Wall clock time and date at job start Tue Mar 31 2020 22:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47290 * 2 1 4 4 C 1.53007 * 109.46913 * 240.00282 * 2 1 3 5 5 O 1.45196 * 109.47120 * 120.00565 * 2 1 3 6 6 C 1.34635 * 117.00429 * 59.99912 * 5 2 1 7 7 O 1.21509 * 119.99716 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00306 * 180.02562 * 6 5 2 9 9 C 1.47153 * 120.98026 * 0.02562 * 8 6 5 10 10 C 1.53298 * 108.38326 * 129.44539 * 9 8 6 11 11 O 1.42956 * 109.26503 * 52.27936 * 10 9 8 12 12 C 1.42960 * 114.17155 * 297.50086 * 11 10 9 13 13 H 1.09004 * 109.51319 * 302.55199 * 12 11 10 14 14 C 1.50700 * 109.51460 * 182.44674 * 12 11 10 15 15 O 1.21289 * 119.99893 * 344.16921 * 14 12 11 16 16 N 1.34779 * 119.99854 * 164.16525 * 14 12 11 17 17 C 1.37097 * 119.99911 * 184.24009 * 16 14 12 18 18 H 1.08001 * 120.00069 * 324.87882 * 17 16 14 19 19 C 1.38947 * 120.00105 * 144.88126 * 17 16 14 20 20 N 1.31419 * 119.99988 * 332.22065 * 19 17 16 21 21 Si 1.86802 * 120.00156 * 152.21781 * 19 17 16 22 22 H 1.48499 * 109.46945 * 90.00472 * 21 19 17 23 23 H 1.48493 * 109.46868 * 330.00031 * 21 19 17 24 24 H 1.48507 * 109.46889 * 210.00081 * 21 19 17 25 25 C 1.46502 * 119.99957 * 4.24518 * 16 14 12 26 26 C 1.47199 * 109.47397 * 92.57094 * 25 16 14 27 27 N 6.31860 * 73.98319 * 176.30629 * 2 1 3 28 28 C 1.47156 * 120.98552 * 179.97438 * 8 6 5 29 29 H 1.08997 * 109.46905 * 300.00159 * 1 2 3 30 30 H 1.09007 * 109.46849 * 59.99746 * 1 2 3 31 31 H 1.09000 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47330 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47225 * 300.00479 * 3 2 1 34 34 H 1.09001 * 109.46407 * 59.99909 * 3 2 1 35 35 H 1.09000 * 109.47198 * 300.00114 * 4 2 1 36 36 H 1.08997 * 109.47014 * 59.99881 * 4 2 1 37 37 H 1.09000 * 109.47112 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.68694 * 249.16955 * 9 8 6 39 39 H 1.08999 * 109.68266 * 9.72659 * 9 8 6 40 40 H 1.09000 * 109.51523 * 172.22410 * 10 9 8 41 41 H 1.09005 * 109.51425 * 292.32817 * 10 9 8 42 42 H 0.96998 * 119.99626 * 354.12170 * 20 19 17 43 43 H 1.09007 * 109.46711 * 212.57079 * 25 16 14 44 44 H 1.09002 * 109.47207 * 332.56913 * 25 16 14 45 45 H 1.09000 * 109.68072 * 110.82975 * 28 8 6 46 46 H 1.08998 * 109.67504 * 350.28110 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4169 9 6 2.9157 -2.0361 3.4413 10 6 2.2887 -2.2973 4.8156 11 8 2.0466 -3.6983 4.9650 12 6 1.1180 -4.2359 4.0204 13 1 0.1709 -3.7016 4.0964 14 6 0.8956 -5.6981 4.3094 15 8 1.6667 -6.2984 5.0280 16 7 -0.1600 -6.3388 3.7693 17 6 -0.4118 -7.6451 4.1006 18 1 0.4084 -8.3239 4.2824 19 6 -1.7222 -8.0958 4.2024 20 7 -2.6818 -7.2584 4.5262 21 14 -2.1199 -9.8922 3.8792 22 1 -2.0207 -10.6572 5.1481 23 1 -1.1563 -10.4426 2.8925 24 1 -3.4991 -10.0045 3.3400 25 6 -1.0382 -5.6394 2.8281 26 6 -0.5720 -5.8774 1.4524 27 7 -0.2134 -6.0607 0.3913 28 6 1.6844 -4.0738 2.6058 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 3.9158 -2.4683 3.4060 39 1 2.9726 -0.9625 3.2619 40 1 2.9702 -1.9603 5.5967 41 1 1.3467 -1.7545 4.8951 42 1 -2.4657 -6.3466 4.7769 43 1 -2.0569 -6.0122 2.9362 44 1 -1.0183 -4.5701 3.0387 45 1 2.5602 -4.7116 2.4861 46 1 0.9261 -4.3494 1.8729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268826969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:26 Heat of formation + Delta-G solvation = -122.695111 kcal Electronic energy + Delta-G solvation = -31562.985582 eV Core-core repulsion = 27260.755337 eV Total energy + Delta-G solvation = -4302.230245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23824 -41.31737 -39.79082 -38.28126 -37.88880 -36.70116 -36.15000 -34.88273 -34.05937 -32.59134 -29.58233 -29.25569 -28.38944 -28.29474 -27.12636 -25.51653 -24.26580 -22.46616 -21.51764 -20.49152 -20.11105 -19.31784 -18.76905 -18.37768 -17.97452 -17.45452 -17.33368 -16.73291 -16.53089 -16.35468 -15.76469 -15.68554 -15.62046 -15.39537 -15.32918 -15.12761 -14.79444 -14.55677 -14.20372 -14.07577 -13.74371 -13.56037 -13.36098 -13.18050 -13.14565 -12.97394 -12.91749 -12.87524 -12.76157 -12.53790 -12.48985 -12.37297 -12.00952 -11.93449 -11.90591 -11.44414 -11.40661 -11.14895 -11.05311 -10.56980 -10.04064 -9.89880 -8.81785 -6.23358 0.78420 1.34879 1.42293 1.58648 1.59899 1.64555 1.73358 1.84883 2.14994 2.50546 2.61042 2.73422 3.03715 3.16904 3.38830 3.52887 3.56120 3.72981 3.77606 3.85192 3.92909 3.95116 4.08882 4.13279 4.22590 4.36460 4.46642 4.47975 4.59642 4.64169 4.75154 4.75934 4.79534 4.83592 4.88183 4.97981 5.15535 5.26652 5.32274 5.38667 5.64750 5.84547 5.94852 6.09714 6.38289 6.48063 6.69909 7.09782 7.14320 7.61149 8.43847 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.003599 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.923093 B = 7778.455924 C = 8869.539125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.132 4.132 4 C -0.182 4.182 5 O -0.355 6.355 6 C 0.652 3.348 7 O -0.586 6.586 8 N -0.598 5.598 9 C 0.076 3.924 10 C 0.039 3.961 11 O -0.373 6.373 12 C 0.079 3.921 13 H 0.104 0.896 14 C 0.468 3.532 15 O -0.580 6.580 16 N -0.452 5.452 17 C -0.429 4.429 18 H 0.062 0.938 19 C -0.007 4.007 20 N -0.871 5.871 21 Si 1.109 2.891 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.266 1.266 25 C 0.180 3.820 26 C 0.212 3.788 27 N -0.454 5.454 28 C 0.110 3.890 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.072 0.928 42 H 0.274 0.726 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.067 0.933 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 21.091 -5.362 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.189 4.189 4 C -0.239 4.239 5 O -0.269 6.269 6 C 0.408 3.592 7 O -0.476 6.476 8 N -0.340 5.340 9 C -0.046 4.046 10 C -0.038 4.038 11 O -0.291 6.291 12 C 0.017 3.983 13 H 0.121 0.879 14 C 0.256 3.744 15 O -0.461 6.461 16 N -0.174 5.174 17 C -0.555 4.555 18 H 0.080 0.920 19 C -0.213 4.213 20 N -0.505 5.505 21 Si 0.930 3.070 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.191 1.191 25 C 0.054 3.946 26 C -0.106 4.106 27 N -0.133 5.133 28 C -0.014 4.014 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.148 0.852 40 H 0.162 0.838 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.085 0.915 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.085 19.275 -6.845 21.077 hybrid contribution 1.093 0.764 0.329 1.374 sum 6.178 20.040 -6.516 21.959 Atomic orbital electron populations 1.22484 0.94012 1.03468 1.03864 1.22479 0.94621 0.92891 0.81153 1.21868 1.02507 0.89924 1.04580 1.22485 1.01641 1.01926 0.97835 1.86280 1.71367 1.21891 1.47406 1.18026 0.78469 0.81260 0.81482 1.90956 1.42036 1.70982 1.43608 1.46943 1.53641 1.10972 1.22402 1.22726 0.94100 1.01022 0.86708 1.23445 1.02369 0.80365 0.97572 1.88109 1.62748 1.25035 1.53179 1.22155 0.94577 0.92704 0.88866 0.87878 1.20522 0.83936 0.88089 0.81824 1.90548 1.46477 1.68660 1.40440 1.43477 1.25455 1.12041 1.36449 1.20212 0.95575 0.85326 1.54435 0.92007 1.27463 0.90999 1.09917 0.92902 1.70866 1.35573 1.07898 1.36139 0.82987 0.76656 0.69744 0.77640 1.19751 1.20833 1.19065 1.19451 0.98223 0.99897 0.77056 1.29990 0.92991 0.92387 0.95255 1.81029 1.09239 1.09387 1.13636 1.22069 1.01616 0.81128 0.96556 0.91353 0.89099 0.92572 0.90999 0.88019 0.90642 0.92845 0.88990 0.91886 0.89708 0.85198 0.83810 0.90931 0.91518 0.84914 0.84621 0.91511 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 2 C 0.12 2.33 1.13 -10.79 -0.01 2.32 16 3 C -0.13 -1.43 8.85 71.98 0.64 -0.79 16 4 C -0.18 -3.69 8.37 71.98 0.60 -3.08 16 5 O -0.35 -8.11 8.58 -55.44 -0.48 -8.58 16 6 C 0.65 18.96 7.75 129.79 1.01 19.96 16 7 O -0.59 -20.60 11.35 19.81 0.22 -20.38 16 8 N -0.60 -16.68 3.02 -947.80 -2.86 -19.54 16 9 C 0.08 1.51 6.65 86.35 0.57 2.08 16 10 C 0.04 0.80 6.98 72.08 0.50 1.30 16 11 O -0.37 -12.51 9.97 -130.47 -1.30 -13.82 16 12 C 0.08 2.83 2.36 29.93 0.07 2.90 16 13 H 0.10 3.15 6.68 -2.39 -0.02 3.14 16 14 C 0.47 21.99 6.93 87.66 0.61 22.60 16 15 O -0.58 -32.50 16.40 15.45 0.25 -32.25 16 16 N -0.45 -21.37 2.29 -645.40 -1.48 -22.85 16 17 C -0.43 -22.96 8.86 84.04 0.74 -22.22 16 18 H 0.06 3.64 7.73 -2.91 -0.02 3.62 16 19 C -0.01 -0.37 4.83 84.92 0.41 0.04 16 20 N -0.87 -43.60 12.18 21.66 0.26 -43.33 16 21 Si 1.11 45.84 30.00 68.60 2.06 47.90 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 C 0.18 7.06 4.67 84.57 0.39 7.45 16 26 C 0.21 8.81 13.10 89.45 1.17 9.98 16 27 N -0.45 -20.06 18.51 19.99 0.37 -19.69 16 28 C 0.11 3.77 5.65 86.34 0.49 4.26 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 1.50 5.88 -2.39 -0.01 1.49 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.13 1.87 7.01 -2.39 -0.02 1.85 16 40 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.27 13.44 7.25 -92.71 -0.67 12.77 16 43 H 0.13 5.43 5.38 -2.38 -0.01 5.42 16 44 H 0.14 4.23 5.78 -2.39 -0.01 4.22 16 45 H 0.07 2.50 8.13 -2.39 -0.02 2.49 16 46 H 0.10 3.60 3.54 -2.39 -0.01 3.59 16 Total: -1.00 -73.33 372.84 5.97 -67.36 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.12 Total: 21.26 kcal Atomic # 6 Polarization: 36.11 SS G_CDS: 7.80 Total: 43.92 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.71 Total: -105.42 kcal Atomic # 8 Polarization: -73.73 SS G_CDS: -1.30 Total: -75.03 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.06 Total: 47.90 kcal Total: -73.33 5.97 -67.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268826969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.332 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds