Wall clock time and date at job start Wed Apr 1 2020 00:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 O 1.42908 * 109.46759 * 299.99606 * 3 2 1 5 5 C 1.53002 * 109.47412 * 239.99853 * 2 1 3 6 6 O 1.42894 * 109.47295 * 184.99689 * 5 2 1 7 7 N 1.46496 * 109.47477 * 119.99618 * 2 1 3 8 8 C 1.34775 * 119.99986 * 60.00218 * 7 2 1 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 2 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47574 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99892 * 24 22 20 27 27 H 1.48499 * 109.47067 * 329.99541 * 24 22 20 28 28 H 1.08998 * 109.47502 * 299.99948 * 1 2 3 29 29 H 1.08999 * 109.47279 * 60.00357 * 1 2 3 30 30 H 1.09004 * 109.47030 * 180.02562 * 1 2 3 31 31 H 1.08989 * 109.47533 * 59.99668 * 3 2 1 32 32 H 1.09002 * 109.47337 * 180.02562 * 3 2 1 33 33 H 0.96697 * 113.99675 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47105 * 305.00028 * 5 2 1 35 35 H 1.08997 * 109.46944 * 64.99737 * 5 2 1 36 36 H 0.96700 * 114.00332 * 179.97438 * 6 5 2 37 37 H 0.97000 * 120.00232 * 240.00259 * 7 2 1 38 38 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 39 39 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 40 40 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 41 41 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 43 43 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 44 44 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 45 45 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 46 46 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5636 2.1161 -1.1669 5 6 2.0400 -0.7213 -1.2492 6 8 3.4641 -0.8237 -1.1920 7 7 2.0183 -0.6905 1.1962 8 6 1.6928 -1.9808 1.4095 9 8 0.9934 -2.5717 0.6095 10 7 2.1417 -2.6159 2.5102 11 6 1.8041 -3.9522 2.7314 12 7 1.0477 -4.5914 1.8547 13 6 0.7010 -5.8529 2.0277 14 6 1.1227 -6.5597 3.1363 15 6 1.9232 -5.9311 4.0799 16 6 2.2732 -4.6044 3.8716 17 8 3.0553 -3.9478 4.7695 18 6 3.4876 -4.6854 5.9147 19 6 4.3513 -3.7877 6.8031 20 6 4.8066 -4.5653 8.0110 21 1 4.5094 -5.5965 8.1330 22 6 5.6018 -3.9602 8.9610 23 7 5.9633 -2.7043 8.8127 24 14 6.1669 -4.9241 10.4579 25 1 7.4601 -5.5899 10.1587 26 1 6.3406 -3.9986 11.6061 27 1 5.1491 -5.9503 10.7989 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6766 1.9564 0.8898 32 1 3.1299 1.4426 -0.0005 33 1 1.8485 3.0378 -1.2328 34 1 1.6054 -1.7198 -1.2951 35 1 1.7516 -0.1584 -2.1369 36 1 3.8572 -1.2716 -1.9536 37 1 2.5760 -0.2190 1.8346 38 1 2.6994 -2.1445 3.1487 39 1 0.0786 -6.3396 1.2913 40 1 0.8325 -7.5916 3.2678 41 1 2.2665 -6.4622 4.9553 42 1 4.0718 -5.5473 5.5924 43 1 2.6182 -5.0255 6.4773 44 1 5.2206 -3.4479 6.2404 45 1 3.7673 -2.9256 7.1254 46 1 6.5231 -2.2787 9.4808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276040590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:25 Heat of formation + Delta-G solvation = -144.279287 kcal Electronic energy + Delta-G solvation = -29645.091297 eV Core-core repulsion = 25341.925092 eV Total energy + Delta-G solvation = -4303.166205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13180 -41.08604 -39.32755 -38.79020 -37.12003 -36.07714 -35.62115 -35.41670 -32.92882 -32.59154 -31.75232 -30.00577 -27.59228 -27.15425 -26.86009 -25.12847 -24.04576 -22.95821 -22.02156 -20.84294 -19.78905 -19.33818 -18.79917 -18.51632 -18.14046 -17.98227 -17.28411 -17.17132 -16.57653 -16.50057 -16.40444 -15.99644 -15.82214 -15.47747 -15.17982 -15.05701 -14.82401 -14.40430 -14.33134 -14.11878 -13.80901 -13.63324 -13.36408 -13.27041 -13.11600 -12.80972 -12.77446 -12.73442 -12.43342 -11.85815 -11.80051 -11.70062 -11.61762 -11.43161 -11.35824 -11.01037 -10.77945 -10.60317 -10.38713 -10.14077 -10.09355 -8.79640 -8.25338 -6.37770 0.17726 0.32883 1.34121 1.42783 1.43716 1.54625 2.13025 2.13685 2.45107 2.78793 2.94304 3.09960 3.22965 3.46394 3.58786 3.83701 3.88754 3.93087 4.06007 4.16155 4.26626 4.30662 4.35269 4.50041 4.52542 4.55831 4.65913 4.72989 4.75933 4.82467 4.91936 4.98902 5.15951 5.24794 5.32291 5.36730 5.51159 5.51408 5.55628 5.71943 5.82509 6.08786 6.37130 6.72019 6.77142 6.79540 6.87831 7.18022 7.32249 7.56558 8.87335 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.002545 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.417092 B =10999.226954 C =12797.985913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.195 3.805 3 C 0.088 3.912 4 O -0.576 6.576 5 C 0.073 3.927 6 O -0.581 6.581 7 N -0.719 5.719 8 C 0.702 3.298 9 O -0.561 6.561 10 N -0.662 5.662 11 C 0.331 3.669 12 N -0.469 5.469 13 C 0.075 3.925 14 C -0.149 4.149 15 C -0.147 4.147 16 C 0.038 3.962 17 O -0.330 6.330 18 C 0.084 3.916 19 C 0.030 3.970 20 C -0.544 4.544 21 H 0.071 0.929 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.404 0.596 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.391 0.609 37 H 0.407 0.593 38 H 0.423 0.577 39 H 0.185 0.815 40 H 0.175 0.825 41 H 0.156 0.844 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 3.469 -18.417 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.108 3.892 3 C 0.009 3.991 4 O -0.385 6.385 5 C -0.006 4.006 6 O -0.388 6.388 7 N -0.377 5.377 8 C 0.402 3.598 9 O -0.435 6.435 10 N -0.312 5.312 11 C 0.098 3.902 12 N -0.184 5.184 13 C -0.082 4.082 14 C -0.170 4.170 15 C -0.174 4.174 16 C -0.013 4.013 17 O -0.243 6.243 18 C 0.010 3.990 19 C -0.007 4.007 20 C -0.582 4.582 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.794 3.206 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.184 1.184 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.255 0.745 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.240 0.760 37 H 0.242 0.758 38 H 0.260 0.740 39 H 0.202 0.798 40 H 0.192 0.808 41 H 0.174 0.826 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.671 3.580 -19.410 22.437 hybrid contribution 1.701 -0.050 1.880 2.535 sum -8.971 3.529 -17.530 20.005 Atomic orbital electron populations 1.22042 0.93056 1.02853 1.03088 1.20149 0.94481 0.91500 0.83060 1.21988 0.98237 0.89952 0.88922 1.86340 1.77644 1.30987 1.43486 1.22478 0.81217 0.99590 0.97320 1.86363 1.20089 1.82444 1.49940 1.44832 1.56471 1.09945 1.26413 1.15930 0.80525 0.81846 0.81471 1.90922 1.40946 1.66052 1.45588 1.42538 1.53879 1.09607 1.25155 1.17671 0.96823 0.85656 0.90023 1.67679 1.12092 1.11403 1.27265 1.23046 0.98753 0.88482 0.97911 1.22257 0.97961 1.02876 0.93856 1.21874 1.00537 0.92583 1.02363 1.19696 0.96906 0.93422 0.91299 1.86027 1.63745 1.41506 1.33048 1.22942 0.97737 0.95173 0.83186 1.18939 0.93683 0.94991 0.93078 1.21404 1.31907 0.98844 1.06043 0.91103 1.25959 0.95936 0.95908 1.01687 1.70100 1.36860 1.13074 1.36812 0.85364 0.78971 0.78357 0.77874 1.19742 1.20902 1.18357 0.91698 0.90098 0.92504 0.91323 0.92106 0.74518 0.93856 0.91588 0.76010 0.75751 0.73969 0.79788 0.80792 0.82620 0.91871 0.91818 0.98092 0.98021 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.26 71.98 0.59 -2.76 16 2 C 0.19 4.15 0.67 3.60 0.00 4.15 16 3 C 0.09 1.34 5.92 71.98 0.43 1.77 16 4 O -0.58 -7.88 12.23 -148.98 -1.82 -9.71 16 5 C 0.07 1.67 5.56 71.98 0.40 2.07 16 6 O -0.58 -13.00 12.96 -148.98 -1.93 -14.93 16 7 N -0.72 -16.89 4.88 -438.02 -2.14 -19.03 16 8 C 0.70 21.67 7.95 179.06 1.42 23.09 16 9 O -0.56 -20.23 10.85 -4.00 -0.04 -20.27 16 10 N -0.66 -20.80 5.40 -321.76 -1.74 -22.53 16 11 C 0.33 11.33 7.45 132.98 0.99 12.32 16 12 N -0.47 -15.73 7.87 -192.58 -1.52 -17.24 16 13 C 0.07 1.91 11.17 84.63 0.95 2.86 16 14 C -0.15 -3.31 10.10 22.36 0.23 -3.08 16 15 C -0.15 -4.06 9.14 22.53 0.21 -3.86 16 16 C 0.04 1.27 6.72 22.70 0.15 1.42 16 17 O -0.33 -12.47 9.39 -93.36 -0.88 -13.35 16 18 C 0.08 3.32 4.70 71.98 0.34 3.66 16 19 C 0.03 1.54 5.34 29.85 0.16 1.70 16 20 C -0.54 -29.15 9.11 25.60 0.23 -28.91 16 21 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 22 C 0.00 0.21 5.46 84.65 0.46 0.67 16 23 N -0.93 -54.44 13.29 21.45 0.28 -54.16 16 24 Si 0.97 42.04 29.54 68.60 2.03 44.07 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.60 7.68 -2.39 -0.02 1.58 16 30 H 0.06 1.59 6.16 -2.39 -0.01 1.57 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.95 7.82 -2.39 -0.02 0.93 16 33 H 0.40 1.78 9.12 -74.06 -0.68 1.10 16 34 H 0.04 1.24 6.32 -2.39 -0.02 1.22 16 35 H 0.07 1.37 7.54 -2.39 -0.02 1.35 16 36 H 0.39 5.87 9.12 -74.06 -0.68 5.20 16 37 H 0.41 7.74 8.49 -92.71 -0.79 6.95 16 38 H 0.42 12.15 8.06 -92.71 -0.75 11.40 16 39 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.16 3.87 6.44 -2.91 -0.02 3.85 16 42 H 0.06 2.33 7.70 -2.39 -0.02 2.32 16 43 H 0.06 2.35 7.70 -2.39 -0.02 2.33 16 44 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -75.92 382.13 -3.01 -78.93 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -1.82 Total: 33.12 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.56 Total: 15.10 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -5.10 Total: -112.97 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -4.67 Total: -58.25 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -75.92 -3.01 -78.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276040590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.354 kcal (2) G-P(sol) polarization free energy of solvation -75.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds