Wall clock time and date at job start Tue Mar 31 2020 22:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 C 1.52999 * 109.47385 * 239.99682 * 2 1 3 5 5 O 1.45206 * 109.46940 * 119.99650 * 2 1 3 6 6 C 1.34634 * 116.99978 * 60.00121 * 5 2 1 7 7 O 1.21510 * 119.99848 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99974 * 180.02562 * 6 5 2 9 9 C 1.47145 * 120.98646 * 359.97095 * 8 6 5 10 10 C 1.53292 * 108.39010 * 230.56047 * 9 8 6 11 11 O 1.42952 * 109.26504 * 307.72133 * 10 9 8 12 12 C 1.42960 * 114.17024 * 62.49999 * 11 10 9 13 13 H 1.08999 * 109.51645 * 57.44371 * 12 11 10 14 14 C 1.50701 * 109.51404 * 177.55264 * 12 11 10 15 15 O 1.21291 * 120.00071 * 14.50126 * 14 12 11 16 16 N 1.34779 * 119.99793 * 194.50035 * 14 12 11 17 17 C 1.37100 * 119.99613 * 185.08073 * 16 14 12 18 18 H 1.07997 * 120.00454 * 29.42433 * 17 16 14 19 19 C 1.38946 * 119.99880 * 209.42565 * 17 16 14 20 20 N 1.31418 * 120.00141 * 39.96364 * 19 17 16 21 21 Si 1.86796 * 120.00185 * 219.96712 * 19 17 16 22 22 H 1.48503 * 109.47073 * 269.99793 * 21 19 17 23 23 H 1.48494 * 109.47114 * 29.99725 * 21 19 17 24 24 H 1.48509 * 109.47356 * 150.00315 * 21 19 17 25 25 C 1.46498 * 120.00434 * 5.07548 * 16 14 12 26 26 C 1.47201 * 109.47431 * 265.51291 * 25 16 14 27 27 N 6.08598 * 73.88049 * 177.60593 * 2 1 3 28 28 C 1.47160 * 120.97960 * 180.02562 * 8 6 5 29 29 H 1.08995 * 109.47624 * 300.00486 * 1 2 3 30 30 H 1.09005 * 109.46722 * 60.00407 * 1 2 3 31 31 H 1.08996 * 109.46870 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46959 * 299.99447 * 3 2 1 34 34 H 1.08998 * 109.47343 * 60.00033 * 3 2 1 35 35 H 1.09005 * 109.47170 * 299.99903 * 4 2 1 36 36 H 1.08998 * 109.46908 * 60.00415 * 4 2 1 37 37 H 1.09007 * 109.47101 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.68249 * 350.28991 * 9 8 6 39 39 H 1.09001 * 109.68106 * 110.83184 * 9 8 6 40 40 H 1.09002 * 109.50914 * 67.62353 * 10 9 8 41 41 H 1.09003 * 109.51211 * 187.72304 * 10 9 8 42 42 H 0.97007 * 119.99205 * 5.88472 * 20 19 17 43 43 H 1.09004 * 109.46815 * 25.51340 * 25 16 14 44 44 H 1.08993 * 109.47203 * 145.50528 * 25 16 14 45 45 H 1.08992 * 109.68128 * 9.72008 * 28 8 6 46 46 H 1.08999 * 109.71231 * 249.18046 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3385 7 8 0.9509 -2.5094 0.5042 8 7 2.0671 -2.6653 2.4173 9 6 2.9165 -2.0362 3.4411 10 6 4.1244 -2.9458 3.6929 11 8 3.6667 -4.2705 3.9743 12 6 2.9527 -4.8840 2.8985 13 1 3.5829 -4.9072 2.0095 14 6 2.5733 -6.2908 3.2835 15 8 2.6423 -6.6418 4.4425 16 7 2.1575 -7.1588 2.3400 17 6 1.7136 -8.4043 2.7024 18 1 1.2491 -8.5529 3.6659 19 6 1.8615 -9.4755 1.8299 20 7 2.9647 -9.6032 1.1272 21 14 0.4923 -10.7342 1.6557 22 1 0.6974 -11.8279 2.6391 23 1 -0.8165 -10.0800 1.9087 24 1 0.5078 -11.2955 0.2809 25 6 2.1797 -6.7714 0.9274 26 6 0.8596 -6.2467 0.5416 27 7 -0.1597 -5.8416 0.2442 28 6 1.6851 -4.0739 2.6057 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 3.2571 -1.0629 3.0881 39 1 2.3497 -1.9146 4.3642 40 1 4.7594 -2.9612 2.8071 41 1 4.6936 -2.5683 4.5425 42 1 3.7090 -8.9999 1.2791 43 1 2.9358 -6.0014 0.7736 44 1 2.4178 -7.6415 0.3157 45 1 1.2104 -4.4498 1.6994 46 1 0.9939 -4.1584 3.4442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268826968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:22 Heat of formation + Delta-G solvation = -120.896820 kcal Electronic energy + Delta-G solvation = -31593.257647 eV Core-core repulsion = 27291.105382 eV Total energy + Delta-G solvation = -4302.152265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.21458 -41.27310 -39.75913 -38.25082 -37.84223 -36.62620 -36.13107 -34.87460 -34.11432 -32.60422 -29.51650 -29.25449 -28.39231 -28.29623 -27.12398 -25.52413 -24.24671 -22.45776 -21.41520 -20.49015 -20.15554 -19.29621 -18.70440 -18.32683 -17.98004 -17.45194 -17.35300 -16.75206 -16.48684 -16.36417 -15.76207 -15.68428 -15.61194 -15.35793 -15.34329 -15.04448 -14.78615 -14.54926 -14.14366 -14.05167 -13.75049 -13.58243 -13.34079 -13.15228 -13.14424 -12.97301 -12.90979 -12.87641 -12.76370 -12.53509 -12.47180 -12.35802 -12.12052 -11.96262 -11.89941 -11.43979 -11.38912 -11.13471 -11.01877 -10.50077 -10.07808 -9.88738 -8.92082 -6.11642 0.79807 1.35842 1.41179 1.57765 1.60144 1.68064 1.75965 1.82535 2.15233 2.48918 2.61333 2.67848 3.04618 3.16305 3.41241 3.53444 3.58588 3.72940 3.77549 3.86086 3.92874 3.96010 4.12688 4.13622 4.23186 4.37235 4.47144 4.47963 4.59318 4.64331 4.74775 4.76173 4.79862 4.83262 4.87898 4.99190 5.15490 5.26508 5.32407 5.39039 5.63089 5.88570 5.95189 6.11234 6.39321 6.46962 6.76545 7.11470 7.15373 7.67196 8.32958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.003700 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.148869 B = 7564.807915 C = 8761.191045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.355 6.355 6 C 0.651 3.349 7 O -0.583 6.583 8 N -0.598 5.598 9 C 0.076 3.924 10 C 0.039 3.961 11 O -0.373 6.373 12 C 0.082 3.918 13 H 0.103 0.897 14 C 0.456 3.544 15 O -0.586 6.586 16 N -0.443 5.443 17 C -0.449 4.449 18 H 0.062 0.938 19 C 0.006 3.994 20 N -0.846 5.846 21 Si 1.093 2.907 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.265 1.265 25 C 0.183 3.817 26 C 0.209 3.791 27 N -0.448 5.448 28 C 0.109 3.891 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.144 0.856 42 H 0.277 0.723 43 H 0.140 0.860 44 H 0.130 0.870 45 H 0.097 0.903 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 21.794 -4.735 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.089 3.911 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.270 6.270 6 C 0.406 3.594 7 O -0.473 6.473 8 N -0.340 5.340 9 C -0.046 4.046 10 C -0.037 4.037 11 O -0.291 6.291 12 C 0.019 3.981 13 H 0.120 0.880 14 C 0.245 3.755 15 O -0.469 6.469 16 N -0.164 5.164 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.203 4.203 20 N -0.477 5.477 21 Si 0.914 3.086 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.189 1.189 25 C 0.056 3.944 26 C -0.109 4.109 27 N -0.127 5.127 28 C -0.015 4.015 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.162 0.838 42 H 0.087 0.913 43 H 0.157 0.843 44 H 0.147 0.853 45 H 0.115 0.885 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.117 20.712 -5.573 21.553 hybrid contribution 0.515 0.842 1.006 1.409 sum 2.632 21.554 -4.567 22.189 Atomic orbital electron populations 1.22479 0.94557 1.03221 1.03606 1.22467 0.94225 0.93014 0.81396 1.21868 1.02700 0.89892 1.04401 1.22477 1.01922 1.01932 0.97441 1.86280 1.71306 1.21944 1.47458 1.18045 0.78565 0.81337 0.81438 1.90972 1.41694 1.70915 1.43739 1.46944 1.53783 1.10933 1.22312 1.22718 0.92003 0.98365 0.91478 1.23435 0.95063 0.80573 1.04661 1.88109 1.72930 1.30309 1.37736 1.22123 0.93847 0.90278 0.91826 0.87989 1.20383 0.81508 0.87230 0.86340 1.90546 1.56503 1.79315 1.20488 1.43508 1.56299 1.12894 1.03749 1.20023 1.43643 0.86237 1.07544 0.91998 1.27265 1.00455 0.99113 0.93496 1.70873 1.01465 1.33700 1.41651 0.83232 0.73136 0.74102 0.78082 1.19572 1.21082 1.18903 1.19426 0.86705 1.02774 0.85449 1.30015 0.95820 0.92254 0.92844 1.81117 1.11990 1.10595 1.09036 1.22070 0.96321 0.79768 1.03320 0.91895 0.89020 0.92864 0.90643 0.88027 0.91003 0.92663 0.89127 0.91363 0.85254 0.89799 0.90933 0.83848 0.91289 0.84310 0.85289 0.88471 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.37 71.98 0.60 -3.15 16 2 C 0.13 2.38 1.13 -10.79 -0.01 2.37 16 3 C -0.13 -1.46 8.85 71.98 0.64 -0.82 16 4 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 5 O -0.36 -8.23 8.58 -55.44 -0.48 -8.71 16 6 C 0.65 19.19 7.75 129.79 1.01 20.20 16 7 O -0.58 -20.82 11.35 19.81 0.22 -20.59 16 8 N -0.60 -16.94 3.02 -947.78 -2.86 -19.80 16 9 C 0.08 1.53 6.65 86.35 0.57 2.10 16 10 C 0.04 0.81 6.98 72.08 0.50 1.31 16 11 O -0.37 -12.57 9.96 -130.39 -1.30 -13.87 16 12 C 0.08 2.91 2.42 29.94 0.07 2.99 16 13 H 0.10 3.09 6.44 -2.39 -0.02 3.07 16 14 C 0.46 21.47 6.92 87.66 0.61 22.07 16 15 O -0.59 -33.07 16.38 15.53 0.25 -32.82 16 16 N -0.44 -20.84 2.41 -645.42 -1.56 -22.40 16 17 C -0.45 -24.02 8.76 84.04 0.74 -23.28 16 18 H 0.06 3.69 7.80 -2.91 -0.02 3.66 16 19 C 0.01 0.30 4.54 84.92 0.39 0.68 16 20 N -0.85 -42.07 12.18 21.66 0.26 -41.81 16 21 Si 1.09 45.65 30.05 68.60 2.06 47.71 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 25 C 0.18 7.05 5.01 84.57 0.42 7.47 16 26 C 0.21 8.57 13.01 89.44 1.16 9.73 16 27 N -0.45 -19.67 18.33 20.01 0.37 -19.30 16 28 C 0.11 3.80 5.76 86.34 0.50 4.29 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.52 5.88 -2.39 -0.01 1.51 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.05 1.50 5.88 -2.38 -0.01 1.49 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.13 1.90 7.01 -2.39 -0.02 1.89 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.28 13.69 8.03 -92.70 -0.74 12.94 16 43 H 0.14 4.17 5.94 -2.38 -0.01 4.16 16 44 H 0.13 5.14 5.63 -2.39 -0.01 5.13 16 45 H 0.10 3.70 3.53 -2.39 -0.01 3.69 16 46 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 Total: -1.00 -73.39 373.83 5.82 -67.57 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 1.04 Total: 20.98 kcal Atomic # 6 Polarization: 35.24 SS G_CDS: 7.80 Total: 43.04 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.79 Total: -103.31 kcal Atomic # 8 Polarization: -74.69 SS G_CDS: -1.30 Total: -75.99 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.06 Total: 47.71 kcal Total: -73.39 5.82 -67.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268826968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.327 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds