Wall clock time and date at job start Tue Mar 31 2020 22:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 H 1.08995 * 109.47057 * 305.69393 * 3 2 1 5 5 C 1.50700 * 109.46891 * 185.68837 * 3 2 1 6 6 H 1.07994 * 120.00360 * 275.00855 * 5 3 2 7 7 C 1.37883 * 119.99572 * 95.01129 * 5 3 2 8 8 N 1.31508 * 119.99757 * 184.83261 * 7 5 3 9 9 Si 1.86803 * 119.99953 * 4.82420 * 7 5 3 10 10 H 1.48494 * 109.46859 * 84.86619 * 9 7 5 11 11 H 1.48504 * 109.46940 * 204.86102 * 9 7 5 12 12 H 1.48499 * 109.47295 * 324.86184 * 9 7 5 13 13 N 1.46496 * 109.46740 * 65.69237 * 3 2 1 14 14 C 1.34779 * 120.00410 * 274.99811 * 13 3 2 15 15 O 1.21564 * 119.99474 * 0.02562 * 14 13 3 16 16 C 1.47723 * 120.00318 * 180.02562 * 14 13 3 17 17 C 1.39667 * 120.11650 * 359.97438 * 16 14 13 18 18 C 1.37815 * 119.87944 * 180.02562 * 17 16 14 19 19 C 1.38685 * 120.11889 * 0.02562 * 18 17 16 20 20 F 1.35095 * 119.88135 * 179.97438 * 19 18 17 21 21 C 1.38634 * 120.23685 * 0.02562 * 19 18 17 22 22 C 1.50697 * 119.93957 * 179.97438 * 21 19 18 23 23 O 1.42903 * 109.47184 * 180.02562 * 22 21 19 24 24 C 1.42902 * 114.00109 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.46787 * 179.97438 * 24 23 22 26 26 O 1.42893 * 109.47566 * 65.00121 * 25 24 23 27 27 C 1.42898 * 114.00245 * 180.02562 * 26 25 24 28 28 C 1.37861 * 120.12024 * 0.22952 * 21 19 18 29 29 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46858 * 300.00344 * 1 2 3 31 31 H 1.09003 * 109.46908 * 59.99227 * 1 2 3 32 32 H 1.09007 * 109.47013 * 239.99932 * 2 1 3 33 33 H 1.09000 * 109.47009 * 120.00253 * 2 1 3 34 34 H 0.96999 * 120.00222 * 180.02562 * 8 7 5 35 35 H 0.97005 * 120.00064 * 94.99780 * 13 3 2 36 36 H 1.08002 * 120.06277 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.94372 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47504 * 59.99962 * 22 21 19 39 39 H 1.09004 * 109.47360 * 299.99531 * 22 21 19 40 40 H 1.08998 * 109.46766 * 299.99190 * 24 23 22 41 41 H 1.08999 * 109.47362 * 59.99407 * 24 23 22 42 42 H 1.09013 * 109.46634 * 184.99872 * 25 24 23 43 43 H 1.09003 * 109.47203 * 304.99270 * 25 24 23 44 44 H 1.09002 * 109.47201 * 179.97438 * 27 26 25 45 45 H 1.09002 * 109.47075 * 299.99228 * 27 26 25 46 46 H 1.08996 * 109.47075 * 59.99432 * 27 26 25 47 47 H 1.07995 * 120.06101 * 179.72398 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1408 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5893 -1.3855 8 7 5.4205 1.4962 -1.5216 9 14 3.0419 1.9171 -2.8785 10 1 2.7756 3.3740 -2.9863 11 1 3.7403 1.4497 -4.1028 12 1 1.7563 1.1883 -2.7332 13 7 1.6668 2.0923 1.2588 14 6 0.4509 2.6588 1.3901 15 8 -0.3362 2.6301 0.4642 16 6 0.0747 3.3146 2.6593 17 6 0.9770 3.3485 3.7249 18 6 0.6208 3.9612 4.9068 19 6 -0.6312 4.5428 5.0395 20 9 -0.9756 5.1416 6.2004 21 6 -1.5310 4.5110 3.9853 22 6 -2.8898 5.1446 4.1369 23 8 -3.6290 4.9825 2.9246 24 6 -4.9393 5.5516 2.9622 25 6 -5.6344 5.3203 1.6190 26 8 -5.8362 3.9195 1.4221 27 6 -6.4817 3.5928 0.1898 28 6 -1.1868 3.8962 2.8003 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8253 1.5983 -2.3972 35 1 2.2947 2.1149 1.9978 36 1 1.9521 2.8955 3.6228 37 1 1.3178 3.9884 5.7313 38 1 -2.7735 6.2068 4.3526 39 1 -3.4256 4.6641 4.9556 40 1 -5.5174 5.0801 3.7569 41 1 -4.8651 6.6222 3.1530 42 1 -6.5979 5.8302 1.6161 43 1 -5.0123 5.7143 0.8153 44 1 -6.5977 2.5115 0.1158 45 1 -7.4627 4.0668 0.1566 46 1 -5.8769 3.9509 -0.6433 47 1 -1.8901 3.8681 1.9812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183793266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:01 Heat of formation + Delta-G solvation = -152.834750 kcal Electronic energy + Delta-G solvation = -29549.302183 eV Core-core repulsion = 25225.845023 eV Total energy + Delta-G solvation = -4323.457159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.11098 -39.96681 -38.83094 -38.09478 -37.20404 -35.16931 -32.86963 -32.23172 -31.53628 -30.44571 -30.13731 -27.55877 -26.59420 -26.05383 -23.86509 -22.87558 -22.56502 -22.12790 -20.33790 -19.55139 -17.96651 -17.61819 -17.23135 -17.05268 -16.36658 -16.30572 -16.06246 -15.66886 -15.43393 -15.35311 -15.20201 -14.73111 -14.52595 -14.15563 -13.97670 -13.51462 -13.29585 -13.16351 -12.96025 -12.76992 -12.59479 -12.44825 -12.15749 -11.93151 -11.86180 -11.71773 -11.53799 -11.33282 -11.04870 -10.94604 -10.66934 -10.66039 -10.06263 -9.98977 -9.90674 -9.84007 -9.25567 -9.18016 -9.01920 -8.71359 -8.69967 -8.00106 -6.24317 -4.28111 0.73352 1.15643 3.03395 3.23177 3.26985 3.34705 3.42507 3.52685 3.90657 4.01544 4.07026 4.32617 4.44365 4.68283 4.72525 4.86960 4.96045 5.01295 5.02895 5.09296 5.13327 5.13998 5.17868 5.23822 5.27005 5.33200 5.44376 5.52276 5.71830 5.87418 6.01770 6.08218 6.12010 6.19406 6.29118 6.32831 6.66107 6.73653 6.81769 6.85290 6.97145 6.98144 7.03349 7.30383 7.35547 7.55633 8.12526 8.54853 8.76000 8.95264 9.37866 10.87277 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.003257 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.879141 B = 8595.189799 C =10609.714907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.696 5.696 14 C 0.542 3.458 15 O -0.543 6.543 16 C -0.133 4.133 17 C -0.059 4.059 18 C -0.159 4.159 19 C 0.115 3.885 20 F -0.138 7.138 21 C -0.136 4.136 22 C 0.110 3.890 23 O -0.371 6.371 24 C 0.065 3.935 25 C 0.062 3.938 26 O -0.382 6.382 27 C 0.031 3.969 28 C -0.013 4.013 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.392 0.608 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.038 0.962 46 H 0.044 0.956 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.167 8.150 12.051 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.182 1.182 13 N -0.345 5.345 14 C 0.328 3.672 15 O -0.423 6.423 16 C -0.136 4.136 17 C -0.078 4.078 18 C -0.177 4.177 19 C 0.096 3.904 20 F -0.117 7.117 21 C -0.137 4.137 22 C 0.034 3.966 23 O -0.290 6.290 24 C -0.012 4.012 25 C -0.015 4.015 26 O -0.301 6.301 27 C -0.065 4.065 28 C -0.031 4.031 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.408 7.895 11.232 23.773 hybrid contribution -0.275 0.654 -0.195 0.735 sum -19.682 8.549 11.036 24.130 Atomic orbital electron populations 1.21913 0.97334 0.98906 1.02142 1.22075 0.93736 0.99324 1.01265 1.19205 0.95541 0.89161 0.82627 0.92983 1.21001 0.88622 1.51819 0.95487 0.90325 1.24931 0.94867 0.93621 0.98810 1.69877 1.09770 1.48252 1.24536 0.86915 0.81328 0.79688 0.82195 1.19841 1.21210 1.18247 1.46577 1.14108 1.55486 1.18300 1.18121 0.83034 0.79307 0.86743 1.90749 1.50831 1.60052 1.40672 1.20414 0.95393 1.02294 0.95514 1.21317 0.99350 0.95797 0.91340 1.20982 0.95379 1.01584 0.99782 1.17573 0.94223 0.97090 0.81523 1.91480 1.92521 1.81246 1.46455 1.19565 0.95732 1.04025 0.94356 1.21008 0.88992 0.99034 0.87576 1.87974 1.26660 1.79496 1.34845 1.22525 0.83905 0.97415 0.97339 1.22554 0.98491 0.83416 0.97060 1.87970 1.80260 1.22853 1.38986 1.22755 0.95665 1.01820 0.86284 1.21044 0.94933 0.90745 0.96425 0.95072 0.93077 0.93069 0.92038 0.92979 0.92220 0.77391 0.84130 0.84048 0.91706 0.91622 0.92273 0.91642 0.91868 0.92121 0.89472 0.94365 0.93759 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.53 37.16 0.32 -2.63 16 2 C -0.12 -2.70 5.59 -26.73 -0.15 -2.85 16 3 C 0.24 5.55 1.89 -69.08 -0.13 5.42 16 4 H 0.05 1.34 4.73 -51.93 -0.25 1.09 16 5 C -0.53 -14.05 9.05 -34.44 -0.31 -14.36 16 6 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 9 Si 0.87 21.45 26.99 -169.99 -4.59 16.86 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -6.25 6.82 56.52 0.39 -5.86 16 13 N -0.70 -13.88 4.98 -55.92 -0.28 -14.16 16 14 C 0.54 10.60 6.37 -12.38 -0.08 10.52 16 15 O -0.54 -12.27 13.48 5.31 0.07 -12.20 16 16 C -0.13 -2.10 5.87 -104.97 -0.62 -2.72 16 17 C -0.06 -0.76 9.54 -39.20 -0.37 -1.14 16 18 C -0.16 -1.80 10.01 -39.57 -0.40 -2.19 16 19 C 0.12 1.39 7.25 -39.27 -0.28 1.10 16 20 F -0.14 -1.58 16.79 2.25 0.04 -1.54 16 21 C -0.14 -1.75 5.88 -104.62 -0.62 -2.36 16 22 C 0.11 1.19 5.90 36.00 0.21 1.40 16 23 O -0.37 -4.54 8.78 -40.08 -0.35 -4.89 16 24 C 0.06 0.57 6.32 37.16 0.23 0.81 16 25 C 0.06 0.56 6.32 37.16 0.23 0.79 16 26 O -0.38 -4.54 10.67 -40.08 -0.43 -4.97 16 27 C 0.03 0.28 11.01 101.05 1.11 1.39 16 28 C -0.01 -0.19 8.92 -39.20 -0.35 -0.54 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.04 5.63 -51.93 -0.29 0.75 16 31 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 32 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.39 6.80 6.62 -40.82 -0.27 6.53 16 36 H 0.14 1.58 6.40 -52.49 -0.34 1.24 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.16 2.62 6.59 -52.49 -0.35 2.27 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -32.39 390.56 -7.14 -39.53 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.97 Total: 5.80 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.29 Total: -5.18 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.50 Total: -39.30 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.71 Total: -22.05 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.59 Total: 16.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.39 -7.14 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.306 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds