Wall clock time and date at job start Tue Mar 31 2020 22:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37102 * 119.99278 * 2 1 4 4 H 1.08005 * 119.99525 * 205.68756 * 3 2 1 5 5 C 1.38947 * 120.00324 * 25.69471 * 3 2 1 6 6 N 1.31408 * 119.99852 * 10.91648 * 5 3 2 7 7 Si 1.86800 * 119.99855 * 190.91269 * 5 3 2 8 8 H 1.48490 * 109.47341 * 59.99942 * 7 5 3 9 9 H 1.48502 * 109.46962 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47130 * 299.99854 * 7 5 3 11 11 C 1.34771 * 120.00416 * 180.02562 * 2 1 3 12 12 O 1.21287 * 120.00118 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99864 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.47245 * 84.99970 * 13 11 2 15 15 O 1.42901 * 109.46920 * 324.99866 * 13 11 2 16 16 C 1.52995 * 109.47005 * 205.00183 * 13 11 2 17 17 N 1.46501 * 109.47309 * 185.00226 * 16 13 11 18 18 C 1.33927 * 124.21111 * 90.01522 * 17 16 13 19 19 O 1.21540 * 123.80189 * 0.02562 * 18 17 16 20 20 N 1.34822 * 112.39698 * 180.02562 * 18 17 16 21 21 C 1.46427 * 106.22310 * 0.02562 * 20 18 17 22 22 C 1.53052 * 111.40191 * 120.28703 * 21 20 18 23 23 C 1.54497 * 106.27148 * 122.21414 * 22 21 20 24 24 C 1.54964 * 104.21521 * 336.51131 * 23 22 21 25 25 C 1.53448 * 111.16442 * 240.11601 * 21 20 18 26 26 C 1.35055 * 124.20786 * 270.02749 * 17 16 13 27 27 O 1.21239 * 127.34781 * 359.97438 * 26 17 16 28 28 H 1.09003 * 109.46919 * 264.78462 * 1 2 3 29 29 H 1.08994 * 109.47581 * 24.78807 * 1 2 3 30 30 H 1.09003 * 109.47064 * 144.79050 * 1 2 3 31 31 H 0.97006 * 119.99808 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47354 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47094 * 300.00437 * 14 13 11 34 34 H 1.09004 * 109.46554 * 59.99592 * 14 13 11 35 35 H 0.96694 * 114.00372 * 300.00107 * 15 13 11 36 36 H 1.09002 * 109.47760 * 64.99729 * 16 13 11 37 37 H 1.09002 * 109.47232 * 304.99654 * 16 13 11 38 38 H 0.96998 * 126.88877 * 180.02562 * 20 18 17 39 39 H 1.09003 * 110.09756 * 241.42221 * 22 21 20 40 40 H 1.09002 * 110.09496 * 3.01472 * 22 21 20 41 41 H 1.09007 * 110.47747 * 95.18872 * 23 22 21 42 42 H 1.08994 * 110.48304 * 217.82061 * 23 22 21 43 43 H 1.09005 * 110.73164 * 279.14586 * 24 23 22 44 44 H 1.08998 * 110.73860 * 155.82755 * 24 23 22 45 45 H 1.08994 * 110.52729 * 19.57264 * 25 21 20 46 46 H 1.09007 * 110.52380 * 142.32835 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1504 1.2337 -0.4055 5 6 1.5586 2.3312 0.5217 6 7 0.4399 2.2389 1.2049 7 14 2.3534 4.0000 0.2520 8 1 2.4443 4.2755 -1.2043 9 1 1.5319 5.0509 0.9048 10 1 3.7163 4.0003 0.8418 11 6 2.1390 -1.1671 -0.0005 12 8 3.3518 -1.1670 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 6 1.0222 -2.8502 -1.4391 15 8 0.1913 -2.3335 0.7707 16 6 2.2625 -3.5679 0.6076 17 7 1.5781 -4.8586 0.4981 18 6 1.7016 -5.6904 -0.5443 19 8 2.3981 -5.4610 -1.5136 20 7 0.9662 -6.8108 -0.3975 21 6 0.2863 -6.6876 0.8935 22 6 -1.2348 -6.7287 0.7299 23 6 -1.7316 -7.9085 1.5949 24 6 -0.4964 -8.8361 1.7186 25 6 0.6790 -7.8316 1.8379 26 6 0.7439 -5.3577 1.4357 27 8 0.4297 -4.8450 2.4885 28 1 -0.3633 -0.0934 1.0234 29 1 -0.3634 0.9329 -0.4308 30 1 -0.3633 -0.8397 -0.5925 31 1 0.0269 3.0374 1.5694 32 1 0.4776 -3.7943 -1.4400 33 1 0.3974 -2.0696 -1.8731 34 1 1.9332 -2.9559 -2.0282 35 1 0.3460 -2.0943 1.6947 36 1 2.4479 -3.3430 1.6579 37 1 3.2112 -3.6133 0.0728 38 1 0.9006 -7.5502 -1.0218 39 1 -1.6748 -5.7954 1.0812 40 1 -1.4947 -6.8955 -0.3155 41 1 -2.0436 -7.5557 2.5780 42 1 -2.5505 -8.4280 1.0974 43 1 -0.3871 -9.4541 0.8274 44 1 -0.5669 -9.4555 2.6128 45 1 1.6110 -8.2933 1.5120 46 1 0.7689 -7.4682 2.8617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276672600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:55 Heat of formation + Delta-G solvation = -136.301331 kcal Electronic energy + Delta-G solvation = -31930.419326 eV Core-core repulsion = 27627.599071 eV Total energy + Delta-G solvation = -4302.820255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.81357 -41.14777 -39.85087 -38.88771 -37.82599 -36.90367 -36.64382 -34.81938 -33.56105 -32.29836 -29.88282 -29.30393 -28.51338 -28.12194 -26.81773 -24.64280 -24.13172 -22.20430 -21.77448 -21.24538 -20.78961 -19.34114 -18.94062 -18.57805 -18.02344 -17.50348 -17.02887 -16.99463 -16.62213 -16.29443 -16.17132 -16.02368 -15.78831 -15.57326 -15.28910 -15.17980 -14.96014 -14.35854 -13.73366 -13.61156 -13.43404 -13.37445 -13.35373 -13.29175 -13.07726 -13.05553 -12.75584 -12.72249 -12.59848 -12.42815 -12.15825 -12.09522 -12.01915 -11.83183 -11.82608 -11.46076 -11.18405 -11.00382 -10.90588 -10.46063 -10.06191 -9.70031 -8.37361 -6.05950 0.54055 1.05227 1.35683 1.39406 1.50088 1.81491 1.89848 2.12591 2.24529 2.79471 2.92507 3.02811 3.10321 3.37546 3.45699 3.50908 3.66299 3.85959 4.09416 4.21197 4.24413 4.30920 4.38946 4.44061 4.50753 4.54418 4.59045 4.63410 4.72111 4.83486 4.86106 5.01603 5.01815 5.07748 5.09474 5.24586 5.24996 5.39833 5.41873 5.47066 5.80067 6.00686 6.01816 6.30679 6.34080 6.50478 7.06944 7.09080 7.38034 7.92080 8.63709 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.003149 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.597380 B = 8889.781112 C = 9401.895917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.440 5.440 3 C -0.352 4.352 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.888 5.888 7 Si 0.991 3.009 8 H -0.267 1.267 9 H -0.268 1.268 10 H -0.275 1.275 11 C 0.413 3.587 12 O -0.626 6.626 13 C 0.128 3.872 14 C -0.115 4.115 15 O -0.539 6.539 16 C 0.119 3.881 17 N -0.572 5.572 18 C 0.697 3.303 19 O -0.570 6.570 20 N -0.693 5.693 21 C 0.124 3.876 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.119 4.119 26 C 0.529 3.471 27 O -0.482 6.482 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.275 0.725 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.384 0.616 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.453 0.547 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.178 -23.434 0.653 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.157 5.157 3 C -0.480 4.480 4 H 0.090 0.910 5 C -0.201 4.201 6 N -0.526 5.526 7 Si 0.814 3.186 8 H -0.192 1.192 9 H -0.192 1.192 10 H -0.201 1.201 11 C 0.200 3.800 12 O -0.514 6.514 13 C 0.082 3.918 14 C -0.173 4.173 15 O -0.346 6.346 16 C -0.004 4.004 17 N -0.317 5.317 18 C 0.398 3.602 19 O -0.445 6.445 20 N -0.359 5.359 21 C 0.033 3.967 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.150 4.150 25 C -0.158 4.158 26 C 0.317 3.683 27 O -0.352 6.352 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.301 0.699 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.830 -22.942 0.276 24.243 hybrid contribution 0.902 1.396 0.279 1.685 sum -6.928 -21.546 0.556 22.639 Atomic orbital electron populations 1.21475 0.78803 0.99491 1.00851 1.43793 1.06971 1.04303 1.60666 1.19640 1.01348 0.86372 1.40635 0.90979 1.26143 0.96894 1.03045 0.93995 1.70058 1.19171 1.31229 1.32119 0.85044 0.78073 0.76609 0.78902 1.19191 1.19241 1.20077 1.21223 0.87978 0.86514 0.84261 1.90494 1.15509 1.87724 1.57713 1.21333 0.85244 0.90658 0.94541 1.21607 1.02285 1.01870 0.91520 1.86544 1.29476 1.92352 1.26238 1.21831 0.95738 0.79673 1.03154 1.46425 1.44810 1.19619 1.20816 1.16117 0.80731 0.81334 0.82002 1.91016 1.43931 1.77638 1.31947 1.45426 1.47693 1.20710 1.22087 1.21651 0.96661 0.93295 0.85103 1.22371 0.88552 1.01239 1.03417 1.22444 0.98731 0.94536 0.99898 1.22570 0.91847 0.96545 1.03998 1.22651 1.01403 0.93611 0.98135 1.21192 0.76777 0.87315 0.83011 1.90766 1.56350 1.66053 1.21999 0.93432 0.93597 0.91837 0.91498 0.91101 0.91481 0.91360 0.76680 0.88636 0.88242 0.69853 0.91517 0.88164 0.91289 0.88816 0.89172 0.89286 0.88907 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.38 7.26 127.77 0.93 7.31 16 2 N -0.44 -23.40 3.01 -658.89 -1.98 -25.38 16 3 C -0.35 -20.41 9.22 84.04 0.77 -19.63 16 4 H 0.07 4.44 7.46 -2.91 -0.02 4.42 16 5 C 0.00 0.12 5.07 84.93 0.43 0.55 16 6 N -0.89 -47.54 10.82 21.66 0.23 -47.30 16 7 Si 0.99 42.91 29.57 68.60 2.03 44.94 16 8 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 9 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 C 0.41 20.83 6.56 87.66 0.58 21.41 16 12 O -0.63 -36.00 15.71 -3.05 -0.05 -36.04 16 13 C 0.13 5.00 0.73 -11.54 -0.01 4.99 16 14 C -0.12 -4.19 7.43 71.98 0.53 -3.66 16 15 O -0.54 -19.64 9.15 -148.98 -1.36 -21.01 16 16 C 0.12 4.29 4.58 86.38 0.40 4.68 16 17 N -0.57 -16.76 2.24 -773.31 -1.73 -18.49 16 18 C 0.70 19.00 6.93 179.30 1.24 20.25 16 19 O -0.57 -19.51 16.29 -3.84 -0.06 -19.57 16 20 N -0.69 -11.65 5.79 -441.46 -2.56 -14.21 16 21 C 0.12 2.07 1.23 3.05 0.00 2.08 16 22 C -0.12 -1.58 6.30 31.12 0.20 -1.38 16 23 C -0.12 -1.01 6.85 31.77 0.22 -0.79 16 24 C -0.11 -0.72 6.92 31.98 0.22 -0.50 16 25 C -0.12 -1.42 6.13 31.46 0.19 -1.22 16 26 C 0.53 13.85 6.36 87.62 0.56 14.40 16 27 O -0.48 -14.92 17.74 -2.90 -0.05 -14.97 16 28 H 0.05 2.24 7.19 -2.39 -0.02 2.23 16 29 H 0.05 2.28 6.77 -2.39 -0.02 2.26 16 30 H 0.06 2.64 4.82 -2.39 -0.01 2.63 16 31 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 32 H 0.07 2.31 6.26 -2.39 -0.01 2.29 16 33 H 0.07 2.42 6.72 -2.39 -0.02 2.41 16 34 H 0.07 2.65 7.85 -2.39 -0.02 2.63 16 35 H 0.38 13.71 8.81 -74.06 -0.65 13.05 16 36 H 0.10 3.43 8.02 -2.39 -0.02 3.41 16 37 H 0.10 3.93 7.41 -2.39 -0.02 3.91 16 38 H 0.45 4.70 8.96 -92.71 -0.83 3.87 16 39 H 0.07 1.20 7.72 -2.39 -0.02 1.18 16 40 H 0.10 1.06 7.96 -2.39 -0.02 1.05 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 44 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.09 0.96 8.04 -2.39 -0.02 0.94 16 46 H 0.08 1.16 7.87 -2.38 -0.02 1.14 16 Total: -1.00 -73.63 365.94 0.29 -73.34 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.44 Total: 30.23 kcal Atomic # 6 Polarization: 42.22 SS G_CDS: 6.26 Total: 48.48 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -6.04 Total: -105.39 kcal Atomic # 8 Polarization: -90.07 SS G_CDS: -1.53 Total: -91.59 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.63 0.29 -73.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276672600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.965 kcal (2) G-P(sol) polarization free energy of solvation -73.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds