Wall clock time and date at job start Tue Mar 31 2020 22:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46839 * 2 1 4 4 C 1.34826 * 117.00100 * 179.97438 * 3 2 1 5 5 O 1.21594 * 119.99806 * 0.02562 * 4 3 2 6 6 C 1.46752 * 120.00123 * 180.02562 * 4 3 2 7 7 C 1.41466 * 126.51086 * 0.02562 * 6 4 3 8 8 N 1.30311 * 108.16918 * 179.97438 * 7 6 4 9 9 N 1.39900 * 109.20556 * 359.78417 * 8 7 6 10 10 C 1.46504 * 125.74279 * 180.24264 * 9 8 7 11 11 C 1.50693 * 109.47003 * 271.87957 * 10 9 8 12 12 H 1.08007 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00435 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99392 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00612 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46943 * 89.99997 * 15 13 11 17 17 H 1.48497 * 109.47700 * 210.00354 * 15 13 11 18 18 H 1.48498 * 109.47089 * 330.00590 * 15 13 11 19 19 C 1.34760 * 108.51480 * 0.36681 * 9 8 7 20 20 N 1.38483 * 126.43487 * 179.90013 * 19 9 8 21 21 C 1.34776 * 120.00317 * 289.22953 * 20 19 9 22 22 O 1.21269 * 119.99847 * 355.67704 * 21 20 19 23 23 C 1.50701 * 119.99941 * 175.67906 * 21 20 19 24 24 H 1.09001 * 109.46737 * 304.99395 * 23 21 20 25 25 C 1.52994 * 109.47447 * 64.99543 * 23 21 20 26 26 C 1.53002 * 109.47191 * 184.99512 * 25 23 21 27 27 O 1.42899 * 109.46831 * 185.00097 * 23 21 20 28 28 C 1.42904 * 114.00367 * 89.99824 * 27 23 21 29 29 H 1.09000 * 109.47272 * 59.99872 * 1 2 3 30 30 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47468 * 299.99380 * 1 2 3 32 32 H 1.09001 * 109.46963 * 240.00607 * 2 1 3 33 33 H 1.08992 * 109.47562 * 120.00063 * 2 1 3 34 34 H 1.08001 * 125.92073 * 359.94826 * 7 6 4 35 35 H 1.09006 * 109.47204 * 31.87741 * 10 9 8 36 36 H 1.09003 * 109.47138 * 151.87587 * 10 9 8 37 37 H 0.97008 * 119.99930 * 180.02562 * 14 13 11 38 38 H 0.97011 * 119.99586 * 109.22424 * 20 19 9 39 39 H 1.09005 * 109.46688 * 65.00560 * 25 23 21 40 40 H 1.08999 * 109.47518 * 305.00473 * 25 23 21 41 41 H 1.09005 * 109.46449 * 60.00902 * 26 25 23 42 42 H 1.08998 * 109.47392 * 300.00397 * 26 25 23 43 43 H 1.09003 * 109.47159 * 179.97438 * 26 25 23 44 44 H 1.09001 * 109.46903 * 299.99965 * 28 27 23 45 45 H 1.08997 * 109.46954 * 59.99957 * 28 27 23 46 46 H 1.08997 * 109.47356 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5457 0.0005 5 8 4.0913 0.5815 0.0005 6 6 3.9114 2.9019 0.0011 7 6 3.1824 4.1142 0.0017 8 7 4.0340 5.1005 0.0027 9 7 5.3347 4.5854 0.0078 10 6 6.5682 5.3758 0.0153 11 6 6.9727 5.6892 -1.4021 12 1 6.3713 5.3346 -2.2262 13 6 8.1104 6.4285 -1.6470 14 7 8.8429 6.8598 -0.6435 15 14 8.6123 6.8163 -3.4040 16 1 7.9894 8.0968 -3.8255 17 1 10.0904 6.9356 -3.4819 18 1 8.1558 5.7249 -4.3015 19 6 5.2621 3.2398 0.0017 20 7 6.3303 2.3585 0.0020 21 6 7.0990 2.2308 -1.0977 22 8 6.8094 2.8281 -2.1125 23 6 8.3183 1.3457 -1.0661 24 1 8.9672 1.6504 -0.2449 25 6 7.8879 -0.1084 -0.8635 26 6 9.1283 -0.9903 -0.7069 27 8 9.0258 1.4654 -2.3018 28 6 10.0145 2.4973 -2.3081 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.1063 4.2065 0.0010 35 1 6.4007 6.3055 0.5593 36 1 7.3608 4.8077 0.5023 37 1 9.6432 7.3803 -0.8157 38 1 6.5254 1.8330 0.7938 39 1 7.3127 -0.4408 -1.7278 40 1 7.2728 -0.1838 0.0332 41 1 9.7036 -0.6580 0.1573 42 1 9.7434 -0.9150 -1.6036 43 1 8.8217 -2.0263 -0.5621 44 1 9.5376 3.4585 -2.1161 45 1 10.7535 2.2970 -1.5324 46 1 10.5066 2.5232 -3.2803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271553096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:07 Heat of formation + Delta-G solvation = -117.370024 kcal Electronic energy + Delta-G solvation = -31219.873487 eV Core-core repulsion = 26917.874155 eV Total energy + Delta-G solvation = -4301.999332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.73947 -41.07700 -40.79426 -38.56892 -37.43900 -36.10595 -35.77369 -34.47892 -33.63048 -32.50522 -30.79028 -29.37936 -28.76732 -27.14048 -25.79731 -24.59861 -23.53951 -23.29237 -22.28758 -21.71988 -21.06549 -19.27745 -19.07402 -18.55703 -18.35562 -17.67732 -17.42320 -17.10176 -16.78094 -16.55119 -16.14554 -15.79920 -15.52131 -15.28092 -14.99781 -14.89530 -14.72061 -14.49760 -14.36953 -14.18865 -13.77561 -13.50513 -13.45814 -13.11638 -12.99701 -12.85003 -12.80114 -12.53000 -12.50977 -12.34102 -12.29144 -12.06461 -11.91323 -11.75812 -11.68783 -11.41620 -11.36030 -11.04899 -10.76702 -10.47557 -10.29231 -9.73150 -8.38987 -6.48309 0.17061 1.03004 1.21589 1.27510 1.29221 1.43919 1.47924 1.78328 2.03889 2.21146 2.32427 2.70090 2.93188 3.47292 3.64346 3.82074 3.87178 3.91112 4.10640 4.16458 4.18939 4.32266 4.39248 4.41484 4.47846 4.49564 4.54470 4.66621 4.79789 4.81901 4.86223 4.96230 4.99538 5.01230 5.10165 5.16944 5.21166 5.43807 5.46442 5.51749 5.53277 5.72202 5.83064 5.95099 6.22740 6.55232 6.64310 6.87480 7.06401 7.20266 8.69189 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009825 B = 0.004773 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.092890 B = 5865.252809 C = 7996.215026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.556 3.444 5 O -0.538 6.538 6 C -0.313 4.313 7 C 0.106 3.894 8 N -0.314 5.314 9 N -0.327 5.327 10 C 0.270 3.730 11 C -0.527 4.527 12 H 0.041 0.959 13 C 0.035 3.965 14 N -0.913 5.913 15 Si 0.948 3.052 16 H -0.271 1.271 17 H -0.263 1.263 18 H -0.285 1.285 19 C 0.374 3.626 20 N -0.646 5.646 21 C 0.491 3.509 22 O -0.528 6.528 23 C 0.085 3.915 24 H 0.114 0.886 25 C -0.108 4.108 26 C -0.142 4.142 27 O -0.371 6.371 28 C 0.026 3.974 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.233 0.767 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.273 0.727 38 H 0.432 0.568 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.017 0.983 45 H 0.073 0.927 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 -16.554 5.590 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.271 6.271 4 C 0.403 3.597 5 O -0.430 6.430 6 C -0.329 4.329 7 C -0.080 4.080 8 N -0.135 5.135 9 N -0.106 5.106 10 C 0.152 3.848 11 C -0.565 4.565 12 H 0.059 0.941 13 C -0.167 4.167 14 N -0.552 5.552 15 Si 0.773 3.227 16 H -0.197 1.197 17 H -0.187 1.187 18 H -0.211 1.211 19 C 0.145 3.855 20 N -0.304 5.304 21 C 0.278 3.722 22 O -0.400 6.400 23 C 0.024 3.976 24 H 0.132 0.868 25 C -0.146 4.146 26 C -0.199 4.199 27 O -0.288 6.288 28 C -0.070 4.070 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.273 0.727 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.036 0.964 45 H 0.091 0.909 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.383 -15.069 4.709 16.680 hybrid contribution 0.448 -0.131 -0.509 0.691 sum -4.935 -15.200 4.200 16.524 Atomic orbital electron populations 1.21820 0.90272 1.04357 1.03725 1.23293 0.97011 0.78919 1.02531 1.86541 1.22349 1.33816 1.84371 1.19522 0.80900 0.87493 0.71802 1.90764 1.60874 1.42434 1.48935 1.19095 0.90771 0.93097 1.29933 1.24536 1.01316 0.87333 0.94854 1.77196 0.86822 1.23835 1.25599 1.49631 1.07578 1.03939 1.49438 1.19385 0.76470 0.90701 0.98232 1.21165 1.09752 1.34419 0.91165 0.94092 1.25391 0.95539 0.94797 1.00926 1.69962 1.16517 1.36788 1.31944 0.85707 0.78322 0.78323 0.80365 1.19692 1.18686 1.21095 1.18066 0.88552 0.82538 0.96310 1.42542 1.28840 1.40925 1.18071 1.22444 0.85367 0.82080 0.82305 1.90798 1.70960 1.45736 1.32467 1.22284 0.89638 0.96321 0.89393 0.86839 1.21610 1.00185 0.89504 1.03282 1.21697 0.96163 0.99480 1.02536 1.87924 1.52038 1.54268 1.34527 1.22971 0.90470 0.89510 1.04087 0.91602 0.88043 0.90964 0.91896 0.90800 0.75111 0.94105 0.93693 0.91803 0.72651 0.92227 0.88287 0.91065 0.92686 0.90638 0.96429 0.90900 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 10.29 71.98 0.74 -1.15 16 2 C 0.06 1.12 6.20 71.98 0.45 1.57 16 3 O -0.35 -9.59 10.07 -57.38 -0.58 -10.17 16 4 C 0.56 18.46 7.94 70.05 0.56 19.01 16 5 O -0.54 -18.81 16.09 19.53 0.31 -18.50 16 6 C -0.31 -11.62 6.15 -20.02 -0.12 -11.74 16 7 C 0.11 3.72 11.86 85.71 1.02 4.73 16 8 N -0.31 -13.62 12.47 -56.22 -0.70 -14.33 16 9 N -0.33 -15.24 3.58 -347.30 -1.24 -16.48 16 10 C 0.27 14.05 6.02 85.63 0.52 14.56 16 11 C -0.53 -30.26 8.21 25.60 0.21 -30.05 16 12 H 0.04 2.60 7.35 -2.91 -0.02 2.57 16 13 C 0.03 1.92 5.46 84.65 0.46 2.38 16 14 N -0.91 -50.86 13.29 21.45 0.28 -50.57 16 15 Si 0.95 45.53 29.54 68.60 2.03 47.56 16 16 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 19 C 0.37 15.50 6.48 132.55 0.86 16.36 16 20 N -0.65 -23.31 4.36 -307.36 -1.34 -24.65 16 21 C 0.49 19.66 7.01 87.66 0.61 20.27 16 22 O -0.53 -27.22 14.80 15.99 0.24 -26.98 16 23 C 0.09 2.60 2.52 29.85 0.08 2.68 16 24 H 0.11 2.86 7.79 -2.39 -0.02 2.84 16 25 C -0.11 -2.56 5.61 30.59 0.17 -2.39 16 26 C -0.14 -2.51 9.81 71.98 0.71 -1.81 16 27 O -0.37 -12.85 9.42 -129.99 -1.22 -14.07 16 28 C 0.03 0.83 10.81 113.37 1.23 2.06 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.23 5.76 8.06 -2.91 -0.02 5.74 16 35 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 37 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 38 H 0.43 11.96 8.39 -92.70 -0.78 11.18 16 39 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.10 2.02 7.66 -2.39 -0.02 2.00 16 41 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.05 1.09 7.82 -2.39 -0.02 1.07 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 46 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -76.20 400.35 5.47 -70.73 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.22 Total: 20.97 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 7.48 Total: 36.49 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -3.00 Total: -106.03 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -1.25 Total: -69.72 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -76.20 5.47 -70.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271553096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.643 kcal (2) G-P(sol) polarization free energy of solvation -76.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds