Wall clock time and date at job start Tue Mar 31 2020 22:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 N 1.46501 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.36884 * 119.99829 * 283.33645 * 4 3 2 6 6 H 1.08000 * 120.00238 * 314.91244 * 5 4 3 7 7 C 1.39042 * 120.00232 * 134.91380 * 5 4 3 8 8 N 1.31369 * 119.99845 * 338.85187 * 7 5 4 9 9 Si 1.86802 * 120.00059 * 158.84385 * 7 5 4 10 10 H 1.48503 * 109.46690 * 90.00584 * 9 7 5 11 11 H 1.48504 * 109.47077 * 210.00208 * 9 7 5 12 12 H 1.48496 * 109.47331 * 330.00419 * 9 7 5 13 13 C 1.34783 * 120.00223 * 103.33288 * 4 3 2 14 14 O 1.21595 * 120.00148 * 186.50568 * 13 4 3 15 15 C 1.47609 * 119.99675 * 6.50746 * 13 4 3 16 16 C 1.39740 * 120.12633 * 323.95559 * 15 13 4 17 17 C 1.37799 * 119.86949 * 179.97438 * 16 15 13 18 18 C 1.38684 * 120.12810 * 0.02562 * 17 16 15 19 19 F 1.35108 * 119.87166 * 179.97438 * 18 17 16 20 20 C 1.38648 * 120.25613 * 359.97438 * 18 17 16 21 21 C 1.50698 * 119.94102 * 179.97438 * 20 18 17 22 22 O 1.42900 * 109.47061 * 180.02562 * 21 20 18 23 23 C 1.42898 * 113.99985 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47281 * 180.02562 * 23 22 21 25 25 O 1.42899 * 109.47300 * 64.99821 * 24 23 22 26 26 C 1.42902 * 114.00136 * 180.02562 * 25 24 23 27 27 C 1.37844 * 120.11698 * 0.25688 * 20 18 17 28 28 H 1.08994 * 109.47200 * 300.00292 * 1 2 3 29 29 H 1.08998 * 109.46738 * 60.00122 * 1 2 3 30 30 H 1.09002 * 109.47148 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47353 * 239.99480 * 2 1 3 32 32 H 1.09009 * 109.47035 * 119.99535 * 2 1 3 33 33 H 1.08994 * 109.47298 * 59.99767 * 3 2 1 34 34 H 1.08999 * 109.46723 * 299.99836 * 3 2 1 35 35 H 0.97006 * 120.00063 * 185.04235 * 8 7 5 36 36 H 1.08001 * 120.06154 * 359.97438 * 16 15 13 37 37 H 1.08007 * 119.93319 * 179.97438 * 17 16 15 38 38 H 1.09000 * 109.46952 * 60.00271 * 21 20 18 39 39 H 1.09000 * 109.46929 * 299.99789 * 21 20 18 40 40 H 1.09007 * 109.47227 * 299.99739 * 23 22 21 41 41 H 1.08996 * 109.47153 * 60.00265 * 23 22 21 42 42 H 1.08997 * 109.47711 * 185.00255 * 24 23 22 43 43 H 1.09004 * 109.47185 * 304.99903 * 24 23 22 44 44 H 1.08998 * 109.46830 * 60.00370 * 26 25 24 45 45 H 1.09004 * 109.46814 * 179.97438 * 26 25 24 46 46 H 1.08990 * 109.47155 * 300.00086 * 26 25 24 47 47 H 1.08008 * 120.05744 * 179.71871 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.1692 1.1544 6 1 3.8867 1.6298 2.0834 7 6 5.2728 0.2986 1.1306 8 7 5.3985 -0.5671 0.1506 9 14 6.5504 0.3602 2.4921 10 1 6.1521 -0.5610 3.5866 11 1 7.8700 -0.0544 1.9517 12 1 6.6446 1.7449 3.0202 13 6 4.1795 1.7115 -1.1349 14 8 5.3896 1.5962 -1.1652 15 6 3.4490 2.1461 -2.3417 16 6 2.1885 1.6152 -2.6278 17 6 1.5110 2.0251 -3.7556 18 6 2.0782 2.9622 -4.6062 19 9 1.4096 3.3601 -5.7108 20 6 3.3286 3.4924 -4.3274 21 6 3.9384 4.5098 -5.2569 22 8 5.2196 4.9015 -4.7598 23 6 5.8870 5.8696 -5.5719 24 6 7.2412 6.2124 -4.9478 25 8 8.0817 5.0570 -4.9691 26 6 9.3775 5.2703 -4.4055 27 6 4.0174 3.0862 -3.2047 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 6.1131 -1.2228 0.1713 36 1 1.7461 0.8851 -1.9663 37 1 0.5368 1.6152 -3.9779 38 1 3.2888 5.3830 -5.3163 39 1 4.0521 4.0732 -6.2492 40 1 6.0407 5.4618 -6.5710 41 1 5.2779 6.7711 -5.6370 42 1 7.7112 7.0142 -5.5172 43 1 7.0948 6.5362 -3.9173 44 1 9.2750 5.5743 -3.3638 45 1 9.9536 4.3465 -4.4591 46 1 9.8920 6.0526 -4.9634 47 1 4.9934 3.4964 -2.9909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266103178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:58 Heat of formation + Delta-G solvation = -138.608284 kcal Electronic energy + Delta-G solvation = -30241.498277 eV Core-core repulsion = 25918.658024 eV Total energy + Delta-G solvation = -4322.840253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.95438 -41.23733 -39.69804 -38.93605 -38.02305 -36.94745 -34.67323 -33.30950 -32.96263 -31.57907 -30.96892 -27.90333 -27.25577 -26.77498 -26.52334 -24.24261 -23.45826 -22.98267 -22.28977 -21.22440 -18.89065 -18.75937 -18.05054 -17.80732 -17.68675 -17.16093 -16.91935 -16.79771 -16.48274 -16.26093 -16.13455 -15.99027 -15.72029 -15.26604 -15.21709 -14.86866 -14.58777 -14.19262 -13.97973 -13.87236 -13.63940 -13.51601 -13.23813 -13.03725 -12.92267 -12.80508 -12.74335 -12.61044 -12.44757 -12.29723 -12.12681 -12.00439 -11.98809 -11.75038 -11.47688 -10.81135 -10.79411 -10.65730 -10.17419 -9.91959 -9.52618 -9.14682 -8.22893 -5.98788 -0.14952 0.19507 1.35117 1.43838 1.50804 2.11219 2.34549 2.52286 2.81009 2.85355 3.03750 3.17103 3.24833 3.62335 3.82956 3.98925 4.04392 4.12449 4.19783 4.20466 4.26545 4.33850 4.37627 4.39254 4.42479 4.46473 4.53692 4.56564 4.61339 4.69740 4.76202 4.81591 4.83450 4.85216 4.96558 5.02540 5.10877 5.19910 5.29203 5.38924 5.40701 5.47875 5.66692 5.81225 6.14060 6.20161 6.28887 6.99194 7.17280 7.62140 8.29262 8.85674 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008313 B = 0.004354 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.229809 B = 6429.984578 C = 9427.961674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.079 3.921 4 N -0.452 5.452 5 C -0.369 4.369 6 H 0.084 0.916 7 C 0.028 3.972 8 N -0.860 5.860 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.268 1.268 13 C 0.491 3.509 14 O -0.587 6.587 15 C -0.131 4.131 16 C -0.090 4.090 17 C -0.140 4.140 18 C 0.110 3.890 19 F -0.129 7.129 20 C -0.130 4.130 21 C 0.111 3.889 22 O -0.405 6.405 23 C 0.057 3.943 24 C 0.055 3.945 25 O -0.419 6.419 26 C 0.027 3.973 27 C -0.043 4.043 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.260 0.740 36 H 0.163 0.837 37 H 0.179 0.821 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.038 0.962 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 11.950 -11.760 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.044 4.044 4 N -0.172 5.172 5 C -0.497 4.497 6 H 0.101 0.899 7 C -0.180 4.180 8 N -0.494 5.494 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.192 1.192 13 C 0.280 3.720 14 O -0.470 6.470 15 C -0.134 4.134 16 C -0.109 4.109 17 C -0.158 4.158 18 C 0.090 3.910 19 F -0.108 7.108 20 C -0.131 4.131 21 C 0.035 3.965 22 O -0.325 6.325 23 C -0.018 4.018 24 C -0.021 4.021 25 O -0.338 6.338 26 C -0.069 4.069 27 C -0.063 4.063 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.180 0.820 37 H 0.196 0.804 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.941 11.555 -11.787 17.906 hybrid contribution 1.254 -0.084 0.645 1.413 sum -5.686 11.471 -11.142 16.972 Atomic orbital electron populations 1.21714 0.92471 1.02554 1.02996 1.21731 0.97294 0.96472 1.01009 1.22430 0.81313 0.97568 1.03046 1.43396 1.05003 1.60627 1.08139 1.19244 1.14342 1.27787 0.88297 0.89859 1.26087 1.00026 0.93347 0.98538 1.69939 1.31082 1.14956 1.33383 0.85357 0.77989 0.78861 0.78540 1.18433 1.22102 1.19229 1.18589 0.87038 0.81609 0.84722 1.90582 1.16354 1.55791 1.84292 1.20402 0.96491 0.99875 0.96658 1.21978 0.92527 0.99334 0.97022 1.21294 1.02763 0.98079 0.93697 1.17446 0.90365 0.97766 0.85423 1.91491 1.79594 1.89515 1.50183 1.19728 0.94414 1.01326 0.97668 1.21145 0.84653 0.95910 0.94780 1.87986 1.31719 1.61833 1.50989 1.22801 0.91953 0.92690 0.94380 1.22797 0.89826 0.88418 1.01078 1.87938 1.26577 1.36727 1.82594 1.22867 0.83678 1.02911 0.97449 1.20674 0.98852 0.94582 0.92157 0.91786 0.90807 0.91867 0.93791 0.93724 0.91635 0.88050 0.93098 0.82046 0.80383 0.89179 0.90437 0.91647 0.88507 0.88450 0.93230 0.94347 0.89774 0.91547 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.90 71.98 0.71 -2.64 16 2 C -0.13 -4.52 5.23 30.59 0.16 -4.36 16 3 C 0.08 3.07 4.86 86.38 0.42 3.49 16 4 N -0.45 -23.58 2.53 -639.08 -1.62 -25.20 16 5 C -0.37 -21.01 9.03 84.10 0.76 -20.25 16 6 H 0.08 4.52 7.92 -2.91 -0.02 4.49 16 7 C 0.03 1.63 4.29 84.95 0.36 1.99 16 8 N -0.86 -53.74 11.82 21.68 0.26 -53.48 16 9 Si 0.97 46.77 29.61 68.60 2.03 48.80 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.49 27.16 6.83 86.72 0.59 27.75 16 14 O -0.59 -38.51 14.45 -4.01 -0.06 -38.57 16 15 C -0.13 -5.73 5.45 -20.09 -0.11 -5.84 16 16 C -0.09 -3.08 7.37 22.53 0.17 -2.92 16 17 C -0.14 -3.70 10.01 22.27 0.22 -3.48 16 18 C 0.11 3.03 7.25 22.47 0.16 3.19 16 19 F -0.13 -3.09 16.79 44.97 0.76 -2.33 16 20 C -0.13 -4.16 5.88 -19.86 -0.12 -4.28 16 21 C 0.11 2.85 5.90 71.24 0.42 3.27 16 22 O -0.41 -12.27 8.78 -144.34 -1.27 -13.54 16 23 C 0.06 1.20 6.32 71.98 0.45 1.66 16 24 C 0.05 1.20 6.32 71.98 0.45 1.65 16 25 O -0.42 -12.29 10.67 -144.34 -1.54 -13.83 16 26 C 0.03 0.61 11.01 113.37 1.25 1.86 16 27 C -0.04 -1.78 8.94 22.53 0.20 -1.58 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.71 6.98 -2.39 -0.02 1.69 16 32 H 0.04 1.86 8.07 -2.38 -0.02 1.84 16 33 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 34 H 0.10 3.45 4.01 -2.39 -0.01 3.44 16 35 H 0.26 15.65 8.32 -92.70 -0.77 14.88 16 36 H 0.16 5.30 3.38 -2.91 -0.01 5.29 16 37 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.12 5.45 6.95 -2.91 -0.02 5.43 16 Total: -1.00 -81.76 390.06 5.65 -76.12 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.98 Total: 22.51 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 6.11 Total: -0.48 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.36 Total: -78.68 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -2.86 Total: -65.94 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.76 Total: -2.33 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -81.76 5.65 -76.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266103178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.492 kcal (2) G-P(sol) polarization free energy of solvation -81.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds