Wall clock time and date at job start Tue Mar 31 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45197 * 109.47113 * 2 1 4 4 C 1.34833 * 116.99935 * 180.02562 * 3 2 1 5 5 O 1.21589 * 119.99819 * 359.97438 * 4 3 2 6 6 C 1.46745 * 120.00058 * 179.97438 * 4 3 2 7 7 C 1.41480 * 126.51111 * 359.97438 * 6 4 3 8 8 N 1.30311 * 108.16839 * 180.02562 * 7 6 4 9 9 N 1.39905 * 109.20831 * 359.76493 * 8 7 6 10 10 C 1.46497 * 125.74220 * 180.28220 * 9 8 7 11 11 C 1.50705 * 109.46678 * 276.93048 * 10 9 8 12 12 H 1.08002 * 120.00223 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99703 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00057 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47124 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47293 * 119.99704 * 15 13 11 18 18 H 1.48499 * 109.47130 * 240.00294 * 15 13 11 19 19 C 1.34771 * 108.51143 * 0.39610 * 9 8 7 20 20 N 1.38483 * 126.43045 * 179.87985 * 19 9 8 21 21 C 1.34766 * 120.00140 * 310.85856 * 20 19 9 22 22 O 1.21274 * 119.99813 * 1.93289 * 21 20 19 23 23 C 1.50701 * 120.00208 * 181.93163 * 21 20 19 24 24 H 1.09002 * 109.47029 * 55.00551 * 23 21 20 25 25 C 1.52996 * 109.47396 * 295.00185 * 23 21 20 26 26 C 1.52996 * 109.47334 * 173.80552 * 25 23 21 27 27 O 1.42899 * 109.47437 * 174.99635 * 23 21 20 28 28 C 1.42897 * 114.00660 * 225.92027 * 27 23 21 29 29 H 1.08999 * 109.47352 * 300.00517 * 1 2 3 30 30 H 1.09001 * 109.46495 * 60.00700 * 1 2 3 31 31 H 1.08995 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47352 * 239.99483 * 2 1 3 33 33 H 1.09001 * 109.46495 * 119.99300 * 2 1 3 34 34 H 1.07994 * 125.91789 * 359.97438 * 7 6 4 35 35 H 1.08992 * 109.47547 * 36.92774 * 10 9 8 36 36 H 1.09000 * 109.46915 * 156.93480 * 10 9 8 37 37 H 0.97001 * 120.00044 * 180.02562 * 14 13 11 38 38 H 0.96998 * 119.99514 * 130.86065 * 20 19 9 39 39 H 1.09000 * 109.46916 * 53.80236 * 25 23 21 40 40 H 1.09003 * 109.46673 * 293.81002 * 25 23 21 41 41 H 1.09001 * 109.46940 * 180.02562 * 26 25 23 42 42 H 1.08994 * 109.47067 * 60.00291 * 26 25 23 43 43 H 1.08998 * 109.47430 * 300.00330 * 26 25 23 44 44 H 1.09001 * 109.47196 * 65.72884 * 28 27 23 45 45 H 1.08993 * 109.47394 * 185.72992 * 28 27 23 46 46 H 1.09003 * 109.46694 * 305.73563 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3508 1.5456 -0.0005 5 8 4.0914 0.5813 -0.0005 6 6 3.9117 2.9016 -0.0011 7 6 3.1827 4.1141 -0.0017 8 7 4.0344 5.1003 -0.0027 9 7 5.3351 4.5852 0.0026 10 6 6.5686 5.3755 0.0092 11 6 6.9054 5.7926 -1.3992 12 1 6.2645 5.4986 -2.2174 13 6 8.0318 6.5494 -1.6434 14 7 8.8118 6.9077 -0.6471 15 14 8.4489 7.0669 -3.3891 16 1 7.4196 6.5401 -4.3210 17 1 8.4800 8.5493 -3.4719 18 1 9.7790 6.5222 -3.7624 19 6 5.2624 3.2394 -0.0019 20 7 6.3306 2.3581 -0.0012 21 6 7.3391 2.5210 -0.8801 22 8 7.3284 3.4595 -1.6482 23 6 8.4801 1.5369 -0.9087 24 1 8.0873 0.5289 -1.0421 25 6 9.2523 1.6130 0.4099 26 6 10.3127 0.5106 0.4443 27 8 9.3558 1.8540 -1.9925 28 6 9.7477 0.7232 -2.7732 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.1067 4.2064 -0.0022 35 1 6.4285 6.2625 0.6270 36 1 7.3827 4.7750 0.4149 37 1 9.6040 7.4405 -0.8188 38 1 6.3528 1.6236 0.6319 39 1 8.5624 1.4797 1.2432 40 1 9.7368 2.5860 0.4916 41 1 10.8625 0.5646 1.3840 42 1 11.0026 0.6440 -0.3889 43 1 9.8282 -0.4623 0.3626 44 1 8.8757 0.3141 -3.2835 45 1 10.4894 1.0302 -3.5106 46 1 10.1769 -0.0374 -2.1209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271553099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:11 Heat of formation + Delta-G solvation = -108.686005 kcal Electronic energy + Delta-G solvation = -31092.514567 eV Core-core repulsion = 26790.891802 eV Total energy + Delta-G solvation = -4301.622764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.75755 -41.04548 -40.70685 -38.72487 -37.44806 -35.99992 -35.68311 -34.29006 -33.54930 -32.48278 -30.80261 -29.33137 -29.04201 -26.86742 -25.71878 -24.56313 -23.54948 -23.29250 -22.44843 -21.60523 -20.90350 -19.18345 -19.09268 -18.42717 -18.20551 -17.68774 -17.42087 -17.21313 -16.66657 -16.48438 -16.15167 -15.78241 -15.52958 -15.25781 -14.99272 -14.87710 -14.59288 -14.39709 -14.23863 -14.16146 -13.73502 -13.48879 -13.43452 -13.02291 -13.00788 -12.79108 -12.78232 -12.61155 -12.47256 -12.33732 -12.26552 -12.24632 -11.83590 -11.77347 -11.45321 -11.39923 -11.28303 -11.12406 -10.65484 -10.39257 -10.12351 -9.55719 -8.27472 -6.27032 0.23169 1.07932 1.24353 1.31247 1.33826 1.46197 1.57704 1.75669 1.99427 2.23732 2.39651 2.91533 3.07083 3.53525 3.67389 3.78866 3.87707 3.92242 4.12670 4.16670 4.19581 4.28653 4.38064 4.42429 4.48809 4.50544 4.55617 4.71880 4.78068 4.81716 4.86056 4.96176 4.99124 5.02903 5.03825 5.16142 5.22881 5.35211 5.50371 5.56197 5.61392 5.84032 5.90138 6.05902 6.27694 6.64276 6.72180 6.89150 7.15456 7.32599 8.82453 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009321 B = 0.004610 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.288474 B = 6072.665843 C = 8069.563397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 O -0.353 6.353 4 C 0.560 3.440 5 O -0.546 6.546 6 C -0.327 4.327 7 C 0.111 3.889 8 N -0.318 5.318 9 N -0.332 5.332 10 C 0.281 3.719 11 C -0.477 4.477 12 H 0.039 0.961 13 C 0.021 3.979 14 N -0.926 5.926 15 Si 0.961 3.039 16 H -0.282 1.282 17 H -0.270 1.270 18 H -0.280 1.280 19 C 0.380 3.620 20 N -0.640 5.640 21 C 0.464 3.536 22 O -0.475 6.475 23 C 0.092 3.908 24 H 0.123 0.877 25 C -0.134 4.134 26 C -0.144 4.144 27 O -0.390 6.390 28 C 0.019 3.981 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.233 0.767 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.266 0.734 38 H 0.434 0.566 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.093 0.907 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 -19.686 3.865 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.270 6.270 4 C 0.408 3.592 5 O -0.438 6.438 6 C -0.343 4.343 7 C -0.076 4.076 8 N -0.138 5.138 9 N -0.111 5.111 10 C 0.162 3.838 11 C -0.516 4.516 12 H 0.057 0.943 13 C -0.178 4.178 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.207 1.207 17 H -0.196 1.196 18 H -0.206 1.206 19 C 0.149 3.851 20 N -0.297 5.297 21 C 0.250 3.750 22 O -0.343 6.343 23 C 0.031 3.969 24 H 0.141 0.859 25 C -0.172 4.172 26 C -0.201 4.201 27 O -0.308 6.308 28 C -0.076 4.076 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.276 0.724 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.433 -17.660 3.246 19.074 hybrid contribution 0.478 -0.778 -0.590 1.087 sum -5.955 -18.438 2.656 19.557 Atomic orbital electron populations 1.21823 0.90392 1.04319 1.03711 1.23297 0.96935 0.78929 1.02604 1.86545 1.22311 1.33785 1.84338 1.19450 0.80876 0.87308 0.71586 1.90746 1.60902 1.42505 1.49660 1.18851 0.89913 0.93157 1.32413 1.24538 1.01265 0.87267 0.94518 1.77211 0.86677 1.23901 1.26030 1.49446 1.07569 1.03475 1.50627 1.19311 0.76224 0.89884 0.98344 1.20910 1.08785 1.30418 0.91473 0.94289 1.25426 0.95485 0.95970 1.00896 1.69976 1.15522 1.38915 1.32262 0.85458 0.77767 0.77793 0.80249 1.20731 1.19556 1.20557 1.18253 0.88622 0.82801 0.95459 1.42665 1.18864 1.29781 1.38381 1.22097 0.83604 0.87533 0.81776 1.91212 1.76191 1.28625 1.38293 1.21986 0.88151 0.96812 0.89995 0.85945 1.21934 0.99661 1.01150 0.94455 1.21766 0.97971 0.97500 1.02861 1.88082 1.64577 1.34628 1.43522 1.23192 1.00282 0.88696 0.95469 0.91096 0.91532 0.88089 0.91633 0.90889 0.75041 0.95049 0.94706 0.92466 0.72424 0.88922 0.93309 0.91006 0.92587 0.90248 0.93526 0.88896 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.29 71.98 0.74 -1.01 16 2 C 0.06 1.04 6.20 71.98 0.45 1.49 16 3 O -0.35 -9.07 10.07 -57.46 -0.58 -9.64 16 4 C 0.56 17.65 7.94 70.04 0.56 18.21 16 5 O -0.55 -17.99 15.76 19.55 0.31 -17.68 16 6 C -0.33 -11.79 6.15 -20.02 -0.12 -11.91 16 7 C 0.11 3.85 11.86 85.72 1.02 4.87 16 8 N -0.32 -13.97 12.47 -56.22 -0.70 -14.67 16 9 N -0.33 -15.84 3.50 -347.31 -1.22 -17.06 16 10 C 0.28 15.43 5.26 85.64 0.45 15.88 16 11 C -0.48 -28.70 6.25 25.60 0.16 -28.54 16 12 H 0.04 2.51 7.56 -2.91 -0.02 2.49 16 13 C 0.02 1.24 5.46 84.66 0.46 1.70 16 14 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 15 Si 0.96 48.90 29.54 68.60 2.03 50.93 16 16 H -0.28 -14.61 7.11 99.48 0.71 -13.90 16 17 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 19 C 0.38 15.68 6.91 132.54 0.92 16.60 16 20 N -0.64 -22.99 4.58 -307.36 -1.41 -24.40 16 21 C 0.46 18.66 6.21 87.66 0.54 19.20 16 22 O -0.48 -24.94 11.40 15.98 0.18 -24.76 16 23 C 0.09 2.77 2.64 29.85 0.08 2.85 16 24 H 0.12 2.73 7.66 -2.39 -0.02 2.72 16 25 C -0.13 -3.43 5.61 30.59 0.17 -3.26 16 26 C -0.14 -2.60 9.13 71.98 0.66 -1.95 16 27 O -0.39 -13.57 9.58 -129.99 -1.25 -14.82 16 28 C 0.02 0.45 10.35 113.37 1.17 1.62 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.23 5.63 8.06 -2.91 -0.02 5.61 16 35 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.98 7.02 -2.39 -0.02 1.96 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.43 12.25 8.01 -92.71 -0.74 11.51 16 39 H 0.09 1.98 7.69 -2.39 -0.02 1.96 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.08 6.66 -2.39 -0.02 1.07 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 1.24 6.51 -2.39 -0.02 1.22 16 Total: -1.00 -80.32 388.79 5.17 -75.16 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.26 Total: 16.97 kcal Atomic # 6 Polarization: 28.48 SS G_CDS: 7.25 Total: 35.73 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.04 Total: -111.88 kcal Atomic # 8 Polarization: -65.56 SS G_CDS: -1.33 Total: -66.90 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -80.32 5.17 -75.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271553099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.528 kcal (2) G-P(sol) polarization free energy of solvation -80.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds