Wall clock time and date at job start Tue Mar 31 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45197 * 109.47113 * 2 1 4 4 C 1.34833 * 116.99935 * 180.02562 * 3 2 1 5 5 O 1.21589 * 119.99819 * 359.97438 * 4 3 2 6 6 C 1.46745 * 120.00058 * 179.97438 * 4 3 2 7 7 C 1.41480 * 126.51111 * 359.97438 * 6 4 3 8 8 N 1.30311 * 108.16839 * 180.02562 * 7 6 4 9 9 N 1.39905 * 109.20831 * 359.76493 * 8 7 6 10 10 C 1.46497 * 125.74220 * 180.28220 * 9 8 7 11 11 C 1.50705 * 109.46678 * 276.93048 * 10 9 8 12 12 H 1.08002 * 120.00223 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99703 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00057 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47124 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47293 * 119.99704 * 15 13 11 18 18 H 1.48499 * 109.47130 * 240.00294 * 15 13 11 19 19 C 1.34771 * 108.51143 * 0.39610 * 9 8 7 20 20 N 1.38483 * 126.43045 * 179.87985 * 19 9 8 21 21 C 1.34766 * 120.00140 * 310.85856 * 20 19 9 22 22 O 1.21274 * 119.99813 * 1.93289 * 21 20 19 23 23 C 1.50701 * 120.00208 * 181.93163 * 21 20 19 24 24 H 1.09002 * 109.47029 * 55.00551 * 23 21 20 25 25 C 1.52996 * 109.47396 * 295.00185 * 23 21 20 26 26 C 1.52996 * 109.47334 * 173.80552 * 25 23 21 27 27 O 1.42899 * 109.47437 * 174.99635 * 23 21 20 28 28 C 1.42897 * 114.00660 * 225.92027 * 27 23 21 29 29 H 1.08999 * 109.47352 * 300.00517 * 1 2 3 30 30 H 1.09001 * 109.46495 * 60.00700 * 1 2 3 31 31 H 1.08995 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47352 * 239.99483 * 2 1 3 33 33 H 1.09001 * 109.46495 * 119.99300 * 2 1 3 34 34 H 1.07994 * 125.91789 * 359.97438 * 7 6 4 35 35 H 1.08992 * 109.47547 * 36.92774 * 10 9 8 36 36 H 1.09000 * 109.46915 * 156.93480 * 10 9 8 37 37 H 0.97001 * 120.00044 * 180.02562 * 14 13 11 38 38 H 0.96998 * 119.99514 * 130.86065 * 20 19 9 39 39 H 1.09000 * 109.46916 * 53.80236 * 25 23 21 40 40 H 1.09003 * 109.46673 * 293.81002 * 25 23 21 41 41 H 1.09001 * 109.46940 * 180.02562 * 26 25 23 42 42 H 1.08994 * 109.47067 * 60.00291 * 26 25 23 43 43 H 1.08998 * 109.47430 * 300.00330 * 26 25 23 44 44 H 1.09001 * 109.47196 * 65.72884 * 28 27 23 45 45 H 1.08993 * 109.47394 * 185.72992 * 28 27 23 46 46 H 1.09003 * 109.46694 * 305.73563 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3508 1.5456 -0.0005 5 8 4.0914 0.5813 -0.0005 6 6 3.9117 2.9016 -0.0011 7 6 3.1827 4.1141 -0.0017 8 7 4.0344 5.1003 -0.0027 9 7 5.3351 4.5852 0.0026 10 6 6.5686 5.3755 0.0092 11 6 6.9054 5.7926 -1.3992 12 1 6.2645 5.4986 -2.2174 13 6 8.0318 6.5494 -1.6434 14 7 8.8118 6.9077 -0.6471 15 14 8.4489 7.0669 -3.3891 16 1 7.4196 6.5401 -4.3210 17 1 8.4800 8.5493 -3.4719 18 1 9.7790 6.5222 -3.7624 19 6 5.2624 3.2394 -0.0019 20 7 6.3306 2.3581 -0.0012 21 6 7.3391 2.5210 -0.8801 22 8 7.3284 3.4595 -1.6482 23 6 8.4801 1.5369 -0.9087 24 1 8.0873 0.5289 -1.0421 25 6 9.2523 1.6130 0.4099 26 6 10.3127 0.5106 0.4443 27 8 9.3558 1.8540 -1.9925 28 6 9.7477 0.7232 -2.7732 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.1067 4.2064 -0.0022 35 1 6.4285 6.2625 0.6270 36 1 7.3827 4.7750 0.4149 37 1 9.6040 7.4405 -0.8188 38 1 6.3528 1.6236 0.6319 39 1 8.5624 1.4797 1.2432 40 1 9.7368 2.5860 0.4916 41 1 10.8625 0.5646 1.3840 42 1 11.0026 0.6440 -0.3889 43 1 9.8282 -0.4623 0.3626 44 1 8.8757 0.3141 -3.2835 45 1 10.4894 1.0302 -3.5106 46 1 10.1769 -0.0374 -2.1209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271553099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:11 Heat of formation + Delta-G solvation = -85.682883 kcal Electronic energy + Delta-G solvation = -31091.517077 eV Core-core repulsion = 26790.891802 eV Total energy + Delta-G solvation = -4300.625274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20146 -39.73823 -39.30608 -37.39712 -36.22183 -34.41782 -33.67803 -33.17959 -31.91482 -31.38223 -29.37306 -28.02055 -27.29398 -25.73167 -24.15819 -23.05688 -22.37398 -22.08350 -21.08267 -20.24764 -19.30757 -17.71742 -17.39745 -17.03820 -16.53215 -16.36907 -16.28400 -15.84482 -15.29821 -14.76128 -14.50215 -14.43408 -14.05654 -13.89995 -13.70997 -13.54846 -13.28825 -13.24506 -13.04773 -12.77571 -12.48969 -12.19078 -11.93721 -11.88096 -11.75023 -11.61925 -11.53198 -11.30517 -10.92567 -10.86079 -10.75032 -10.69806 -10.42960 -10.20913 -9.98564 -9.87005 -9.77093 -9.60192 -8.98304 -8.44925 -8.35999 -7.99618 -6.08321 -4.02907 1.74399 2.56388 2.72928 3.00879 3.07655 3.37115 3.42659 3.44382 3.53195 3.65727 4.09542 4.50420 4.79945 4.87390 4.87758 4.90953 4.98496 5.05944 5.21027 5.21917 5.27814 5.30300 5.34870 5.42208 5.52996 5.56943 5.65835 5.68965 5.69317 5.73055 5.85023 5.88755 6.02002 6.10816 6.25377 6.40111 6.66446 6.76437 6.91938 7.12735 7.14920 7.56366 7.69925 7.91750 7.98149 8.13940 8.31555 8.65398 8.92596 9.54790 11.01652 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009321 B = 0.004610 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.288474 B = 6072.665843 C = 8069.563397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.554 3.446 5 O -0.538 6.538 6 C -0.329 4.329 7 C 0.092 3.908 8 N -0.280 5.280 9 N -0.304 5.304 10 C 0.257 3.743 11 C -0.479 4.479 12 H 0.066 0.934 13 C 0.065 3.935 14 N -0.901 5.901 15 Si 0.909 3.091 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.283 1.283 19 C 0.393 3.607 20 N -0.652 5.652 21 C 0.466 3.534 22 O -0.411 6.411 23 C 0.086 3.914 24 H 0.086 0.914 25 C -0.138 4.138 26 C -0.150 4.150 27 O -0.349 6.349 28 C 0.026 3.974 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.189 0.811 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.263 0.737 38 H 0.418 0.582 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 -16.861 3.667 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.273 6.273 4 C 0.402 3.598 5 O -0.430 6.430 6 C -0.345 4.345 7 C -0.096 4.096 8 N -0.100 5.100 9 N -0.084 5.084 10 C 0.140 3.860 11 C -0.517 4.517 12 H 0.084 0.916 13 C -0.137 4.137 14 N -0.541 5.541 15 Si 0.737 3.263 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.209 1.209 19 C 0.161 3.839 20 N -0.309 5.309 21 C 0.250 3.750 22 O -0.275 6.275 23 C 0.024 3.976 24 H 0.104 0.896 25 C -0.176 4.176 26 C -0.208 4.208 27 O -0.265 6.265 28 C -0.070 4.070 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.206 0.794 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.257 0.743 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.106 0.894 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.178 -14.784 3.015 15.952 hybrid contribution 0.270 -1.460 -0.543 1.581 sum -4.908 -16.244 2.472 17.149 Atomic orbital electron populations 1.21794 0.92977 1.02597 1.03525 1.22902 0.94968 0.80798 1.02256 1.86559 1.24278 1.31410 1.85052 1.19788 0.79882 0.88382 0.71749 1.90757 1.60310 1.42502 1.49382 1.18601 0.90683 0.91718 1.33542 1.23816 0.99850 0.88451 0.97480 1.77260 0.86818 1.22097 1.23871 1.49806 1.07870 1.02643 1.48042 1.19970 0.75016 0.90689 1.00302 1.20988 1.09103 1.30576 0.91057 0.91553 1.24770 0.95479 0.95719 0.97700 1.69912 1.15095 1.38117 1.30936 0.86247 0.78427 0.77395 0.84212 1.19791 1.21280 1.20892 1.17792 0.87060 0.83342 0.95700 1.42630 1.19683 1.30048 1.38508 1.21103 0.82975 0.87633 0.83287 1.91258 1.74932 1.25716 1.35585 1.21838 0.89528 0.96933 0.89276 0.89580 1.21942 0.98827 1.01747 0.95113 1.21792 0.98903 0.97672 1.02398 1.88127 1.64263 1.31620 1.42538 1.22951 0.99745 0.89238 0.95107 0.91512 0.91497 0.90594 0.91583 0.91557 0.79374 0.92772 0.93360 0.92741 0.74328 0.90699 0.89605 0.92167 0.92057 0.92874 0.94075 0.89401 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.70 6.20 37.16 0.23 0.93 16 3 O -0.36 -5.05 10.07 -40.85 -0.41 -5.46 16 4 C 0.55 9.29 7.94 34.17 0.27 9.56 16 5 O -0.54 -9.44 15.76 -19.33 -0.30 -9.75 16 6 C -0.33 -6.09 6.15 -104.86 -0.64 -6.74 16 7 C 0.09 1.64 11.86 -16.96 -0.20 1.44 16 8 N -0.28 -6.06 12.47 30.88 0.39 -5.67 16 9 N -0.30 -7.01 3.50 -61.13 -0.21 -7.22 16 10 C 0.26 6.68 5.26 -5.19 -0.03 6.65 16 11 C -0.48 -13.72 6.25 -34.44 -0.22 -13.93 16 12 H 0.07 2.03 7.56 -52.49 -0.40 1.63 16 13 C 0.06 1.86 5.46 -17.82 -0.10 1.77 16 14 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 15 Si 0.91 23.15 29.54 -169.99 -5.02 18.13 16 16 H -0.27 -7.05 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 19 C 0.39 8.03 6.91 -153.42 -1.06 6.97 16 20 N -0.65 -11.69 4.58 -11.08 -0.05 -11.74 16 21 C 0.47 9.19 6.21 -10.99 -0.07 9.12 16 22 O -0.41 -10.31 11.40 -14.30 -0.16 -10.48 16 23 C 0.09 1.33 2.64 -27.88 -0.07 1.25 16 24 H 0.09 1.07 7.66 -51.93 -0.40 0.68 16 25 C -0.14 -1.83 5.61 -26.74 -0.15 -1.98 16 26 C -0.15 -1.55 9.13 37.16 0.34 -1.21 16 27 O -0.35 -6.06 9.58 -55.09 -0.53 -6.59 16 28 C 0.03 0.32 10.35 101.05 1.05 1.37 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.19 2.56 8.06 -52.49 -0.42 2.14 16 35 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.05 1.29 7.02 -51.93 -0.36 0.92 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.42 6.11 8.01 -40.82 -0.33 5.78 16 39 H 0.07 0.85 7.69 -51.93 -0.40 0.45 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.04 0.43 6.51 -51.93 -0.34 0.09 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -34.95 388.79 -6.76 -41.71 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.78 Total: 2.43 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -0.27 Total: 14.41 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.86 Total: -50.25 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.41 Total: -32.28 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.95 -6.76 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271553099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.978 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds