Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 C 1.52999 * 109.47385 * 239.99682 * 2 1 3 5 5 O 1.45206 * 109.46940 * 119.99650 * 2 1 3 6 6 C 1.34634 * 116.99978 * 60.00121 * 5 2 1 7 7 O 1.21510 * 119.99848 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99974 * 180.02562 * 6 5 2 9 9 C 1.47145 * 120.98646 * 359.97095 * 8 6 5 10 10 C 1.53292 * 108.39010 * 230.56047 * 9 8 6 11 11 O 1.42952 * 109.26504 * 307.72133 * 10 9 8 12 12 C 1.42960 * 114.17024 * 62.49999 * 11 10 9 13 13 H 1.08999 * 109.51645 * 57.44371 * 12 11 10 14 14 C 1.50701 * 109.51404 * 177.55264 * 12 11 10 15 15 O 1.21291 * 120.00071 * 14.50126 * 14 12 11 16 16 N 1.34779 * 119.99793 * 194.50035 * 14 12 11 17 17 C 1.37100 * 119.99613 * 185.08073 * 16 14 12 18 18 H 1.07997 * 120.00454 * 29.42433 * 17 16 14 19 19 C 1.38946 * 119.99880 * 209.42565 * 17 16 14 20 20 N 1.31418 * 120.00141 * 39.96364 * 19 17 16 21 21 Si 1.86796 * 120.00185 * 219.96712 * 19 17 16 22 22 H 1.48503 * 109.47073 * 269.99793 * 21 19 17 23 23 H 1.48494 * 109.47114 * 29.99725 * 21 19 17 24 24 H 1.48509 * 109.47356 * 150.00315 * 21 19 17 25 25 C 1.46498 * 120.00434 * 5.07548 * 16 14 12 26 26 C 1.47201 * 109.47431 * 265.51291 * 25 16 14 27 27 N 6.08598 * 73.88049 * 177.60593 * 2 1 3 28 28 C 1.47160 * 120.97960 * 180.02562 * 8 6 5 29 29 H 1.08995 * 109.47624 * 300.00486 * 1 2 3 30 30 H 1.09005 * 109.46722 * 60.00407 * 1 2 3 31 31 H 1.08996 * 109.46870 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46959 * 299.99447 * 3 2 1 34 34 H 1.08998 * 109.47343 * 60.00033 * 3 2 1 35 35 H 1.09005 * 109.47170 * 299.99903 * 4 2 1 36 36 H 1.08998 * 109.46908 * 60.00415 * 4 2 1 37 37 H 1.09007 * 109.47101 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.68249 * 350.28991 * 9 8 6 39 39 H 1.09001 * 109.68106 * 110.83184 * 9 8 6 40 40 H 1.09002 * 109.50914 * 67.62353 * 10 9 8 41 41 H 1.09003 * 109.51211 * 187.72304 * 10 9 8 42 42 H 0.97007 * 119.99205 * 5.88472 * 20 19 17 43 43 H 1.09004 * 109.46815 * 25.51340 * 25 16 14 44 44 H 1.08993 * 109.47203 * 145.50528 * 25 16 14 45 45 H 1.08992 * 109.68128 * 9.72008 * 28 8 6 46 46 H 1.08999 * 109.71231 * 249.18046 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3385 7 8 0.9509 -2.5094 0.5042 8 7 2.0671 -2.6653 2.4173 9 6 2.9165 -2.0362 3.4411 10 6 4.1244 -2.9458 3.6929 11 8 3.6667 -4.2705 3.9743 12 6 2.9527 -4.8840 2.8985 13 1 3.5829 -4.9072 2.0095 14 6 2.5733 -6.2908 3.2835 15 8 2.6423 -6.6418 4.4425 16 7 2.1575 -7.1588 2.3400 17 6 1.7136 -8.4043 2.7024 18 1 1.2491 -8.5529 3.6659 19 6 1.8615 -9.4755 1.8299 20 7 2.9647 -9.6032 1.1272 21 14 0.4923 -10.7342 1.6557 22 1 0.6974 -11.8279 2.6391 23 1 -0.8165 -10.0800 1.9087 24 1 0.5078 -11.2955 0.2809 25 6 2.1797 -6.7714 0.9274 26 6 0.8596 -6.2467 0.5416 27 7 -0.1597 -5.8416 0.2442 28 6 1.6851 -4.0739 2.6057 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 3.2571 -1.0629 3.0881 39 1 2.3497 -1.9146 4.3642 40 1 4.7594 -2.9612 2.8071 41 1 4.6936 -2.5683 4.5425 42 1 3.7090 -8.9999 1.2791 43 1 2.9358 -6.0014 0.7736 44 1 2.4178 -7.6415 0.3157 45 1 1.2104 -4.4498 1.6994 46 1 0.9939 -4.1584 3.4442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268826968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = -100.285735 kcal Electronic energy + Delta-G solvation = -31592.363884 eV Core-core repulsion = 27291.105382 eV Total energy + Delta-G solvation = -4301.258501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.06009 -39.82950 -38.31819 -37.06381 -36.16022 -35.00997 -34.71611 -33.93617 -32.35449 -31.21852 -28.17874 -27.66844 -27.62610 -27.54827 -25.52988 -24.00971 -23.11741 -21.34590 -19.77082 -19.43111 -18.33650 -18.11463 -17.10064 -16.88784 -16.74353 -16.29235 -16.05101 -15.50563 -15.20810 -14.81961 -14.68793 -14.54680 -14.06675 -13.92027 -13.76965 -13.69003 -13.55357 -13.37619 -12.77156 -12.65090 -12.46274 -12.38245 -12.20526 -12.09301 -12.02324 -11.84123 -11.63164 -11.58718 -11.48154 -11.43883 -11.16605 -10.92689 -10.68625 -10.52897 -10.31497 -10.24462 -10.16947 -10.02280 -9.15249 -8.80726 -8.55564 -8.15223 -6.93000 -4.11111 1.91860 2.75546 3.04807 3.16593 3.31723 3.34041 3.41034 3.51368 3.61083 3.66222 4.18658 4.43687 4.50794 4.54886 4.57415 4.66309 4.69800 4.82643 4.93385 4.96399 5.01533 5.19399 5.21837 5.25121 5.27764 5.32263 5.47340 5.48356 5.53410 5.57719 5.63563 5.65684 5.67042 5.75652 5.87329 6.07054 6.10168 6.13376 6.23589 6.32702 7.05397 7.22763 7.61948 7.94723 8.09574 8.24630 8.30808 8.66820 9.08080 9.53105 10.31526 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.003700 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.148869 B = 7564.807915 C = 8761.191045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.652 3.348 7 O -0.555 6.555 8 N -0.598 5.598 9 C 0.076 3.924 10 C 0.045 3.955 11 O -0.345 6.345 12 C 0.065 3.935 13 H 0.078 0.922 14 C 0.463 3.537 15 O -0.535 6.535 16 N -0.435 5.435 17 C -0.421 4.421 18 H 0.096 0.904 19 C 0.026 3.974 20 N -0.843 5.843 21 Si 1.056 2.944 22 H -0.280 1.280 23 H -0.281 1.281 24 H -0.277 1.277 25 C 0.177 3.823 26 C 0.196 3.804 27 N -0.426 5.426 28 C 0.099 3.901 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.111 0.889 42 H 0.280 0.720 43 H 0.100 0.900 44 H 0.133 0.867 45 H 0.112 0.888 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 19.377 -3.557 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.406 3.594 7 O -0.443 6.443 8 N -0.340 5.340 9 C -0.047 4.047 10 C -0.034 4.034 11 O -0.262 6.262 12 C 0.002 3.998 13 H 0.095 0.905 14 C 0.250 3.750 15 O -0.413 6.413 16 N -0.158 5.158 17 C -0.546 4.546 18 H 0.114 0.886 19 C -0.185 4.185 20 N -0.475 5.475 21 Si 0.880 3.120 22 H -0.206 1.206 23 H -0.206 1.206 24 H -0.202 1.202 25 C 0.049 3.951 26 C -0.122 4.122 27 N -0.105 5.105 28 C -0.023 4.023 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.150 0.850 45 H 0.130 0.870 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.881 18.253 -4.374 18.790 hybrid contribution 0.862 1.487 0.621 1.828 sum 1.743 19.739 -3.753 20.168 Atomic orbital electron populations 1.22518 0.93987 1.05309 1.02309 1.22069 0.94423 0.91417 0.82189 1.21849 1.02162 0.92556 1.03041 1.22520 1.01476 1.03731 0.96380 1.86261 1.71615 1.23566 1.46423 1.17934 0.78979 0.80620 0.81824 1.90967 1.40531 1.70112 1.42658 1.46964 1.53417 1.12000 1.21572 1.22480 0.92613 0.97511 0.92071 1.23045 0.94698 0.83236 1.02376 1.88139 1.72942 1.27491 1.37617 1.22457 0.93101 0.93314 0.90924 0.90454 1.19537 0.82939 0.85355 0.87131 1.90592 1.54548 1.77821 1.18371 1.43419 1.56704 1.13480 1.02207 1.20189 1.42198 0.84293 1.07956 0.88593 1.26332 0.99563 0.98275 0.94376 1.70804 1.01422 1.33659 1.41573 0.83745 0.75452 0.75413 0.77347 1.20647 1.20611 1.20190 1.19253 0.86258 1.01792 0.87793 1.29929 0.95915 0.92921 0.93467 1.81115 1.11369 1.09667 1.08329 1.22445 0.97096 0.77864 1.04872 0.92282 0.91189 0.89207 0.91503 0.90181 0.91550 0.89233 0.91176 0.92188 0.88106 0.90188 0.92555 0.87085 0.90886 0.88229 0.84981 0.87044 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 2 C 0.14 1.45 1.13 -90.62 -0.10 1.34 16 3 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16 4 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 5 O -0.36 -4.61 8.58 -40.31 -0.35 -4.96 16 6 C 0.65 9.95 7.75 54.05 0.42 10.37 16 7 O -0.55 -9.85 11.35 -19.28 -0.22 -10.07 16 8 N -0.60 -8.84 3.02 -178.09 -0.54 -9.38 16 9 C 0.08 0.87 6.65 -3.54 -0.02 0.84 16 10 C 0.04 0.52 6.98 37.31 0.26 0.78 16 11 O -0.34 -6.01 9.96 -54.68 -0.54 -6.55 16 12 C 0.06 1.17 2.42 -27.75 -0.07 1.10 16 13 H 0.08 1.25 6.44 -51.93 -0.33 0.91 16 14 C 0.46 10.65 6.92 -10.98 -0.08 10.57 16 15 O -0.53 -14.48 16.38 -13.90 -0.23 -14.71 16 16 N -0.44 -10.04 2.41 -117.94 -0.28 -10.33 16 17 C -0.42 -10.91 8.76 -14.93 -0.13 -11.04 16 18 H 0.10 2.70 7.80 -52.49 -0.41 2.29 16 19 C 0.03 0.63 4.54 -17.47 -0.08 0.56 16 20 N -0.84 -21.08 12.18 55.50 0.68 -20.40 16 21 Si 1.06 22.58 30.05 -169.99 -5.11 17.47 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 C 0.18 3.43 5.01 -6.83 -0.03 3.39 16 26 C 0.20 4.01 13.01 -20.75 -0.27 3.74 16 27 N -0.43 -9.25 18.33 42.17 0.77 -8.47 16 28 C 0.10 1.73 5.76 -3.55 -0.02 1.71 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.94 7.01 -51.93 -0.36 0.57 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.28 6.94 8.03 -40.82 -0.33 6.61 16 43 H 0.10 1.57 5.94 -51.93 -0.31 1.27 16 44 H 0.13 2.67 5.63 -51.93 -0.29 2.37 16 45 H 0.11 2.10 3.53 -51.93 -0.18 1.92 16 46 H 0.08 1.56 8.13 -51.93 -0.42 1.13 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -32.24 373.83 -5.64 -37.88 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.28 Total: 4.60 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 0.83 Total: 19.29 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.63 Total: -48.58 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.34 Total: -36.29 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.11 Total: 17.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.24 -5.64 -37.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268826968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.409 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds