Wall clock time and date at job start Tue Mar 31 2020 22:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 N 1.46501 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.36884 * 119.99829 * 283.33645 * 4 3 2 6 6 H 1.08000 * 120.00238 * 314.91244 * 5 4 3 7 7 C 1.39042 * 120.00232 * 134.91380 * 5 4 3 8 8 N 1.31369 * 119.99845 * 338.85187 * 7 5 4 9 9 Si 1.86802 * 120.00059 * 158.84385 * 7 5 4 10 10 H 1.48503 * 109.46690 * 90.00584 * 9 7 5 11 11 H 1.48504 * 109.47077 * 210.00208 * 9 7 5 12 12 H 1.48496 * 109.47331 * 330.00419 * 9 7 5 13 13 C 1.34783 * 120.00223 * 103.33288 * 4 3 2 14 14 O 1.21595 * 120.00148 * 186.50568 * 13 4 3 15 15 C 1.47609 * 119.99675 * 6.50746 * 13 4 3 16 16 C 1.39740 * 120.12633 * 323.95559 * 15 13 4 17 17 C 1.37799 * 119.86949 * 179.97438 * 16 15 13 18 18 C 1.38684 * 120.12810 * 0.02562 * 17 16 15 19 19 F 1.35108 * 119.87166 * 179.97438 * 18 17 16 20 20 C 1.38648 * 120.25613 * 359.97438 * 18 17 16 21 21 C 1.50698 * 119.94102 * 179.97438 * 20 18 17 22 22 O 1.42900 * 109.47061 * 180.02562 * 21 20 18 23 23 C 1.42898 * 113.99985 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47281 * 180.02562 * 23 22 21 25 25 O 1.42899 * 109.47300 * 64.99821 * 24 23 22 26 26 C 1.42902 * 114.00136 * 180.02562 * 25 24 23 27 27 C 1.37844 * 120.11698 * 0.25688 * 20 18 17 28 28 H 1.08994 * 109.47200 * 300.00292 * 1 2 3 29 29 H 1.08998 * 109.46738 * 60.00122 * 1 2 3 30 30 H 1.09002 * 109.47148 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47353 * 239.99480 * 2 1 3 32 32 H 1.09009 * 109.47035 * 119.99535 * 2 1 3 33 33 H 1.08994 * 109.47298 * 59.99767 * 3 2 1 34 34 H 1.08999 * 109.46723 * 299.99836 * 3 2 1 35 35 H 0.97006 * 120.00063 * 185.04235 * 8 7 5 36 36 H 1.08001 * 120.06154 * 359.97438 * 16 15 13 37 37 H 1.08007 * 119.93319 * 179.97438 * 17 16 15 38 38 H 1.09000 * 109.46952 * 60.00271 * 21 20 18 39 39 H 1.09000 * 109.46929 * 299.99789 * 21 20 18 40 40 H 1.09007 * 109.47227 * 299.99739 * 23 22 21 41 41 H 1.08996 * 109.47153 * 60.00265 * 23 22 21 42 42 H 1.08997 * 109.47711 * 185.00255 * 24 23 22 43 43 H 1.09004 * 109.47185 * 304.99903 * 24 23 22 44 44 H 1.08998 * 109.46830 * 60.00370 * 26 25 24 45 45 H 1.09004 * 109.46814 * 179.97438 * 26 25 24 46 46 H 1.08990 * 109.47155 * 300.00086 * 26 25 24 47 47 H 1.08008 * 120.05744 * 179.71871 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.1692 1.1544 6 1 3.8867 1.6298 2.0834 7 6 5.2728 0.2986 1.1306 8 7 5.3985 -0.5671 0.1506 9 14 6.5504 0.3602 2.4921 10 1 6.1521 -0.5610 3.5866 11 1 7.8700 -0.0544 1.9517 12 1 6.6446 1.7449 3.0202 13 6 4.1795 1.7115 -1.1349 14 8 5.3896 1.5962 -1.1652 15 6 3.4490 2.1461 -2.3417 16 6 2.1885 1.6152 -2.6278 17 6 1.5110 2.0251 -3.7556 18 6 2.0782 2.9622 -4.6062 19 9 1.4096 3.3601 -5.7108 20 6 3.3286 3.4924 -4.3274 21 6 3.9384 4.5098 -5.2569 22 8 5.2196 4.9015 -4.7598 23 6 5.8870 5.8696 -5.5719 24 6 7.2412 6.2124 -4.9478 25 8 8.0817 5.0570 -4.9691 26 6 9.3775 5.2703 -4.4055 27 6 4.0174 3.0862 -3.2047 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 6.1131 -1.2228 0.1713 36 1 1.7461 0.8851 -1.9663 37 1 0.5368 1.6152 -3.9779 38 1 3.2888 5.3830 -5.3163 39 1 4.0521 4.0732 -6.2492 40 1 6.0407 5.4618 -6.5710 41 1 5.2779 6.7711 -5.6370 42 1 7.7112 7.0142 -5.5172 43 1 7.0948 6.5362 -3.9173 44 1 9.2750 5.5743 -3.3638 45 1 9.9536 4.3465 -4.4591 46 1 9.8920 6.0526 -4.9634 47 1 4.9934 3.4964 -2.9909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266103178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:59 Heat of formation + Delta-G solvation = -116.740670 kcal Electronic energy + Delta-G solvation = -30240.550026 eV Core-core repulsion = 25918.658024 eV Total energy + Delta-G solvation = -4321.892003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.72764 -39.63267 -38.53950 -37.59904 -36.80209 -35.13872 -32.81301 -32.05450 -31.19506 -30.04366 -29.95807 -26.53014 -26.16087 -25.42848 -24.76840 -22.88021 -22.32197 -21.65367 -20.81775 -19.44418 -17.45383 -17.23331 -16.90302 -16.72527 -16.01384 -15.90366 -15.73379 -15.34992 -15.16712 -15.08226 -14.77692 -14.66118 -14.05689 -13.68945 -13.68239 -13.40211 -13.07858 -12.99853 -12.83114 -12.57823 -12.31469 -12.10520 -11.90644 -11.77076 -11.39277 -11.34243 -11.23935 -11.14316 -10.95907 -10.85586 -10.67428 -10.53158 -10.34432 -10.21955 -9.98534 -9.77138 -9.71662 -8.75803 -8.54779 -8.28908 -7.95914 -7.10867 -6.11600 -3.83601 1.28516 1.57835 3.30510 3.41564 3.43803 3.49157 3.67545 3.70655 4.29703 4.49141 4.59497 4.75728 4.87332 4.95512 5.05414 5.10220 5.17516 5.22646 5.27463 5.29305 5.31324 5.37129 5.43787 5.55353 5.57561 5.62352 5.63708 5.67819 5.69050 5.76688 5.95126 6.02296 6.22026 6.29675 6.34920 6.39469 6.43202 6.48702 6.63796 6.79803 6.86376 7.06413 7.11892 7.20349 7.22627 7.62970 8.28762 9.04051 9.17086 9.63950 10.28640 10.96365 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008313 B = 0.004354 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.229809 B = 6429.984578 C = 9427.961674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.082 3.918 4 N -0.439 5.439 5 C -0.352 4.352 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.820 5.820 9 Si 0.910 3.090 10 H -0.282 1.282 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.503 3.497 14 O -0.526 6.526 15 C -0.101 4.101 16 C -0.092 4.092 17 C -0.160 4.160 18 C 0.093 3.907 19 F -0.146 7.146 20 C -0.134 4.134 21 C 0.113 3.887 22 O -0.369 6.369 23 C 0.064 3.936 24 C 0.062 3.938 25 O -0.380 6.380 26 C 0.032 3.968 27 C -0.029 4.029 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.265 0.735 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.087 0.913 46 H 0.037 0.963 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 10.484 -10.079 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.041 4.041 4 N -0.160 5.160 5 C -0.479 4.479 6 H 0.097 0.903 7 C -0.135 4.135 8 N -0.452 5.452 9 Si 0.737 3.263 10 H -0.209 1.209 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.290 3.710 14 O -0.404 6.404 15 C -0.105 4.105 16 C -0.111 4.111 17 C -0.179 4.179 18 C 0.073 3.927 19 F -0.124 7.124 20 C -0.135 4.135 21 C 0.037 3.963 22 O -0.288 6.288 23 C -0.012 4.012 24 C -0.015 4.015 25 O -0.299 6.299 26 C -0.065 4.065 27 C -0.048 4.048 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.055 0.945 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.951 10.075 -10.126 14.820 hybrid contribution 0.416 0.243 0.260 0.547 sum -3.535 10.318 -9.866 14.707 Atomic orbital electron populations 1.21782 0.96761 1.01064 1.01190 1.21864 0.93750 0.98405 1.03447 1.22158 0.84561 0.96028 1.01397 1.43135 1.02688 1.61279 1.08900 1.18934 1.13573 1.28058 0.87285 0.90256 1.25267 0.98327 0.93602 0.96346 1.69823 1.30470 1.13796 1.31108 0.86256 0.81032 0.78492 0.80545 1.20887 1.20924 1.19544 1.17803 0.87247 0.82780 0.83132 1.90648 1.13629 1.53287 1.82827 1.20739 0.94727 0.97548 0.97510 1.22004 0.93927 0.99437 0.95707 1.20943 1.01705 0.99533 0.95727 1.17468 0.91084 0.98722 0.85398 1.91438 1.80135 1.89802 1.51072 1.19474 0.94095 1.01245 0.98675 1.20981 0.84527 0.95535 0.95291 1.88002 1.30931 1.60448 1.49430 1.22504 0.91864 0.92158 0.94714 1.22546 0.89676 0.88375 1.00887 1.87996 1.25153 1.34523 1.82233 1.22748 0.84388 1.02003 0.97347 1.20930 0.99460 0.93811 0.90625 0.92938 0.93296 0.93139 0.91995 0.90509 0.92645 0.90444 0.92480 0.82625 0.84807 0.92050 0.91933 0.92406 0.91794 0.92013 0.92188 0.93792 0.89476 0.94477 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.90 37.16 0.37 -1.65 16 2 C -0.14 -2.45 5.23 -26.73 -0.14 -2.59 16 3 C 0.08 1.61 4.86 -4.04 -0.02 1.59 16 4 N -0.44 -11.03 2.53 -115.97 -0.29 -11.33 16 5 C -0.35 -9.61 9.03 -15.00 -0.14 -9.74 16 6 H 0.08 2.08 7.92 -52.49 -0.42 1.67 16 7 C 0.08 2.15 4.29 -17.45 -0.07 2.08 16 8 N -0.82 -24.25 11.82 55.50 0.66 -23.59 16 9 Si 0.91 21.90 29.61 -169.99 -5.03 16.87 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.50 13.19 6.83 -12.43 -0.08 13.11 16 14 O -0.53 -16.07 14.45 5.28 0.08 -15.99 16 15 C -0.10 -2.17 5.45 -104.97 -0.57 -2.74 16 16 C -0.09 -1.65 7.37 -39.18 -0.29 -1.94 16 17 C -0.16 -2.45 10.01 -39.58 -0.40 -2.84 16 18 C 0.09 1.46 7.25 -39.27 -0.28 1.17 16 19 F -0.15 -2.10 16.79 2.25 0.04 -2.07 16 20 C -0.13 -2.24 5.88 -104.62 -0.62 -2.85 16 21 C 0.11 1.57 5.90 36.00 0.21 1.79 16 22 O -0.37 -5.64 8.78 -40.08 -0.35 -5.99 16 23 C 0.06 0.72 6.32 37.16 0.23 0.96 16 24 C 0.06 0.69 6.32 37.16 0.23 0.93 16 25 O -0.38 -5.47 10.67 -40.08 -0.43 -5.90 16 26 C 0.03 0.35 11.01 101.05 1.11 1.46 16 27 C -0.03 -0.58 8.94 -39.18 -0.35 -0.93 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.20 6.98 -51.93 -0.36 0.83 16 32 H 0.08 1.56 8.07 -51.92 -0.42 1.14 16 33 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 34 H 0.08 1.37 4.01 -51.93 -0.21 1.16 16 35 H 0.27 7.52 8.32 -40.82 -0.34 7.18 16 36 H 0.16 2.68 3.38 -52.49 -0.18 2.51 16 37 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.15 3.17 6.95 -52.48 -0.36 2.81 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -34.29 390.06 -7.26 -41.55 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.00 Total: 2.79 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.80 Total: -2.22 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.36 Total: -34.92 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.70 Total: -27.88 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.29 -7.26 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266103178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.191 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds