Wall clock time and date at job start Wed Apr 1 2020 00:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46806 * 2 1 4 4 O 1.42904 * 109.46973 * 179.97438 * 3 2 1 5 5 C 1.42903 * 113.99958 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47014 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00252 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99637 * 180.02562 * 6 5 4 9 9 C 1.38492 * 119.99431 * 184.53242 * 8 6 5 10 10 C 1.39227 * 126.43191 * 258.24517 * 9 8 6 11 11 C 1.46753 * 126.51288 * 359.97438 * 10 9 8 12 12 O 1.21585 * 120.00337 * 0.30076 * 11 10 9 13 13 O 1.34831 * 119.99910 * 180.30458 * 11 10 9 14 14 C 1.45199 * 117.00288 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47496 * 179.97438 * 14 13 11 16 16 C 1.41474 * 106.97288 * 180.26443 * 10 9 8 17 17 N 1.30300 * 108.16935 * 359.74345 * 16 10 9 18 18 N 1.34762 * 126.43411 * 78.07478 * 9 8 6 19 19 C 1.46506 * 125.74316 * 359.97438 * 18 9 8 20 20 C 1.50695 * 109.47620 * 274.25838 * 19 18 9 21 21 H 1.08002 * 119.99889 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00063 * 179.72745 * 20 19 18 23 23 N 1.31515 * 119.99945 * 180.27300 * 22 20 19 24 24 Si 1.86803 * 120.00155 * 0.27006 * 22 20 19 25 25 H 1.48493 * 109.46785 * 90.00217 * 24 22 20 26 26 H 1.48497 * 109.46918 * 210.00352 * 24 22 20 27 27 H 1.48505 * 109.46665 * 330.00250 * 24 22 20 28 28 H 1.08998 * 109.46714 * 60.00323 * 1 2 3 29 29 H 1.09001 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47449 * 300.00403 * 1 2 3 31 31 H 1.08996 * 109.47449 * 239.99597 * 2 1 3 32 32 H 1.09003 * 109.46958 * 119.98973 * 2 1 3 33 33 H 1.08996 * 109.47446 * 59.99595 * 3 2 1 34 34 H 1.09007 * 109.46993 * 299.99263 * 3 2 1 35 35 H 1.09000 * 109.46865 * 59.99886 * 5 4 3 36 36 H 1.08993 * 109.47215 * 299.99937 * 5 4 3 37 37 H 0.96998 * 120.00589 * 4.53150 * 8 6 5 38 38 H 1.09000 * 109.46903 * 300.00032 * 14 13 11 39 39 H 1.08998 * 109.47026 * 59.99260 * 14 13 11 40 40 H 1.09008 * 109.47064 * 299.99779 * 15 14 13 41 41 H 1.08998 * 109.47355 * 59.99747 * 15 14 13 42 42 H 1.09001 * 109.47413 * 179.97438 * 15 14 13 43 43 H 1.07998 * 125.91289 * 179.78389 * 16 10 9 44 44 H 1.08997 * 109.46694 * 154.25204 * 19 18 9 45 45 H 1.09002 * 109.46519 * 34.25869 * 19 18 9 46 46 H 0.97000 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7481 0.0001 6 6 5.5525 2.6291 0.0014 7 8 6.0741 1.5343 0.0022 8 7 6.3163 3.7395 0.0017 9 6 7.6939 3.6322 -0.0919 10 6 8.6051 3.7467 0.9546 11 6 8.2882 4.0042 2.3641 12 8 7.1308 4.1345 2.7131 13 8 9.2805 4.0964 3.2723 14 6 8.8934 4.3519 4.6482 15 6 10.1448 4.4224 5.5255 16 6 9.8950 3.5744 0.3997 17 7 9.7625 3.3670 -0.8799 18 7 8.4039 3.3943 -1.2123 19 6 7.8470 3.2021 -2.5537 20 6 7.4668 1.7555 -2.7374 21 1 7.6246 1.0497 -1.9353 22 6 6.9129 1.3341 -3.9275 23 7 6.5761 0.0727 -4.0859 24 14 6.6405 2.5548 -5.3151 25 1 7.8473 2.5991 -6.1792 26 1 5.4683 2.1323 -6.1229 27 1 6.3894 3.9032 -4.7458 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.7281 3.2895 0.8896 36 1 3.7290 3.2884 -0.8903 37 1 5.9013 4.6138 0.0674 38 1 8.3559 5.2985 4.7045 39 1 8.2485 3.5466 4.9997 40 1 10.6819 3.4755 5.4691 41 1 10.7901 5.2276 5.1741 42 1 9.8542 4.6147 6.5583 43 1 10.8279 3.6082 0.9427 44 1 8.5920 3.4796 -3.2994 45 1 6.9628 3.8282 -2.6730 46 1 6.1860 -0.2237 -4.9230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271560074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:18 Heat of formation + Delta-G solvation = -90.004607 kcal Electronic energy + Delta-G solvation = -30198.061684 eV Core-core repulsion = 25897.249006 eV Total energy + Delta-G solvation = -4300.812678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22384 -39.66449 -39.11935 -37.49999 -36.19912 -34.46936 -33.75858 -33.61738 -32.02970 -31.55759 -29.66965 -28.19803 -27.68093 -25.58611 -24.15417 -22.86574 -22.18955 -21.60539 -21.23209 -20.35495 -19.51764 -17.75805 -17.31197 -17.06594 -16.89061 -16.37516 -16.31021 -16.20137 -15.69581 -14.94525 -14.64887 -14.62174 -14.25362 -13.96212 -13.79282 -13.46247 -13.35693 -13.28113 -13.04374 -12.78983 -12.52915 -12.19925 -12.06994 -12.05695 -11.94809 -11.89044 -11.61837 -11.21292 -10.99756 -10.89066 -10.85145 -10.74876 -10.41353 -10.40672 -9.98178 -9.71492 -9.55367 -9.48728 -9.26123 -8.76517 -8.75587 -8.20832 -6.20130 -4.24418 1.62218 2.43430 2.63937 2.93458 3.01550 3.11897 3.16185 3.20698 3.38858 3.57818 4.08258 4.20749 4.84614 4.89328 4.92095 4.95967 4.97487 5.08230 5.10032 5.20404 5.23106 5.25758 5.32020 5.32892 5.43912 5.47322 5.51863 5.65094 5.70108 5.70959 5.86435 5.93647 6.03136 6.14218 6.19953 6.25010 6.32966 6.52983 6.66343 6.89205 7.15609 7.22382 7.44537 7.59461 8.04838 8.19656 8.30160 8.58331 8.96154 9.31349 10.91972 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007552 B = 0.004508 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3706.644723 B = 6209.175450 C = 9336.944043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.062 3.938 4 O -0.356 6.356 5 C 0.057 3.943 6 C 0.522 3.478 7 O -0.459 6.459 8 N -0.661 5.661 9 C 0.393 3.607 10 C -0.301 4.301 11 C 0.552 3.448 12 O -0.526 6.526 13 O -0.356 6.356 14 C 0.065 3.935 15 C -0.152 4.152 16 C 0.091 3.909 17 N -0.278 5.278 18 N -0.302 5.302 19 C 0.223 3.777 20 C -0.540 4.540 21 H 0.094 0.906 22 C 0.084 3.916 23 N -0.875 5.875 24 Si 0.866 3.134 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.267 1.267 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.193 0.807 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.013 10.892 12.890 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.015 4.015 4 O -0.274 6.274 5 C -0.024 4.024 6 C 0.307 3.693 7 O -0.326 6.326 8 N -0.318 5.318 9 C 0.164 3.836 10 C -0.317 4.317 11 C 0.399 3.601 12 O -0.416 6.416 13 O -0.274 6.274 14 C -0.009 4.009 15 C -0.209 4.209 16 C -0.096 4.096 17 N -0.099 5.099 18 N -0.080 5.080 19 C 0.104 3.896 20 C -0.578 4.578 21 H 0.112 0.888 22 C -0.121 4.121 23 N -0.511 5.511 24 Si 0.692 3.308 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.192 1.192 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.209 0.791 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.426 9.481 11.592 15.616 hybrid contribution -1.106 1.368 -0.054 1.760 sum -5.533 10.849 11.537 16.776 Atomic orbital electron populations 1.21685 0.94934 1.02113 1.01728 1.21452 0.95261 0.95617 1.03989 1.22593 0.80823 0.98215 0.99882 1.88076 1.19191 1.24821 1.95335 1.21990 0.90831 0.87195 1.02355 1.20191 0.88519 0.83993 0.76590 1.90853 1.73713 1.25588 1.42408 1.42219 1.01828 1.10352 1.77439 1.17486 0.83183 0.96347 0.86592 1.18839 0.93960 1.28713 0.90174 1.19756 0.82766 0.72475 0.85099 1.90786 1.21019 1.48688 1.81145 1.86551 1.38834 1.83176 1.18807 1.22912 0.98030 1.01517 0.78472 1.21793 0.97240 1.03470 0.98361 1.23861 0.97365 0.96924 0.91420 1.77237 0.93856 1.23395 1.15395 1.49528 1.03640 1.46266 1.08597 1.20249 0.94135 1.00275 0.74893 1.21149 1.42852 0.91089 1.02685 0.88811 1.24747 0.94633 0.95095 0.97604 1.69882 1.40744 1.14726 1.25756 0.87044 0.78851 0.81637 0.83289 1.19520 1.20497 1.19241 0.92593 0.92088 0.92748 0.90580 0.91022 0.93471 0.93241 0.90294 0.90114 0.74740 0.91553 0.91485 0.91443 0.91547 0.90558 0.79066 0.92721 0.93666 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.13 -1.57 6.30 -26.73 -0.17 -1.74 16 3 C 0.06 0.81 5.94 37.16 0.22 1.03 16 4 O -0.36 -6.46 9.88 -55.14 -0.54 -7.00 16 5 C 0.06 0.88 6.42 36.01 0.23 1.11 16 6 C 0.52 10.57 7.86 -10.99 -0.09 10.49 16 7 O -0.46 -12.01 15.25 -14.35 -0.22 -12.23 16 8 N -0.66 -11.79 4.52 -11.08 -0.05 -11.84 16 9 C 0.39 7.97 6.48 -153.42 -0.99 6.97 16 10 C -0.30 -5.65 6.15 -104.86 -0.64 -6.29 16 11 C 0.55 9.63 7.94 34.17 0.27 9.90 16 12 O -0.53 -9.79 16.09 -19.33 -0.31 -10.10 16 13 O -0.36 -5.22 10.07 -40.85 -0.41 -5.63 16 14 C 0.06 0.73 6.20 37.15 0.23 0.96 16 15 C -0.15 -1.22 10.29 37.15 0.38 -0.84 16 16 C 0.09 1.60 11.86 -16.97 -0.20 1.40 16 17 N -0.28 -5.81 12.47 30.88 0.39 -5.42 16 18 N -0.30 -6.70 3.58 -61.12 -0.22 -6.92 16 19 C 0.22 5.25 5.14 -5.19 -0.03 5.23 16 20 C -0.54 -15.30 9.42 -34.44 -0.32 -15.62 16 21 H 0.09 3.12 7.37 -52.49 -0.39 2.74 16 22 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 23 N -0.87 -26.61 13.96 55.43 0.77 -25.83 16 24 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.41 5.52 8.82 -40.82 -0.36 5.16 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.19 2.55 8.06 -52.49 -0.42 2.13 16 44 H 0.05 1.26 7.58 -51.93 -0.39 0.86 16 45 H 0.05 1.00 7.19 -51.93 -0.37 0.63 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -37.42 400.72 -7.09 -44.51 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.02 Total: 5.18 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -0.84 Total: 13.87 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.89 Total: -50.01 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.49 Total: -34.96 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.42 -7.09 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271560074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.498 kcal (2) G-P(sol) polarization free energy of solvation -37.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds