Wall clock time and date at job start Tue Mar 31 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37102 * 119.99278 * 2 1 4 4 H 1.08005 * 119.99525 * 205.68756 * 3 2 1 5 5 C 1.38947 * 120.00324 * 25.69471 * 3 2 1 6 6 N 1.31408 * 119.99852 * 10.91648 * 5 3 2 7 7 Si 1.86800 * 119.99855 * 190.91269 * 5 3 2 8 8 H 1.48490 * 109.47341 * 59.99942 * 7 5 3 9 9 H 1.48502 * 109.46962 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47130 * 299.99854 * 7 5 3 11 11 C 1.34771 * 120.00416 * 180.02562 * 2 1 3 12 12 O 1.21287 * 120.00118 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99864 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.47245 * 84.99970 * 13 11 2 15 15 O 1.42901 * 109.46920 * 324.99866 * 13 11 2 16 16 C 1.52995 * 109.47005 * 205.00183 * 13 11 2 17 17 N 1.46501 * 109.47309 * 185.00226 * 16 13 11 18 18 C 1.33927 * 124.21111 * 90.01522 * 17 16 13 19 19 O 1.21540 * 123.80189 * 0.02562 * 18 17 16 20 20 N 1.34822 * 112.39698 * 180.02562 * 18 17 16 21 21 C 1.46427 * 106.22310 * 0.02562 * 20 18 17 22 22 C 1.53052 * 111.40191 * 120.28703 * 21 20 18 23 23 C 1.54497 * 106.27148 * 122.21414 * 22 21 20 24 24 C 1.54964 * 104.21521 * 336.51131 * 23 22 21 25 25 C 1.53448 * 111.16442 * 240.11601 * 21 20 18 26 26 C 1.35055 * 124.20786 * 270.02749 * 17 16 13 27 27 O 1.21239 * 127.34781 * 359.97438 * 26 17 16 28 28 H 1.09003 * 109.46919 * 264.78462 * 1 2 3 29 29 H 1.08994 * 109.47581 * 24.78807 * 1 2 3 30 30 H 1.09003 * 109.47064 * 144.79050 * 1 2 3 31 31 H 0.97006 * 119.99808 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47354 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47094 * 300.00437 * 14 13 11 34 34 H 1.09004 * 109.46554 * 59.99592 * 14 13 11 35 35 H 0.96694 * 114.00372 * 300.00107 * 15 13 11 36 36 H 1.09002 * 109.47760 * 64.99729 * 16 13 11 37 37 H 1.09002 * 109.47232 * 304.99654 * 16 13 11 38 38 H 0.96998 * 126.88877 * 180.02562 * 20 18 17 39 39 H 1.09003 * 110.09756 * 241.42221 * 22 21 20 40 40 H 1.09002 * 110.09496 * 3.01472 * 22 21 20 41 41 H 1.09007 * 110.47747 * 95.18872 * 23 22 21 42 42 H 1.08994 * 110.48304 * 217.82061 * 23 22 21 43 43 H 1.09005 * 110.73164 * 279.14586 * 24 23 22 44 44 H 1.08998 * 110.73860 * 155.82755 * 24 23 22 45 45 H 1.08994 * 110.52729 * 19.57264 * 25 21 20 46 46 H 1.09007 * 110.52380 * 142.32835 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1504 1.2337 -0.4055 5 6 1.5586 2.3312 0.5217 6 7 0.4399 2.2389 1.2049 7 14 2.3534 4.0000 0.2520 8 1 2.4443 4.2755 -1.2043 9 1 1.5319 5.0509 0.9048 10 1 3.7163 4.0003 0.8418 11 6 2.1390 -1.1671 -0.0005 12 8 3.3518 -1.1670 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 6 1.0222 -2.8502 -1.4391 15 8 0.1913 -2.3335 0.7707 16 6 2.2625 -3.5679 0.6076 17 7 1.5781 -4.8586 0.4981 18 6 1.7016 -5.6904 -0.5443 19 8 2.3981 -5.4610 -1.5136 20 7 0.9662 -6.8108 -0.3975 21 6 0.2863 -6.6876 0.8935 22 6 -1.2348 -6.7287 0.7299 23 6 -1.7316 -7.9085 1.5949 24 6 -0.4964 -8.8361 1.7186 25 6 0.6790 -7.8316 1.8379 26 6 0.7439 -5.3577 1.4357 27 8 0.4297 -4.8450 2.4885 28 1 -0.3633 -0.0934 1.0234 29 1 -0.3634 0.9329 -0.4308 30 1 -0.3633 -0.8397 -0.5925 31 1 0.0269 3.0374 1.5694 32 1 0.4776 -3.7943 -1.4400 33 1 0.3974 -2.0696 -1.8731 34 1 1.9332 -2.9559 -2.0282 35 1 0.3460 -2.0943 1.6947 36 1 2.4479 -3.3430 1.6579 37 1 3.2112 -3.6133 0.0728 38 1 0.9006 -7.5502 -1.0218 39 1 -1.6748 -5.7954 1.0812 40 1 -1.4947 -6.8955 -0.3155 41 1 -2.0436 -7.5557 2.5780 42 1 -2.5505 -8.4280 1.0974 43 1 -0.3871 -9.4541 0.8274 44 1 -0.5669 -9.4555 2.6128 45 1 1.6110 -8.2933 1.5120 46 1 0.7689 -7.4682 2.8617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276672600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:56 Heat of formation + Delta-G solvation = -110.811478 kcal Electronic energy + Delta-G solvation = -31929.314003 eV Core-core repulsion = 27627.599071 eV Total energy + Delta-G solvation = -4301.714932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.75273 -39.42302 -38.72134 -37.87873 -36.22802 -35.56230 -34.83073 -33.72540 -31.51316 -30.80969 -29.31897 -28.46569 -27.14152 -26.18583 -24.89165 -23.54352 -22.60926 -21.29953 -20.97575 -20.26329 -19.11546 -18.05447 -17.34284 -16.88089 -16.70921 -16.49987 -16.10179 -15.28897 -15.06357 -14.98428 -14.95033 -14.66003 -14.53875 -14.28827 -13.97009 -13.65611 -13.37851 -13.08574 -12.63658 -12.45793 -12.06914 -12.00263 -11.87255 -11.78589 -11.58372 -11.57308 -11.51441 -11.47184 -11.28691 -11.04053 -10.97217 -10.90858 -10.70670 -10.45341 -10.33776 -10.13841 -10.09050 -9.61738 -9.42218 -8.96082 -8.16502 -7.64118 -6.32758 -3.91628 1.61145 2.19071 2.98733 3.04622 3.17643 3.24029 3.28069 3.75210 3.77694 4.05354 4.08730 4.11570 4.55792 4.66455 4.80486 4.85195 4.93917 4.97453 5.02373 5.05593 5.15176 5.18162 5.34178 5.42595 5.47562 5.56831 5.63329 5.66066 5.73778 5.75554 5.89314 5.95989 5.97561 6.12601 6.17266 6.49930 6.67152 6.74214 7.00700 7.07523 7.36072 7.40205 7.54816 7.89460 8.11073 8.15576 8.47669 9.14833 9.39968 9.94084 10.69967 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.003149 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.597380 B = 8889.781112 C = 9401.895917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.427 5.427 3 C -0.311 4.311 4 H 0.097 0.903 5 C 0.034 3.966 6 N -0.875 5.875 7 Si 0.927 3.073 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.272 1.272 11 C 0.420 3.580 12 O -0.589 6.589 13 C 0.113 3.887 14 C -0.125 4.125 15 O -0.546 6.546 16 C 0.110 3.890 17 N -0.567 5.567 18 C 0.701 3.299 19 O -0.535 6.535 20 N -0.721 5.721 21 C 0.116 3.884 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.121 4.121 26 C 0.537 3.463 27 O -0.457 6.457 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.269 0.731 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.380 0.620 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.437 0.563 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -21.500 0.694 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.144 5.144 3 C -0.439 4.439 4 H 0.115 0.885 5 C -0.170 4.170 6 N -0.513 5.513 7 Si 0.754 3.246 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.206 3.794 12 O -0.475 6.475 13 C 0.068 3.932 14 C -0.183 4.183 15 O -0.353 6.353 16 C -0.011 4.011 17 N -0.313 5.313 18 C 0.402 3.598 19 O -0.408 6.408 20 N -0.386 5.386 21 C 0.025 3.975 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.159 4.159 26 C 0.323 3.677 27 O -0.325 6.325 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.229 0.771 36 H 0.116 0.884 37 H 0.134 0.866 38 H 0.281 0.719 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.129 -20.945 0.309 21.825 hybrid contribution 0.405 0.817 0.208 0.935 sum -5.724 -20.128 0.518 20.933 Atomic orbital electron populations 1.21603 0.80215 0.99535 1.01035 1.43569 1.06057 1.04281 1.60452 1.19641 1.01409 0.84492 1.38399 0.88537 1.25385 0.96478 1.00195 0.94960 1.69999 1.18719 1.30012 1.32606 0.85984 0.79112 0.80815 0.78700 1.19854 1.20893 1.19727 1.20339 0.88055 0.85156 0.85844 1.90534 1.13608 1.86856 1.56497 1.21569 0.85313 0.92959 0.93391 1.21704 1.02683 1.01118 0.92762 1.86564 1.30221 1.92522 1.25996 1.22204 0.96554 0.78543 1.03836 1.46424 1.44529 1.20457 1.19843 1.15993 0.80532 0.80523 0.82719 1.91032 1.42265 1.76737 1.30722 1.45552 1.49378 1.21846 1.21855 1.21501 0.95658 0.95092 0.85256 1.22321 0.90301 1.01029 1.01997 1.22435 0.97788 0.95282 1.00501 1.22556 0.93802 0.97132 1.02408 1.22596 0.99797 0.94111 0.99413 1.20450 0.77574 0.86092 0.83612 1.90784 1.55646 1.65038 1.21042 0.92912 0.91904 0.94070 0.92117 0.92896 0.91406 0.90239 0.77083 0.88385 0.86579 0.71887 0.89580 0.89694 0.90640 0.90785 0.91055 0.90578 0.89851 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.77 7.26 59.85 0.43 3.20 16 2 N -0.43 -11.03 3.01 -122.19 -0.37 -11.39 16 3 C -0.31 -8.75 9.22 -14.93 -0.14 -8.89 16 4 H 0.10 2.83 7.46 -52.48 -0.39 2.44 16 5 C 0.03 0.90 5.07 -17.47 -0.09 0.82 16 6 N -0.87 -23.41 10.82 55.50 0.60 -22.81 16 7 Si 0.93 20.89 29.57 -169.99 -5.03 15.86 16 8 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 11 C 0.42 10.25 6.56 -10.99 -0.07 10.18 16 12 O -0.59 -16.19 15.71 5.55 0.09 -16.10 16 13 C 0.11 2.18 0.73 -91.77 -0.07 2.11 16 14 C -0.13 -2.28 7.43 37.16 0.28 -2.00 16 15 O -0.55 -9.98 9.15 -35.23 -0.32 -10.31 16 16 C 0.11 1.93 4.58 -4.04 -0.02 1.91 16 17 N -0.57 -8.39 2.24 -120.87 -0.27 -8.66 16 18 C 0.70 9.89 6.93 -87.63 -0.61 9.28 16 19 O -0.53 -9.23 16.29 5.33 0.09 -9.14 16 20 N -0.72 -6.91 5.79 -53.51 -0.31 -7.22 16 21 C 0.12 1.10 1.23 -132.74 -0.16 0.93 16 22 C -0.12 -0.95 6.30 -25.92 -0.16 -1.11 16 23 C -0.12 -0.73 6.85 -24.91 -0.17 -0.90 16 24 C -0.12 -0.63 6.92 -24.59 -0.17 -0.80 16 25 C -0.12 -0.88 6.13 -25.40 -0.16 -1.03 16 26 C 0.54 7.22 6.36 -10.85 -0.07 7.15 16 27 O -0.46 -7.11 17.74 5.59 0.10 -7.01 16 28 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 29 H 0.06 1.55 6.77 -51.93 -0.35 1.20 16 30 H 0.04 0.86 4.82 -51.93 -0.25 0.61 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.05 0.89 6.26 -51.93 -0.32 0.56 16 33 H 0.07 1.24 6.72 -51.93 -0.35 0.89 16 34 H 0.08 1.52 7.85 -51.93 -0.41 1.11 16 35 H 0.38 6.74 8.81 45.56 0.40 7.14 16 36 H 0.10 1.69 8.02 -51.93 -0.42 1.27 16 37 H 0.12 2.19 7.41 -51.93 -0.38 1.80 16 38 H 0.44 2.97 8.96 -40.82 -0.37 2.61 16 39 H 0.09 0.84 7.72 -51.93 -0.40 0.44 16 40 H 0.08 0.60 7.96 -51.93 -0.41 0.19 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 46 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -33.06 365.94 -6.76 -39.82 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.68 Total: 10.59 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: -1.17 Total: 20.86 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.35 Total: -50.08 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.05 Total: -42.55 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.06 -6.76 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276672600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.995 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds