Wall clock time and date at job start Tue Mar 31 2020 22:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46839 * 2 1 4 4 C 1.34826 * 117.00100 * 179.97438 * 3 2 1 5 5 O 1.21594 * 119.99806 * 0.02562 * 4 3 2 6 6 C 1.46752 * 120.00123 * 180.02562 * 4 3 2 7 7 C 1.41466 * 126.51086 * 0.02562 * 6 4 3 8 8 N 1.30311 * 108.16918 * 179.97438 * 7 6 4 9 9 N 1.39900 * 109.20556 * 359.78417 * 8 7 6 10 10 C 1.46504 * 125.74279 * 180.24264 * 9 8 7 11 11 C 1.50693 * 109.47003 * 271.87957 * 10 9 8 12 12 H 1.08007 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00435 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99392 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00612 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46943 * 89.99997 * 15 13 11 17 17 H 1.48497 * 109.47700 * 210.00354 * 15 13 11 18 18 H 1.48498 * 109.47089 * 330.00590 * 15 13 11 19 19 C 1.34760 * 108.51480 * 0.36681 * 9 8 7 20 20 N 1.38483 * 126.43487 * 179.90013 * 19 9 8 21 21 C 1.34776 * 120.00317 * 289.22953 * 20 19 9 22 22 O 1.21269 * 119.99847 * 355.67704 * 21 20 19 23 23 C 1.50701 * 119.99941 * 175.67906 * 21 20 19 24 24 H 1.09001 * 109.46737 * 304.99395 * 23 21 20 25 25 C 1.52994 * 109.47447 * 64.99543 * 23 21 20 26 26 C 1.53002 * 109.47191 * 184.99512 * 25 23 21 27 27 O 1.42899 * 109.46831 * 185.00097 * 23 21 20 28 28 C 1.42904 * 114.00367 * 89.99824 * 27 23 21 29 29 H 1.09000 * 109.47272 * 59.99872 * 1 2 3 30 30 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47468 * 299.99380 * 1 2 3 32 32 H 1.09001 * 109.46963 * 240.00607 * 2 1 3 33 33 H 1.08992 * 109.47562 * 120.00063 * 2 1 3 34 34 H 1.08001 * 125.92073 * 359.94826 * 7 6 4 35 35 H 1.09006 * 109.47204 * 31.87741 * 10 9 8 36 36 H 1.09003 * 109.47138 * 151.87587 * 10 9 8 37 37 H 0.97008 * 119.99930 * 180.02562 * 14 13 11 38 38 H 0.97011 * 119.99586 * 109.22424 * 20 19 9 39 39 H 1.09005 * 109.46688 * 65.00560 * 25 23 21 40 40 H 1.08999 * 109.47518 * 305.00473 * 25 23 21 41 41 H 1.09005 * 109.46449 * 60.00902 * 26 25 23 42 42 H 1.08998 * 109.47392 * 300.00397 * 26 25 23 43 43 H 1.09003 * 109.47159 * 179.97438 * 26 25 23 44 44 H 1.09001 * 109.46903 * 299.99965 * 28 27 23 45 45 H 1.08997 * 109.46954 * 59.99957 * 28 27 23 46 46 H 1.08997 * 109.47356 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5457 0.0005 5 8 4.0913 0.5815 0.0005 6 6 3.9114 2.9019 0.0011 7 6 3.1824 4.1142 0.0017 8 7 4.0340 5.1005 0.0027 9 7 5.3347 4.5854 0.0078 10 6 6.5682 5.3758 0.0153 11 6 6.9727 5.6892 -1.4021 12 1 6.3713 5.3346 -2.2262 13 6 8.1104 6.4285 -1.6470 14 7 8.8429 6.8598 -0.6435 15 14 8.6123 6.8163 -3.4040 16 1 7.9894 8.0968 -3.8255 17 1 10.0904 6.9356 -3.4819 18 1 8.1558 5.7249 -4.3015 19 6 5.2621 3.2398 0.0017 20 7 6.3303 2.3585 0.0020 21 6 7.0990 2.2308 -1.0977 22 8 6.8094 2.8281 -2.1125 23 6 8.3183 1.3457 -1.0661 24 1 8.9672 1.6504 -0.2449 25 6 7.8879 -0.1084 -0.8635 26 6 9.1283 -0.9903 -0.7069 27 8 9.0258 1.4654 -2.3018 28 6 10.0145 2.4973 -2.3081 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.1063 4.2065 0.0010 35 1 6.4007 6.3055 0.5593 36 1 7.3608 4.8077 0.5023 37 1 9.6432 7.3803 -0.8157 38 1 6.5254 1.8330 0.7938 39 1 7.3127 -0.4408 -1.7278 40 1 7.2728 -0.1838 0.0332 41 1 9.7036 -0.6580 0.1573 42 1 9.7434 -0.9150 -1.6036 43 1 8.8217 -2.0263 -0.5621 44 1 9.5376 3.4585 -2.1161 45 1 10.7535 2.2970 -1.5324 46 1 10.5066 2.5232 -3.2803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271553096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:08 Heat of formation + Delta-G solvation = -96.228601 kcal Electronic energy + Delta-G solvation = -31218.956726 eV Core-core repulsion = 26917.874155 eV Total energy + Delta-G solvation = -4301.082571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19290 -39.71890 -39.38137 -37.17110 -36.17965 -34.52393 -33.84978 -33.33264 -31.97208 -31.45256 -29.33943 -27.74996 -27.32061 -25.80686 -24.21200 -23.12119 -22.37863 -22.08978 -20.93377 -20.31972 -19.48838 -17.79725 -17.46172 -17.03549 -16.60511 -16.37867 -16.29001 -15.68619 -15.30325 -14.79854 -14.59907 -14.31063 -14.05246 -13.92949 -13.73330 -13.59521 -13.35525 -13.30177 -13.06058 -12.76412 -12.38282 -12.30604 -11.95110 -11.86516 -11.82159 -11.60123 -11.36636 -11.13233 -11.07243 -10.96361 -10.75730 -10.69235 -10.40455 -10.31327 -10.23928 -9.93882 -9.86489 -9.45168 -8.99972 -8.65871 -8.61201 -8.14472 -6.28874 -4.32410 1.69622 2.52858 2.71632 2.94165 3.06368 3.22006 3.28528 3.39852 3.53473 3.67299 3.96213 4.32499 4.77611 4.89319 4.91709 4.92793 4.99677 5.07501 5.10230 5.23185 5.28032 5.30043 5.47007 5.55010 5.61154 5.68596 5.70195 5.70837 5.84599 5.87046 5.92715 6.06224 6.08788 6.16366 6.27413 6.34505 6.67200 6.71795 6.79765 7.03169 7.16201 7.50509 7.62639 7.75137 7.78902 8.12493 8.25279 8.55268 8.77066 9.33457 10.79596 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.004773 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.092890 B = 5865.252809 C = 7996.215026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.357 6.357 4 C 0.552 3.448 5 O -0.528 6.528 6 C -0.310 4.310 7 C 0.088 3.912 8 N -0.279 5.279 9 N -0.302 5.302 10 C 0.251 3.749 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.067 3.933 14 N -0.897 5.897 15 Si 0.899 3.101 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.387 3.613 20 N -0.657 5.657 21 C 0.496 3.504 22 O -0.468 6.468 23 C 0.084 3.916 24 H 0.088 0.912 25 C -0.115 4.115 26 C -0.148 4.148 27 O -0.356 6.356 28 C 0.025 3.975 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.190 0.810 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.267 0.733 38 H 0.415 0.585 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 -14.645 4.816 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.399 3.601 5 O -0.419 6.419 6 C -0.326 4.326 7 C -0.099 4.099 8 N -0.100 5.100 9 N -0.081 5.081 10 C 0.134 3.866 11 C -0.557 4.557 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.536 5.536 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.191 1.191 19 C 0.157 3.843 20 N -0.314 5.314 21 C 0.281 3.719 22 O -0.335 6.335 23 C 0.022 3.978 24 H 0.105 0.895 25 C -0.153 4.153 26 C -0.205 4.205 27 O -0.273 6.273 28 C -0.072 4.072 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.207 0.793 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.968 -13.132 3.883 14.568 hybrid contribution 0.474 -0.612 -0.292 0.827 sum -4.495 -13.744 3.591 14.900 Atomic orbital electron populations 1.21793 0.92981 1.02605 1.03497 1.22901 0.94954 0.80757 1.02293 1.86555 1.24308 1.31483 1.85070 1.19788 0.79910 0.88440 0.71972 1.90778 1.60250 1.42335 1.48492 1.18814 0.91260 0.91710 1.30779 1.23841 0.99899 0.88529 0.97611 1.77250 0.86866 1.22195 1.23692 1.49913 1.07793 1.03283 1.47116 1.19920 0.75327 0.91262 1.00110 1.21264 1.09641 1.34016 0.90786 0.90856 1.24840 0.95685 0.95058 0.97976 1.69926 1.16241 1.36634 1.30805 0.86433 0.77495 0.79233 0.84266 1.20329 1.20929 1.19053 1.17641 0.87122 0.82915 0.96648 1.42519 1.29621 1.41596 1.17653 1.21512 0.84701 0.82687 0.83037 1.90827 1.69319 1.43120 1.30265 1.21992 0.91241 0.95400 0.89196 0.89450 1.21586 0.98914 0.91342 1.03466 1.21722 0.97492 0.99085 1.02192 1.87938 1.51681 1.54463 1.33182 1.22938 0.90417 0.91765 1.02055 0.91505 0.90578 0.91534 0.91541 0.91545 0.79312 0.92147 0.93283 0.92393 0.74693 0.90341 0.89823 0.92786 0.91822 0.92385 0.92078 0.94133 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.07 0.73 6.20 37.16 0.23 0.96 16 3 O -0.36 -5.20 10.07 -40.83 -0.41 -5.61 16 4 C 0.55 9.50 7.94 34.17 0.27 9.77 16 5 O -0.53 -9.54 16.09 -19.34 -0.31 -9.85 16 6 C -0.31 -5.81 6.15 -104.86 -0.64 -6.46 16 7 C 0.09 1.57 11.86 -16.97 -0.20 1.37 16 8 N -0.28 -5.96 12.47 30.88 0.39 -5.58 16 9 N -0.30 -6.82 3.58 -61.12 -0.22 -7.04 16 10 C 0.25 6.24 6.02 -5.20 -0.03 6.21 16 11 C -0.52 -14.28 8.21 -34.44 -0.28 -14.56 16 12 H 0.07 2.20 7.35 -52.48 -0.39 1.82 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.90 -24.69 13.29 55.43 0.74 -23.95 16 15 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.39 7.88 6.48 -153.43 -0.99 6.88 16 20 N -0.66 -11.75 4.36 -11.08 -0.05 -11.80 16 21 C 0.50 9.72 7.01 -10.99 -0.08 9.64 16 22 O -0.47 -11.53 14.80 -14.30 -0.21 -11.74 16 23 C 0.08 1.30 2.52 -27.89 -0.07 1.23 16 24 H 0.09 1.17 7.79 -51.93 -0.40 0.77 16 25 C -0.12 -1.45 5.61 -26.73 -0.15 -1.60 16 26 C -0.15 -1.51 9.81 37.16 0.36 -1.14 16 27 O -0.36 -6.19 9.42 -55.09 -0.52 -6.71 16 28 C 0.02 0.40 10.81 101.05 1.09 1.49 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.19 2.59 8.06 -52.49 -0.42 2.17 16 35 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.05 1.22 8.03 -51.93 -0.42 0.80 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.41 5.86 8.39 -40.82 -0.34 5.52 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.94 7.66 -51.93 -0.40 0.55 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -33.64 400.35 -6.78 -40.42 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.98 Total: 4.41 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -0.21 Total: 14.69 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.85 Total: -48.36 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.45 Total: -33.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.64 -6.78 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271553096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.808 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds