Wall clock time and date at job start Tue Mar 31 2020 22:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 H 1.08995 * 109.47057 * 305.69393 * 3 2 1 5 5 C 1.50700 * 109.46891 * 185.68837 * 3 2 1 6 6 H 1.07994 * 120.00360 * 275.00855 * 5 3 2 7 7 C 1.37883 * 119.99572 * 95.01129 * 5 3 2 8 8 N 1.31508 * 119.99757 * 184.83261 * 7 5 3 9 9 Si 1.86803 * 119.99953 * 4.82420 * 7 5 3 10 10 H 1.48494 * 109.46859 * 84.86619 * 9 7 5 11 11 H 1.48504 * 109.46940 * 204.86102 * 9 7 5 12 12 H 1.48499 * 109.47295 * 324.86184 * 9 7 5 13 13 N 1.46496 * 109.46740 * 65.69237 * 3 2 1 14 14 C 1.34779 * 120.00410 * 274.99811 * 13 3 2 15 15 O 1.21564 * 119.99474 * 0.02562 * 14 13 3 16 16 C 1.47723 * 120.00318 * 180.02562 * 14 13 3 17 17 C 1.39667 * 120.11650 * 359.97438 * 16 14 13 18 18 C 1.37815 * 119.87944 * 180.02562 * 17 16 14 19 19 C 1.38685 * 120.11889 * 0.02562 * 18 17 16 20 20 F 1.35095 * 119.88135 * 179.97438 * 19 18 17 21 21 C 1.38634 * 120.23685 * 0.02562 * 19 18 17 22 22 C 1.50697 * 119.93957 * 179.97438 * 21 19 18 23 23 O 1.42903 * 109.47184 * 180.02562 * 22 21 19 24 24 C 1.42902 * 114.00109 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.46787 * 179.97438 * 24 23 22 26 26 O 1.42893 * 109.47566 * 65.00121 * 25 24 23 27 27 C 1.42898 * 114.00245 * 180.02562 * 26 25 24 28 28 C 1.37861 * 120.12024 * 0.22952 * 21 19 18 29 29 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46858 * 300.00344 * 1 2 3 31 31 H 1.09003 * 109.46908 * 59.99227 * 1 2 3 32 32 H 1.09007 * 109.47013 * 239.99932 * 2 1 3 33 33 H 1.09000 * 109.47009 * 120.00253 * 2 1 3 34 34 H 0.96999 * 120.00222 * 180.02562 * 8 7 5 35 35 H 0.97005 * 120.00064 * 94.99780 * 13 3 2 36 36 H 1.08002 * 120.06277 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.94372 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47504 * 59.99962 * 22 21 19 39 39 H 1.09004 * 109.47360 * 299.99531 * 22 21 19 40 40 H 1.08998 * 109.46766 * 299.99190 * 24 23 22 41 41 H 1.08999 * 109.47362 * 59.99407 * 24 23 22 42 42 H 1.09013 * 109.46634 * 184.99872 * 25 24 23 43 43 H 1.09003 * 109.47203 * 304.99270 * 25 24 23 44 44 H 1.09002 * 109.47201 * 179.97438 * 27 26 25 45 45 H 1.09002 * 109.47075 * 299.99228 * 27 26 25 46 46 H 1.08996 * 109.47075 * 59.99432 * 27 26 25 47 47 H 1.07995 * 120.06101 * 179.72398 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1408 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5893 -1.3855 8 7 5.4205 1.4962 -1.5216 9 14 3.0419 1.9171 -2.8785 10 1 2.7756 3.3740 -2.9863 11 1 3.7403 1.4497 -4.1028 12 1 1.7563 1.1883 -2.7332 13 7 1.6668 2.0923 1.2588 14 6 0.4509 2.6588 1.3901 15 8 -0.3362 2.6301 0.4642 16 6 0.0747 3.3146 2.6593 17 6 0.9770 3.3485 3.7249 18 6 0.6208 3.9612 4.9068 19 6 -0.6312 4.5428 5.0395 20 9 -0.9756 5.1416 6.2004 21 6 -1.5310 4.5110 3.9853 22 6 -2.8898 5.1446 4.1369 23 8 -3.6290 4.9825 2.9246 24 6 -4.9393 5.5516 2.9622 25 6 -5.6344 5.3203 1.6190 26 8 -5.8362 3.9195 1.4221 27 6 -6.4817 3.5928 0.1898 28 6 -1.1868 3.8962 2.8003 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8253 1.5983 -2.3972 35 1 2.2947 2.1149 1.9978 36 1 1.9521 2.8955 3.6228 37 1 1.3178 3.9884 5.7313 38 1 -2.7735 6.2068 4.3526 39 1 -3.4256 4.6641 4.9556 40 1 -5.5174 5.0801 3.7569 41 1 -4.8651 6.6222 3.1530 42 1 -6.5979 5.8302 1.6161 43 1 -5.0123 5.7143 0.8153 44 1 -6.5977 2.5115 0.1158 45 1 -7.4627 4.0668 0.1566 46 1 -5.8769 3.9509 -0.6433 47 1 -1.8901 3.8681 1.9812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183793266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:00 Heat of formation + Delta-G solvation = -174.022026 kcal Electronic energy + Delta-G solvation = -29550.220932 eV Core-core repulsion = 25225.845023 eV Total energy + Delta-G solvation = -4324.375909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.04746 -41.29381 -39.86697 -39.11331 -38.06987 -36.94624 -34.47966 -33.81264 -32.89763 -31.63379 -30.95129 -29.41689 -27.38485 -26.91915 -25.29667 -24.33901 -23.56568 -23.09069 -21.88727 -21.20566 -19.45081 -18.76966 -18.27427 -17.92444 -17.79893 -17.42877 -16.96808 -16.91962 -16.47837 -16.28547 -16.19425 -16.10888 -16.04936 -15.49769 -15.01569 -14.85187 -14.77640 -14.25264 -14.20381 -14.03190 -13.84213 -13.74316 -13.70301 -13.23126 -13.01457 -12.94137 -12.87309 -12.55698 -12.36741 -12.29920 -12.10849 -11.96975 -11.87403 -11.69325 -11.20459 -10.86836 -10.83256 -10.79683 -10.64537 -10.03222 -9.85470 -9.60902 -8.38809 -6.44166 -0.37043 0.14279 1.28930 1.33757 1.44766 1.78425 2.27245 2.38061 2.49144 2.71582 2.85960 3.02714 3.08204 3.53125 3.77052 3.81798 4.02883 4.09333 4.18531 4.23882 4.31910 4.36015 4.36801 4.41857 4.43805 4.47085 4.52708 4.55494 4.57805 4.66858 4.76686 4.84212 4.84470 4.89841 4.99277 5.10648 5.13002 5.23120 5.25085 5.30003 5.41812 5.55898 5.70075 5.76211 6.12221 6.14093 6.27191 6.60781 6.87859 7.21436 7.42641 8.75992 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.003257 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.879141 B = 8595.189799 C =10609.714907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.242 3.758 4 H 0.030 0.970 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.037 3.963 8 N -0.928 5.928 9 Si 0.921 3.079 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.256 1.256 13 N -0.695 5.695 14 C 0.543 3.457 15 O -0.580 6.580 16 C -0.153 4.153 17 C -0.054 4.054 18 C -0.146 4.146 19 C 0.125 3.875 20 F -0.129 7.129 21 C -0.137 4.137 22 C 0.108 3.892 23 O -0.402 6.402 24 C 0.059 3.941 25 C 0.055 3.945 26 O -0.415 6.415 27 C 0.027 3.973 28 C -0.024 4.024 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.270 0.730 35 H 0.404 0.596 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.495 8.959 14.158 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.048 0.952 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.164 4.164 8 N -0.566 5.566 9 Si 0.746 3.254 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.180 1.180 13 N -0.345 5.345 14 C 0.331 3.669 15 O -0.462 6.462 16 C -0.156 4.156 17 C -0.073 4.073 18 C -0.164 4.164 19 C 0.105 3.895 20 F -0.108 7.108 21 C -0.138 4.138 22 C 0.032 3.968 23 O -0.322 6.322 24 C -0.017 4.017 25 C -0.021 4.021 26 O -0.335 6.335 27 C -0.069 4.069 28 C -0.043 4.043 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.241 0.759 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.743 8.712 13.368 26.170 hybrid contribution 0.079 0.459 -0.710 0.850 sum -20.664 9.171 12.658 25.910 Atomic orbital electron populations 1.21777 0.96054 1.00284 1.01061 1.21991 0.94773 0.97930 1.01461 1.18950 0.93436 0.90303 0.83525 0.95233 1.21191 0.90074 1.50378 0.94688 0.92153 1.25542 0.95676 0.93963 1.01236 1.69963 1.11119 1.50288 1.25269 0.86136 0.80080 0.79221 0.79947 1.20204 1.20254 1.17982 1.46281 1.14906 1.55697 1.17576 1.18604 0.82105 0.78480 0.87708 1.90723 1.51752 1.61338 1.42380 1.20106 0.96665 1.04129 0.94716 1.21452 0.99320 0.95602 0.90897 1.21298 0.95500 0.99748 0.99862 1.17611 0.94163 0.96353 0.81356 1.91510 1.92471 1.80960 1.45840 1.19754 0.97059 1.03335 0.93616 1.21147 0.87935 1.00118 0.87569 1.87954 1.28198 1.80292 1.35710 1.22774 0.82567 0.98960 0.97415 1.22771 0.99905 0.82420 0.96995 1.87917 1.80846 1.24637 1.40098 1.22871 0.96572 1.02210 0.85280 1.20830 0.94436 0.92091 0.96928 0.92359 0.93473 0.94856 0.92891 0.91705 0.92027 0.75891 0.82549 0.80663 0.89683 0.90225 0.91520 0.88908 0.88831 0.93163 0.89413 0.91998 0.94268 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.53 71.98 0.61 -4.75 16 2 C -0.12 -5.25 5.59 30.60 0.17 -5.08 16 3 C 0.24 11.37 1.89 44.25 0.08 11.45 16 4 H 0.03 1.54 4.73 -2.39 -0.01 1.53 16 5 C -0.53 -28.06 9.05 25.60 0.23 -27.83 16 6 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 7 C 0.04 2.05 5.47 84.66 0.46 2.51 16 8 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 9 Si 0.92 44.81 26.99 68.60 1.85 46.66 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.26 -12.22 6.82 99.48 0.68 -11.54 16 13 N -0.70 -27.67 4.98 -449.10 -2.24 -29.90 16 14 C 0.54 21.43 6.37 86.75 0.55 21.98 16 15 O -0.58 -26.93 13.48 -3.92 -0.05 -26.99 16 16 C -0.15 -4.78 5.87 -20.09 -0.12 -4.90 16 17 C -0.05 -1.28 9.54 22.51 0.21 -1.06 16 18 C -0.15 -2.80 10.01 22.28 0.22 -2.58 16 19 C 0.12 2.63 7.25 22.47 0.16 2.79 16 20 F -0.13 -2.47 16.79 44.97 0.75 -1.71 16 21 C -0.14 -3.30 5.88 -19.86 -0.12 -3.42 16 22 C 0.11 2.13 5.90 71.23 0.42 2.55 16 23 O -0.40 -9.59 8.78 -144.34 -1.27 -10.86 16 24 C 0.06 0.95 6.32 71.98 0.45 1.41 16 25 C 0.06 0.96 6.32 71.98 0.45 1.41 16 26 O -0.42 -9.86 10.67 -144.34 -1.54 -11.39 16 27 C 0.03 0.47 11.01 113.37 1.25 1.72 16 28 C -0.02 -0.72 8.92 22.52 0.20 -0.52 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.90 5.63 -2.39 -0.01 1.89 16 31 H 0.03 1.42 7.88 -2.39 -0.02 1.40 16 32 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.40 13.79 6.62 -92.70 -0.61 13.18 16 36 H 0.16 3.12 6.40 -2.91 -0.02 3.11 16 37 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.13 4.63 6.59 -2.91 -0.02 4.61 16 Total: -1.00 -71.46 390.56 3.42 -68.04 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.35 Total: 25.09 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.26 Total: -4.31 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -1.94 Total: -84.53 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -2.86 Total: -49.24 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.75 Total: -1.71 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.85 Total: 46.66 kcal Total: -71.46 3.42 -68.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.979 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds