Wall clock time and date at job start Wed Apr 1 2020 00:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 O 1.42908 * 109.46759 * 299.99606 * 3 2 1 5 5 C 1.53002 * 109.47412 * 239.99853 * 2 1 3 6 6 O 1.42894 * 109.47295 * 184.99689 * 5 2 1 7 7 N 1.46496 * 109.47477 * 119.99618 * 2 1 3 8 8 C 1.34775 * 119.99986 * 60.00218 * 7 2 1 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 2 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47574 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99892 * 24 22 20 27 27 H 1.48499 * 109.47067 * 329.99541 * 24 22 20 28 28 H 1.08998 * 109.47502 * 299.99948 * 1 2 3 29 29 H 1.08999 * 109.47279 * 60.00357 * 1 2 3 30 30 H 1.09004 * 109.47030 * 180.02562 * 1 2 3 31 31 H 1.08989 * 109.47533 * 59.99668 * 3 2 1 32 32 H 1.09002 * 109.47337 * 180.02562 * 3 2 1 33 33 H 0.96697 * 113.99675 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47105 * 305.00028 * 5 2 1 35 35 H 1.08997 * 109.46944 * 64.99737 * 5 2 1 36 36 H 0.96700 * 114.00332 * 179.97438 * 6 5 2 37 37 H 0.97000 * 120.00232 * 240.00259 * 7 2 1 38 38 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 39 39 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 40 40 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 41 41 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 43 43 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 44 44 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 45 45 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 46 46 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5636 2.1161 -1.1669 5 6 2.0400 -0.7213 -1.2492 6 8 3.4641 -0.8237 -1.1920 7 7 2.0183 -0.6905 1.1962 8 6 1.6928 -1.9808 1.4095 9 8 0.9934 -2.5717 0.6095 10 7 2.1417 -2.6159 2.5102 11 6 1.8041 -3.9522 2.7314 12 7 1.0477 -4.5914 1.8547 13 6 0.7010 -5.8529 2.0277 14 6 1.1227 -6.5597 3.1363 15 6 1.9232 -5.9311 4.0799 16 6 2.2732 -4.6044 3.8716 17 8 3.0553 -3.9478 4.7695 18 6 3.4876 -4.6854 5.9147 19 6 4.3513 -3.7877 6.8031 20 6 4.8066 -4.5653 8.0110 21 1 4.5094 -5.5965 8.1330 22 6 5.6018 -3.9602 8.9610 23 7 5.9633 -2.7043 8.8127 24 14 6.1669 -4.9241 10.4579 25 1 7.4601 -5.5899 10.1587 26 1 6.3406 -3.9986 11.6061 27 1 5.1491 -5.9503 10.7989 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6766 1.9564 0.8898 32 1 3.1299 1.4426 -0.0005 33 1 1.8485 3.0378 -1.2328 34 1 1.6054 -1.7198 -1.2951 35 1 1.7516 -0.1584 -2.1369 36 1 3.8572 -1.2716 -1.9536 37 1 2.5760 -0.2190 1.8346 38 1 2.6994 -2.1445 3.1487 39 1 0.0786 -6.3396 1.2913 40 1 0.8325 -7.5916 3.2678 41 1 2.2665 -6.4622 4.9553 42 1 4.0718 -5.5473 5.5924 43 1 2.6182 -5.0255 6.4773 44 1 5.2206 -3.4479 6.2404 45 1 3.7673 -2.9256 7.1254 46 1 6.5231 -2.2787 9.4808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276040590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:25 Heat of formation + Delta-G solvation = -115.187975 kcal Electronic energy + Delta-G solvation = -29643.829803 eV Core-core repulsion = 25341.925092 eV Total energy + Delta-G solvation = -4301.904711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98049 -39.99021 -38.21101 -37.65649 -36.36360 -35.08974 -34.48282 -33.46762 -31.79394 -31.22244 -30.27367 -28.78401 -26.80269 -26.00482 -25.40335 -23.79469 -22.80068 -21.53728 -20.65729 -19.84810 -18.65582 -18.09251 -17.90608 -17.35781 -17.28693 -16.16451 -16.05254 -15.84324 -15.64851 -15.30161 -15.07720 -14.81494 -14.59879 -14.48141 -14.00862 -13.87195 -13.73123 -13.43095 -13.02981 -12.80273 -12.50840 -12.40198 -12.20480 -11.98967 -11.92235 -11.89311 -11.06033 -10.99024 -10.94616 -10.69312 -10.67657 -10.43761 -10.27436 -10.03297 -9.85892 -9.74832 -9.40445 -9.20685 -9.05850 -8.97363 -8.52120 -7.59015 -6.17963 -4.22773 1.31282 1.50176 2.37001 3.22555 3.26613 3.28765 3.30992 3.56583 3.71085 4.04577 4.10014 4.18367 4.34007 4.62485 4.63001 4.75736 4.99611 5.00002 5.11762 5.18968 5.25602 5.30281 5.43734 5.49762 5.51299 5.62833 5.69355 5.82021 5.88383 5.91833 6.08945 6.17995 6.24223 6.41682 6.46905 6.56169 6.63800 6.86920 7.21952 7.36773 7.52334 7.53262 7.65363 7.77556 7.89189 8.14719 8.29903 8.68781 8.82490 9.42147 10.93508 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.002545 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.417092 B =10999.226954 C =12797.985913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.204 3.796 3 C 0.078 3.922 4 O -0.565 6.565 5 C 0.066 3.934 6 O -0.570 6.570 7 N -0.731 5.731 8 C 0.707 3.293 9 O -0.534 6.534 10 N -0.661 5.661 11 C 0.349 3.651 12 N -0.441 5.441 13 C 0.076 3.924 14 C -0.164 4.164 15 C -0.147 4.147 16 C 0.064 3.936 17 O -0.317 6.317 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.384 0.616 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.377 0.623 37 H 0.397 0.603 38 H 0.420 0.580 39 H 0.155 0.845 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 4.737 -18.501 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.117 3.883 3 C -0.001 4.001 4 O -0.370 6.370 5 C -0.013 4.013 6 O -0.375 6.375 7 N -0.388 5.388 8 C 0.407 3.593 9 O -0.406 6.406 10 N -0.310 5.310 11 C 0.115 3.885 12 N -0.155 5.155 13 C -0.081 4.081 14 C -0.186 4.186 15 C -0.173 4.173 16 C 0.012 3.988 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.223 0.777 37 H 0.230 0.770 38 H 0.257 0.743 39 H 0.173 0.827 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.223 4.815 -19.474 22.515 hybrid contribution 1.626 -0.424 2.051 2.651 sum -8.596 4.391 -17.423 19.918 Atomic orbital electron populations 1.22149 0.92817 1.04534 1.02399 1.19954 0.94568 0.89948 0.83811 1.22150 0.98435 0.91526 0.87948 1.86390 1.77458 1.29280 1.43840 1.22607 0.81237 1.00921 0.96530 1.86401 1.20217 1.82180 1.48701 1.44897 1.56971 1.10989 1.25979 1.15756 0.80677 0.81073 0.81809 1.90945 1.39712 1.65158 1.44789 1.42496 1.53827 1.09717 1.24964 1.17480 0.96265 0.85029 0.89728 1.67626 1.11410 1.09790 1.26722 1.22400 0.99350 0.89309 0.96995 1.21873 0.99877 1.01342 0.95460 1.21578 1.00751 0.93439 1.01563 1.19548 0.95733 0.92245 0.91258 1.86099 1.62677 1.41172 1.32980 1.23379 0.97978 0.96381 0.83016 1.19120 0.94229 0.95049 0.92637 1.20951 1.32059 0.98139 1.05447 0.92338 1.24980 0.95812 0.94965 0.98358 1.69964 1.35959 1.11249 1.35541 0.86484 0.79152 0.79713 0.82033 1.20459 1.21023 1.19745 0.92268 0.91002 0.89741 0.92972 0.92067 0.76882 0.91113 0.92561 0.77678 0.76962 0.74313 0.82734 0.84896 0.83811 0.92982 0.92978 0.95375 0.95389 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.26 37.15 0.31 -1.47 16 2 C 0.20 2.21 0.67 -131.82 -0.09 2.12 16 3 C 0.08 0.65 5.92 37.16 0.22 0.87 16 4 O -0.56 -4.38 12.23 -35.23 -0.43 -4.81 16 5 C 0.07 0.75 5.56 37.16 0.21 0.96 16 6 O -0.57 -6.45 12.96 -35.23 -0.46 -6.91 16 7 N -0.73 -8.50 4.88 -52.42 -0.26 -8.76 16 8 C 0.71 10.60 7.95 -86.92 -0.69 9.91 16 9 O -0.53 -9.32 10.85 5.29 0.06 -9.26 16 10 N -0.66 -10.04 5.40 -15.67 -0.08 -10.12 16 11 C 0.35 5.90 7.45 -154.43 -1.15 4.76 16 12 N -0.44 -7.45 7.87 -12.22 -0.10 -7.55 16 13 C 0.08 1.05 11.17 -17.56 -0.20 0.85 16 14 C -0.16 -2.08 10.10 -39.44 -0.40 -2.48 16 15 C -0.15 -2.17 9.14 -39.17 -0.36 -2.52 16 16 C 0.06 1.08 6.72 -38.92 -0.26 0.82 16 17 O -0.32 -5.89 9.39 -19.69 -0.18 -6.08 16 18 C 0.07 1.32 4.70 37.16 0.17 1.49 16 19 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 21 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 24 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 30 H 0.08 1.14 6.16 -51.93 -0.32 0.82 16 31 H 0.05 0.37 8.14 -51.94 -0.42 -0.06 16 32 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 33 H 0.38 1.26 9.12 45.56 0.42 1.68 16 34 H 0.07 0.97 6.32 -51.93 -0.33 0.64 16 35 H 0.06 0.60 7.54 -51.93 -0.39 0.20 16 36 H 0.38 2.88 9.12 45.56 0.42 3.29 16 37 H 0.40 3.78 8.49 -40.82 -0.35 3.43 16 38 H 0.42 5.74 8.06 -40.82 -0.33 5.41 16 39 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.14 1.97 6.44 -52.49 -0.34 1.63 16 42 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 43 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -34.55 382.13 -7.68 -42.23 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.90 Total: 11.68 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.80 Total: 2.97 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.30 Total: -51.26 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -1.01 Total: -27.05 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.55 -7.68 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276040590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.960 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds