Wall clock time and date at job start Tue Mar 31 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47290 * 2 1 4 4 C 1.53007 * 109.46913 * 240.00282 * 2 1 3 5 5 O 1.45196 * 109.47120 * 120.00565 * 2 1 3 6 6 C 1.34635 * 117.00429 * 59.99912 * 5 2 1 7 7 O 1.21509 * 119.99716 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00306 * 180.02562 * 6 5 2 9 9 C 1.47153 * 120.98026 * 0.02562 * 8 6 5 10 10 C 1.53298 * 108.38326 * 129.44539 * 9 8 6 11 11 O 1.42956 * 109.26503 * 52.27936 * 10 9 8 12 12 C 1.42960 * 114.17155 * 297.50086 * 11 10 9 13 13 H 1.09004 * 109.51319 * 302.55199 * 12 11 10 14 14 C 1.50700 * 109.51460 * 182.44674 * 12 11 10 15 15 O 1.21289 * 119.99893 * 344.16921 * 14 12 11 16 16 N 1.34779 * 119.99854 * 164.16525 * 14 12 11 17 17 C 1.37097 * 119.99911 * 184.24009 * 16 14 12 18 18 H 1.08001 * 120.00069 * 324.87882 * 17 16 14 19 19 C 1.38947 * 120.00105 * 144.88126 * 17 16 14 20 20 N 1.31419 * 119.99988 * 332.22065 * 19 17 16 21 21 Si 1.86802 * 120.00156 * 152.21781 * 19 17 16 22 22 H 1.48499 * 109.46945 * 90.00472 * 21 19 17 23 23 H 1.48493 * 109.46868 * 330.00031 * 21 19 17 24 24 H 1.48507 * 109.46889 * 210.00081 * 21 19 17 25 25 C 1.46502 * 119.99957 * 4.24518 * 16 14 12 26 26 C 1.47199 * 109.47397 * 92.57094 * 25 16 14 27 27 N 6.31860 * 73.98319 * 176.30629 * 2 1 3 28 28 C 1.47156 * 120.98552 * 179.97438 * 8 6 5 29 29 H 1.08997 * 109.46905 * 300.00159 * 1 2 3 30 30 H 1.09007 * 109.46849 * 59.99746 * 1 2 3 31 31 H 1.09000 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47330 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47225 * 300.00479 * 3 2 1 34 34 H 1.09001 * 109.46407 * 59.99909 * 3 2 1 35 35 H 1.09000 * 109.47198 * 300.00114 * 4 2 1 36 36 H 1.08997 * 109.47014 * 59.99881 * 4 2 1 37 37 H 1.09000 * 109.47112 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.68694 * 249.16955 * 9 8 6 39 39 H 1.08999 * 109.68266 * 9.72659 * 9 8 6 40 40 H 1.09000 * 109.51523 * 172.22410 * 10 9 8 41 41 H 1.09005 * 109.51425 * 292.32817 * 10 9 8 42 42 H 0.96998 * 119.99626 * 354.12170 * 20 19 17 43 43 H 1.09007 * 109.46711 * 212.57079 * 25 16 14 44 44 H 1.09002 * 109.47207 * 332.56913 * 25 16 14 45 45 H 1.09000 * 109.68072 * 110.82975 * 28 8 6 46 46 H 1.08998 * 109.67504 * 350.28110 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4169 9 6 2.9157 -2.0361 3.4413 10 6 2.2887 -2.2973 4.8156 11 8 2.0466 -3.6983 4.9650 12 6 1.1180 -4.2359 4.0204 13 1 0.1709 -3.7016 4.0964 14 6 0.8956 -5.6981 4.3094 15 8 1.6667 -6.2984 5.0280 16 7 -0.1600 -6.3388 3.7693 17 6 -0.4118 -7.6451 4.1006 18 1 0.4084 -8.3239 4.2824 19 6 -1.7222 -8.0958 4.2024 20 7 -2.6818 -7.2584 4.5262 21 14 -2.1199 -9.8922 3.8792 22 1 -2.0207 -10.6572 5.1481 23 1 -1.1563 -10.4426 2.8925 24 1 -3.4991 -10.0045 3.3400 25 6 -1.0382 -5.6394 2.8281 26 6 -0.5720 -5.8774 1.4524 27 7 -0.2134 -6.0607 0.3913 28 6 1.6844 -4.0738 2.6058 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 3.9158 -2.4683 3.4060 39 1 2.9726 -0.9625 3.2619 40 1 2.9702 -1.9603 5.5967 41 1 1.3467 -1.7545 4.8951 42 1 -2.4657 -6.3466 4.7769 43 1 -2.0569 -6.0122 2.9362 44 1 -1.0183 -4.5701 3.0387 45 1 2.5602 -4.7116 2.4861 46 1 0.9261 -4.3494 1.8729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268826969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:27 Heat of formation + Delta-G solvation = -102.111038 kcal Electronic energy + Delta-G solvation = -31562.092990 eV Core-core repulsion = 27260.755337 eV Total energy + Delta-G solvation = -4301.337653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.08979 -39.87333 -38.36007 -37.09098 -36.20979 -35.04516 -34.77943 -33.95594 -32.33226 -31.17954 -28.21583 -27.69181 -27.63596 -27.55961 -25.54266 -23.99933 -23.14206 -21.36237 -19.87409 -19.45067 -18.28638 -18.13186 -17.16576 -16.93320 -16.77159 -16.31774 -16.02535 -15.52485 -15.22135 -14.78957 -14.70041 -14.55378 -14.05402 -13.95713 -13.79412 -13.69182 -13.59072 -13.46705 -12.77909 -12.65613 -12.48379 -12.39506 -12.24026 -12.10582 -12.00947 -11.84085 -11.64704 -11.61521 -11.50910 -11.46199 -11.21263 -10.90068 -10.73704 -10.54647 -10.27276 -10.20561 -10.13494 -10.05042 -9.19351 -8.85316 -8.61365 -8.10962 -6.82521 -4.22557 1.89300 2.72620 3.05004 3.15970 3.31056 3.33331 3.37151 3.51468 3.59519 3.66279 4.18883 4.48535 4.49581 4.53761 4.55897 4.64233 4.68588 4.81005 4.94272 4.95826 5.01156 5.17771 5.20462 5.23855 5.27715 5.31362 5.46412 5.46715 5.52431 5.56243 5.61922 5.64354 5.65943 5.74758 5.84695 6.07445 6.11241 6.11972 6.21514 6.30343 7.03875 7.19888 7.63799 7.90657 8.08637 8.21612 8.33681 8.59853 9.07700 9.47455 10.41874 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.003599 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.923093 B = 7778.455924 C = 8869.539125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.653 3.347 7 O -0.557 6.557 8 N -0.598 5.598 9 C 0.076 3.924 10 C 0.044 3.956 11 O -0.345 6.345 12 C 0.062 3.938 13 H 0.081 0.919 14 C 0.475 3.525 15 O -0.530 6.530 16 N -0.444 5.444 17 C -0.401 4.401 18 H 0.093 0.907 19 C 0.015 3.985 20 N -0.866 5.866 21 Si 1.071 2.929 22 H -0.281 1.281 23 H -0.282 1.282 24 H -0.277 1.277 25 C 0.172 3.828 26 C 0.200 3.800 27 N -0.432 5.432 28 C 0.100 3.900 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.276 0.724 43 H 0.138 0.862 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 18.219 -5.121 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.408 3.592 7 O -0.445 6.445 8 N -0.339 5.339 9 C -0.047 4.047 10 C -0.034 4.034 11 O -0.262 6.262 12 C 0.000 4.000 13 H 0.098 0.902 14 C 0.262 3.738 15 O -0.407 6.407 16 N -0.167 5.167 17 C -0.528 4.528 18 H 0.111 0.889 19 C -0.193 4.193 20 N -0.500 5.500 21 Si 0.896 3.104 22 H -0.207 1.207 23 H -0.207 1.207 24 H -0.202 1.202 25 C 0.045 3.955 26 C -0.118 4.118 27 N -0.111 5.111 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.155 0.845 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.229 16.342 -6.599 18.384 hybrid contribution 0.993 1.553 0.264 1.862 sum 6.222 17.895 -6.336 19.977 Atomic orbital electron populations 1.22523 0.93885 1.05291 1.02427 1.22081 0.94481 0.91413 0.82152 1.21848 1.02152 0.92527 1.03087 1.22521 1.01457 1.03734 0.96421 1.86260 1.71640 1.23492 1.46411 1.17916 0.78871 0.80548 0.81883 1.90953 1.40807 1.70188 1.42601 1.46960 1.53326 1.12032 1.21617 1.22490 0.94614 0.99619 0.87957 1.23053 1.00698 0.83275 0.96334 1.88140 1.62980 1.21700 1.53363 1.22492 0.93070 0.96129 0.88326 0.90156 1.19696 0.85032 0.86084 0.83010 1.90593 1.44888 1.66957 1.38310 1.43375 1.24940 1.12464 1.35933 1.20327 0.95937 0.84076 1.52425 0.88879 1.26463 0.91534 1.07358 0.93898 1.70803 1.35644 1.07739 1.35864 0.83475 0.76453 0.73047 0.77377 1.20738 1.20740 1.20227 1.19314 0.99628 0.98203 0.78374 1.29890 0.93588 0.93090 0.95266 1.81030 1.08670 1.08584 1.12852 1.22447 1.02795 0.79448 0.97556 0.92142 0.91154 0.89233 0.91541 0.90167 0.91479 0.89241 0.91161 0.92264 0.90158 0.88051 0.87043 0.92470 0.91290 0.84468 0.88319 0.89721 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 2 C 0.14 1.42 1.13 -90.61 -0.10 1.32 16 3 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 4 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 5 O -0.36 -4.55 8.58 -40.31 -0.35 -4.89 16 6 C 0.65 9.84 7.75 54.05 0.42 10.26 16 7 O -0.56 -9.77 11.35 -19.28 -0.22 -9.99 16 8 N -0.60 -8.73 3.02 -178.10 -0.54 -9.26 16 9 C 0.08 0.86 6.65 -3.53 -0.02 0.83 16 10 C 0.04 0.52 6.98 37.31 0.26 0.78 16 11 O -0.34 -5.98 9.97 -54.59 -0.54 -6.52 16 12 C 0.06 1.13 2.36 -27.76 -0.07 1.06 16 13 H 0.08 1.30 6.68 -51.93 -0.35 0.95 16 14 C 0.48 10.92 6.93 -10.98 -0.08 10.84 16 15 O -0.53 -14.27 16.40 -13.81 -0.23 -14.50 16 16 N -0.44 -10.28 2.29 -117.93 -0.27 -10.55 16 17 C -0.40 -10.42 8.86 -14.93 -0.13 -10.56 16 18 H 0.09 2.60 7.73 -52.49 -0.41 2.19 16 19 C 0.02 0.37 4.83 -17.47 -0.08 0.29 16 20 N -0.87 -21.81 12.18 55.50 0.68 -21.14 16 21 Si 1.07 22.71 30.00 -169.99 -5.10 17.61 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 C 0.17 3.38 4.67 -6.83 -0.03 3.35 16 26 C 0.20 4.13 13.10 -20.79 -0.27 3.85 16 27 N -0.43 -9.44 18.51 42.11 0.78 -8.66 16 28 C 0.10 1.71 5.65 -3.56 -0.02 1.69 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 1.25 5.88 -51.93 -0.31 0.95 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.93 7.01 -51.93 -0.36 0.56 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.28 6.79 7.25 -40.82 -0.30 6.50 16 43 H 0.14 2.83 5.38 -51.93 -0.28 2.55 16 44 H 0.10 1.60 5.78 -51.93 -0.30 1.30 16 45 H 0.08 1.54 8.13 -51.93 -0.42 1.12 16 46 H 0.11 2.04 3.54 -51.93 -0.18 1.86 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -32.38 372.84 -5.58 -37.96 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.23 Total: 4.60 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 0.82 Total: 19.73 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.65 Total: -49.61 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.34 Total: -35.90 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.10 Total: 17.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.38 -5.58 -37.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268826969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.151 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds