865 -13.83630 -13.51918 -13.21425 -13.16095 -12.99882 -12.91203 -12.82613 -12.63593 -12.30799 -12.18137 -12.10123 -12.05096 -11.96412 -11.58338 -11.05738 -10.82917 -10.79890 -10.64392 -10.51001 -10.02379 -9.81868 -9.56237 -8.14388 -6.32030 -0.35670 0.14835 1.46584 1.48540 1.56089 1.81820 2.34496 2.49546 2.58444 2.73996 2.86339 3.08409 3.15193 3.53721 3.77532 3.85451 4.03298 4.10203 4.18990 4.24412 4.36289 4.37219 4.43749 4.47267 4.49443 4.55425 4.57156 4.57674 4.65837 4.76913 4.77149 4.84540 4.89935 4.99466 5.06746 5.14578 5.22585 5.30095 5.44177 5.55846 5.61402 5.70579 5.80717 5.93803 6.13192 6.17191 6.27909 6.74967 6.95416 7.33866 7.53799 8.90956 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.002898 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.267359 B = 9660.060213 C =11527.415172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.696 5.696 14 C 0.540 3.460 15 O -0.583 6.583 16 C -0.152 4.152 17 C -0.054 4.054 18 C -0.144 4.144 19 C 0.125 3.875 20 F -0.129 7.129 21 C -0.136 4.136 22 C 0.108 3.892 23 O -0.403 6.403 24 C 0.059 3.941 25 C 0.055 3.945 26 O -0.416 6.416 27 C 0.027 3.973 28 C -0.026 4.026 29 H 0.046 0.954 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.086 0.914 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 9.958 -16.593 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.187 1.187 13 N -0.345 5.345 14 C 0.328 3.672 15 O -0.465 6.465 16 C -0.155 4.155 17 C -0.072 4.072 18 C -0.162 4.162 19 C 0.105 3.895 20 F -0.107 7.107 21 C -0.138 4.138 22 C 0.032 3.968 23 O -0.323 6.323 24 C -0.017 4.017 25 C -0.021 4.021 26 O -0.336 6.336 27 C -0.069 4.069 28 C -0.045 4.045 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.617 9.856 -15.660 23.580 hybrid contribution 0.643 -0.104 0.304 0.718 sum -13.974 9.752 -15.356 22.938 Atomic orbital electron populations 1.21681 0.97204 0.99130 1.00126 1.21784 0.93543 0.99087 1.01487 1.18409 0.93810 0.89186 0.81069 0.98421 1.21546 0.91216 1.39091 1.06876 0.90787 1.25773 1.03340 0.94342 0.94978 1.70046 1.37168 1.38238 1.09864 0.85420 0.79047 0.78430 0.77575 1.19702 1.21328 1.18740 1.46174 1.15167 1.55393 1.17812 1.18633 0.82222 0.78653 0.87682 1.90734 1.52501 1.61536 1.41752 1.20130 0.96766 1.03875 0.94761 1.21449 0.99365 0.95671 0.90753 1.21304 0.95383 0.99567 0.99974 1.17601 0.94178 0.96230 0.81510 1.91510 1.92179 1.80496 1.46549 1.19758 0.97305 1.03130 0.93560 1.21154 0.88297 0.99899 0.87432 1.87963 1.29221 1.79319 1.35755 1.22778 0.83303 0.98887 0.96743 1.22783 0.95747 0.96581 0.87020 1.87921 1.55903 1.72247 1.17547 1.22869 0.99402 1.01080 0.83582 1.20816 0.94482 0.92222 0.96987 0.93471 0.95640 0.94062 0.93798 0.90812 0.92596 0.76025 0.82350 0.80424 0.90297 0.89507 0.91570 0.88758 0.88739 0.93158 0.91858 0.94269 0.89559 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.52 71.98 0.61 -5.16 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.44 2.24 44.25 0.10 14.54 16 4 H 0.00 -0.13 7.57 -2.39 -0.02 -0.15 16 5 C -0.55 -28.93 8.73 25.60 0.22 -28.71 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -52.46 11.29 21.45 0.24 -52.22 16 9 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 13 N -0.70 -29.32 4.97 -449.09 -2.23 -31.55 16 14 C 0.54 22.86 6.35 86.75 0.55 23.41 16 15 O -0.58 -29.63 13.49 -3.91 -0.05 -29.69 16 16 C -0.15 -4.98 5.87 -20.09 -0.12 -5.10 16 17 C -0.05 -1.29 9.54 22.51 0.21 -1.07 16 18 C -0.14 -2.77 10.01 22.27 0.22 -2.54 16 19 C 0.12 2.66 7.25 22.47 0.16 2.83 16 20 F -0.13 -2.48 16.79 44.97 0.75 -1.72 16 21 C -0.14 -3.43 5.88 -19.86 -0.12 -3.55 16 22 C 0.11 2.22 5.90 71.24 0.42 2.64 16 23 O -0.40 -10.12 8.78 -144.33 -1.27 -11.38 16 24 C 0.06 1.01 6.32 71.98 0.45 1.46 16 25 C 0.05 1.01 6.32 71.98 0.45 1.47 16 26 O -0.42 -10.57 10.67 -144.33 -1.54 -12.11 16 27 C 0.03 0.52 11.01 113.37 1.25 1.77 16 28 C -0.03 -0.83 8.92 22.52 0.20 -0.63 16 29 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.02 1.27 7.85 -2.39 -0.02 1.25 16 31 H 0.04 1.87 5.66 -2.39 -0.01 1.86 16 32 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 4.09 5.95 -2.39 -0.01 4.08 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.40 13.98 6.57 -92.71 -0.61 13.37 16 36 H 0.16 3.12 6.40 -2.91 -0.02 3.10 16 37 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.13 4.80 6.59 -2.91 -0.02 4.78 16 Total: -1.00 -72.41 390.69 3.56 -68.85 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.38 Total: 29.14 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.25 Total: -3.18 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.99 Total: -83.77 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -2.86 Total: -53.18 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.75 Total: -1.72 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -72.41 3.56 -68.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.392 kcal (2) G-P(sol) polarization free energy of solvation -72.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds