Wall clock time and date at job start Wed Apr 1 2020 00:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46806 * 2 1 4 4 O 1.42904 * 109.46973 * 179.97438 * 3 2 1 5 5 C 1.42903 * 113.99958 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47014 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00252 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99637 * 180.02562 * 6 5 4 9 9 C 1.38492 * 119.99431 * 184.53242 * 8 6 5 10 10 C 1.39227 * 126.43191 * 258.24517 * 9 8 6 11 11 C 1.46753 * 126.51288 * 359.97438 * 10 9 8 12 12 O 1.21585 * 120.00337 * 0.30076 * 11 10 9 13 13 O 1.34831 * 119.99910 * 180.30458 * 11 10 9 14 14 C 1.45199 * 117.00288 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47496 * 179.97438 * 14 13 11 16 16 C 1.41474 * 106.97288 * 180.26443 * 10 9 8 17 17 N 1.30300 * 108.16935 * 359.74345 * 16 10 9 18 18 N 1.34762 * 126.43411 * 78.07478 * 9 8 6 19 19 C 1.46506 * 125.74316 * 359.97438 * 18 9 8 20 20 C 1.50695 * 109.47620 * 274.25838 * 19 18 9 21 21 H 1.08002 * 119.99889 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00063 * 179.72745 * 20 19 18 23 23 N 1.31515 * 119.99945 * 180.27300 * 22 20 19 24 24 Si 1.86803 * 120.00155 * 0.27006 * 22 20 19 25 25 H 1.48493 * 109.46785 * 90.00217 * 24 22 20 26 26 H 1.48497 * 109.46918 * 210.00352 * 24 22 20 27 27 H 1.48505 * 109.46665 * 330.00250 * 24 22 20 28 28 H 1.08998 * 109.46714 * 60.00323 * 1 2 3 29 29 H 1.09001 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47449 * 300.00403 * 1 2 3 31 31 H 1.08996 * 109.47449 * 239.99597 * 2 1 3 32 32 H 1.09003 * 109.46958 * 119.98973 * 2 1 3 33 33 H 1.08996 * 109.47446 * 59.99595 * 3 2 1 34 34 H 1.09007 * 109.46993 * 299.99263 * 3 2 1 35 35 H 1.09000 * 109.46865 * 59.99886 * 5 4 3 36 36 H 1.08993 * 109.47215 * 299.99937 * 5 4 3 37 37 H 0.96998 * 120.00589 * 4.53150 * 8 6 5 38 38 H 1.09000 * 109.46903 * 300.00032 * 14 13 11 39 39 H 1.08998 * 109.47026 * 59.99260 * 14 13 11 40 40 H 1.09008 * 109.47064 * 299.99779 * 15 14 13 41 41 H 1.08998 * 109.47355 * 59.99747 * 15 14 13 42 42 H 1.09001 * 109.47413 * 179.97438 * 15 14 13 43 43 H 1.07998 * 125.91289 * 179.78389 * 16 10 9 44 44 H 1.08997 * 109.46694 * 154.25204 * 19 18 9 45 45 H 1.09002 * 109.46519 * 34.25869 * 19 18 9 46 46 H 0.97000 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7481 0.0001 6 6 5.5525 2.6291 0.0014 7 8 6.0741 1.5343 0.0022 8 7 6.3163 3.7395 0.0017 9 6 7.6939 3.6322 -0.0919 10 6 8.6051 3.7467 0.9546 11 6 8.2882 4.0042 2.3641 12 8 7.1308 4.1345 2.7131 13 8 9.2805 4.0964 3.2723 14 6 8.8934 4.3519 4.6482 15 6 10.1448 4.4224 5.5255 16 6 9.8950 3.5744 0.3997 17 7 9.7625 3.3670 -0.8799 18 7 8.4039 3.3943 -1.2123 19 6 7.8470 3.2021 -2.5537 20 6 7.4668 1.7555 -2.7374 21 1 7.6246 1.0497 -1.9353 22 6 6.9129 1.3341 -3.9275 23 7 6.5761 0.0727 -4.0859 24 14 6.6405 2.5548 -5.3151 25 1 7.8473 2.5991 -6.1792 26 1 5.4683 2.1323 -6.1229 27 1 6.3894 3.9032 -4.7458 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.7281 3.2895 0.8896 36 1 3.7290 3.2884 -0.8903 37 1 5.9013 4.6138 0.0674 38 1 8.3559 5.2985 4.7045 39 1 8.2485 3.5466 4.9997 40 1 10.6819 3.4755 5.4691 41 1 10.7901 5.2276 5.1741 42 1 9.8542 4.6147 6.5583 43 1 10.8279 3.6082 0.9427 44 1 8.5920 3.4796 -3.2994 45 1 6.9628 3.8282 -2.6730 46 1 6.1860 -0.2237 -4.9230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271560074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:17 Heat of formation + Delta-G solvation = -116.305919 kcal Electronic energy + Delta-G solvation = -30199.202194 eV Core-core repulsion = 25897.249006 eV Total energy + Delta-G solvation = -4301.953189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.74622 -40.97777 -40.62533 -38.77209 -37.47200 -36.08644 -35.65893 -34.61223 -33.83665 -32.55987 -31.11638 -29.89610 -29.08204 -26.62229 -25.61167 -24.41639 -23.37229 -22.89317 -22.42915 -21.76626 -21.09389 -19.34074 -19.16815 -18.56826 -18.32600 -17.54989 -17.49211 -17.41667 -17.08905 -16.53263 -16.29715 -15.97308 -15.67427 -15.37190 -15.05868 -14.81952 -14.65396 -14.56471 -14.41825 -14.33932 -13.97318 -13.52110 -13.17654 -13.09253 -13.04996 -12.90932 -12.82058 -12.69155 -12.50350 -12.31339 -12.16402 -11.85889 -11.83086 -11.79430 -11.43835 -11.41059 -11.17630 -10.89317 -10.84657 -10.67551 -10.40422 -9.77899 -8.35896 -6.48019 0.10144 0.96730 1.16891 1.30306 1.34142 1.42156 1.50740 1.68974 1.95606 2.17646 2.24655 2.89284 2.93683 3.53504 3.64600 3.86263 4.00826 4.05276 4.08868 4.12929 4.16473 4.17328 4.25146 4.36563 4.39577 4.41265 4.46688 4.53217 4.63843 4.66435 4.82796 4.92613 4.95504 5.00181 5.14014 5.16424 5.19754 5.21120 5.32956 5.42271 5.49934 5.74926 6.03880 6.17847 6.30497 6.53152 6.63845 6.84249 7.10627 7.14000 8.81370 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007552 B = 0.004508 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3706.644723 B = 6209.175450 C = 9336.944043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.056 3.944 4 O -0.406 6.406 5 C 0.060 3.940 6 C 0.515 3.485 7 O -0.534 6.534 8 N -0.647 5.647 9 C 0.379 3.621 10 C -0.308 4.308 11 C 0.556 3.444 12 O -0.541 6.541 13 O -0.353 6.353 14 C 0.055 3.945 15 C -0.144 4.144 16 C 0.108 3.892 17 N -0.309 5.309 18 N -0.326 5.326 19 C 0.233 3.767 20 C -0.542 4.542 21 H 0.025 0.975 22 C 0.020 3.980 23 N -0.935 5.935 24 Si 0.948 3.052 25 H -0.261 1.261 26 H -0.277 1.277 27 H -0.231 1.231 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.436 0.564 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.234 0.766 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 14.471 13.635 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C -0.020 4.020 4 O -0.325 6.325 5 C -0.019 4.019 6 C 0.302 3.698 7 O -0.406 6.406 8 N -0.305 5.305 9 C 0.151 3.849 10 C -0.324 4.324 11 C 0.402 3.598 12 O -0.432 6.432 13 O -0.270 6.270 14 C -0.018 4.018 15 C -0.201 4.201 16 C -0.079 4.079 17 N -0.130 5.130 18 N -0.105 5.105 19 C 0.113 3.887 20 C -0.580 4.580 21 H 0.044 0.956 22 C -0.180 4.180 23 N -0.573 5.573 24 Si 0.769 3.231 25 H -0.186 1.186 26 H -0.202 1.202 27 H -0.154 1.154 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.278 0.722 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.251 0.749 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.229 13.139 12.383 18.797 hybrid contribution -0.784 0.190 -0.045 0.808 sum -6.013 13.329 12.339 19.133 Atomic orbital electron populations 1.21639 0.92040 1.02944 1.02978 1.21515 0.97724 0.95454 1.02064 1.22861 0.78485 0.98650 1.01965 1.88033 1.22019 1.26664 1.95794 1.22192 0.87058 0.86988 1.05696 1.21268 0.90676 0.83238 0.74574 1.90832 1.75311 1.28369 1.46054 1.42211 1.01030 1.11093 1.76203 1.17923 0.84345 0.95984 0.86656 1.19144 0.94195 1.28166 0.90883 1.19557 0.82970 0.72197 0.85032 1.90766 1.21684 1.49369 1.81412 1.86540 1.37820 1.82573 1.20056 1.23304 0.99970 1.01686 0.76856 1.21820 0.95713 1.03701 0.98894 1.24549 0.98571 0.94327 0.90420 1.77178 0.93616 1.25026 1.17192 1.49365 1.04372 1.48202 1.08549 1.19977 0.95140 0.97152 0.76412 1.21117 1.43116 0.92763 1.01019 0.95647 1.25848 0.93794 0.97387 1.00930 1.70088 1.42409 1.17846 1.26971 0.85744 0.78935 0.79863 0.78592 1.18610 1.20191 1.15426 0.91760 0.91564 0.90974 0.93438 0.92145 0.90490 0.91735 0.85988 0.87108 0.72170 0.90699 0.92106 0.91634 0.90804 0.88016 0.74943 0.91720 0.91468 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.13 -3.31 6.30 30.60 0.19 -3.11 16 3 C 0.06 1.41 5.94 71.98 0.43 1.84 16 4 O -0.41 -14.90 9.88 -129.94 -1.28 -16.18 16 5 C 0.06 1.79 6.42 71.24 0.46 2.24 16 6 C 0.51 21.22 7.86 87.66 0.69 21.91 16 7 O -0.53 -29.71 15.25 16.03 0.24 -29.47 16 8 N -0.65 -22.82 4.52 -307.36 -1.39 -24.21 16 9 C 0.38 15.44 6.48 132.54 0.86 16.30 16 10 C -0.31 -11.44 6.15 -20.02 -0.12 -11.56 16 11 C 0.56 18.83 7.94 70.05 0.56 19.38 16 12 O -0.54 -19.59 16.09 19.56 0.31 -19.28 16 13 O -0.35 -9.75 10.07 -57.44 -0.58 -10.33 16 14 C 0.06 1.14 6.20 71.98 0.45 1.59 16 15 C -0.14 -1.93 10.29 71.98 0.74 -1.19 16 16 C 0.11 3.71 11.86 85.72 1.02 4.73 16 17 N -0.31 -12.98 12.47 -56.23 -0.70 -13.69 16 18 N -0.33 -14.63 3.58 -347.30 -1.24 -15.88 16 19 C 0.23 10.97 5.14 85.63 0.44 11.41 16 20 C -0.54 -32.11 9.42 25.60 0.24 -31.87 16 21 H 0.03 1.82 7.37 -2.91 -0.02 1.80 16 22 C 0.02 1.16 5.47 84.65 0.46 1.62 16 23 N -0.93 -59.77 13.96 21.45 0.30 -59.47 16 24 Si 0.95 41.20 27.47 68.60 1.88 43.08 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.23 -8.64 6.54 99.48 0.65 -7.98 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.11 2.60 8.14 -2.39 -0.02 2.59 16 37 H 0.44 10.90 8.82 -92.71 -0.82 10.08 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.23 5.67 8.06 -2.91 -0.02 5.64 16 44 H 0.06 2.91 7.58 -2.39 -0.02 2.89 16 45 H 0.07 2.85 7.19 -2.39 -0.02 2.83 16 46 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -90.23 400.72 4.79 -85.44 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.12 Total: 28.35 kcal Atomic # 6 Polarization: 24.50 SS G_CDS: 7.12 Total: 31.62 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.03 Total: -113.25 kcal Atomic # 8 Polarization: -73.94 SS G_CDS: -1.30 Total: -75.25 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.88 Total: 43.08 kcal Total: -90.23 4.79 -85.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271560074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.864 kcal (2) G-P(sol) polarization free energy of solvation -90.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds