Wall clock time and date at job start Tue Mar 31 2020 22:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37104 * 120.00116 * 2 1 4 4 H 1.08003 * 119.99991 * 180.42299 * 3 2 1 5 5 C 1.38952 * 119.99751 * 0.42309 * 3 2 1 6 6 N 1.31409 * 119.99993 * 6.86555 * 5 3 2 7 7 Si 1.86796 * 119.99789 * 186.87044 * 5 3 2 8 8 H 1.48504 * 109.47489 * 89.99748 * 7 5 3 9 9 H 1.48507 * 109.47154 * 209.99854 * 7 5 3 10 10 H 1.48503 * 109.47405 * 329.99703 * 7 5 3 11 11 C 1.34774 * 120.00379 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99800 * 4.55537 * 11 2 1 13 13 C 1.50700 * 120.00671 * 184.55100 * 11 2 1 14 14 C 1.52997 * 109.47347 * 280.16116 * 13 11 2 15 15 O 1.42901 * 109.46788 * 40.15643 * 13 11 2 16 16 C 1.53001 * 109.47267 * 160.15260 * 13 11 2 17 17 N 1.46501 * 109.46846 * 180.02562 * 16 13 11 18 18 C 1.34009 * 124.22239 * 89.97942 * 17 16 13 19 19 O 1.21546 * 123.81578 * 0.02562 * 18 17 16 20 20 N 1.34980 * 112.37014 * 179.97438 * 18 17 16 21 21 C 1.45941 * 105.99519 * 359.97438 * 20 18 17 22 22 C 1.53569 * 112.01446 * 238.41735 * 21 20 18 23 23 C 1.54504 * 104.08171 * 275.02220 * 22 21 20 24 24 C 1.53968 * 106.66315 * 337.66996 * 23 22 21 25 25 C 1.53572 * 112.00878 * 121.58205 * 21 20 18 26 26 C 1.35212 * 124.22417 * 269.95318 * 17 16 13 27 27 O 1.21228 * 127.46538 * 0.04416 * 26 17 16 28 28 H 1.08994 * 109.47174 * 174.51009 * 1 2 3 29 29 H 1.08999 * 109.47156 * 294.51790 * 1 2 3 30 30 H 1.09002 * 109.46569 * 54.51181 * 1 2 3 31 31 H 0.97003 * 119.99860 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46810 * 299.99174 * 14 13 11 33 33 H 1.08990 * 109.47557 * 59.99265 * 14 13 11 34 34 H 1.09002 * 109.47378 * 180.02562 * 14 13 11 35 35 H 0.96702 * 114.00243 * 59.99483 * 15 13 11 36 36 H 1.08996 * 109.46806 * 60.00894 * 16 13 11 37 37 H 1.08999 * 109.46895 * 300.00335 * 16 13 11 38 38 H 0.96998 * 127.00266 * 180.02562 * 20 18 17 39 39 H 1.08999 * 110.50481 * 156.36579 * 22 21 20 40 40 H 1.09001 * 110.50700 * 33.67025 * 22 21 20 41 41 H 1.09004 * 110.01296 * 218.37482 * 23 22 21 42 42 H 1.08995 * 110.01971 * 96.97675 * 23 22 21 43 43 H 1.09005 * 110.01370 * 119.31055 * 24 23 22 44 44 H 1.08996 * 110.02252 * 240.70493 * 24 23 22 45 45 H 1.09003 * 110.50723 * 326.33594 * 25 21 20 46 46 H 1.08999 * 110.50796 * 203.64160 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2305 1.1873 -0.0069 5 6 1.4558 2.3907 0.0089 6 7 0.1496 2.3942 0.1533 7 14 2.3785 4.0033 -0.1846 8 1 2.4692 4.3520 -1.6252 9 1 1.6541 5.0781 0.5403 10 1 3.7457 3.8618 0.3774 11 6 2.1389 -1.1671 0.0005 12 8 1.5354 -2.2160 -0.0824 13 6 3.6424 -1.1692 0.1041 14 6 4.2484 -0.8599 -1.2663 15 8 4.0564 -0.1750 1.0433 16 6 4.1193 -2.5449 0.5741 17 7 5.5808 -2.5466 0.6753 18 6 6.2601 -2.2123 1.7810 19 8 5.7328 -1.8711 2.8216 20 7 7.5961 -2.2983 1.6088 21 6 7.7966 -2.7398 0.2323 22 6 8.5870 -4.0544 0.1588 23 6 10.0652 -3.6078 0.2104 24 6 10.0996 -2.1406 -0.2552 25 6 8.6412 -1.7428 -0.5746 26 6 6.4127 -2.8863 -0.3351 27 8 6.1081 -3.2338 -1.4558 28 1 -0.3633 -1.0229 -0.0983 29 1 -0.3633 0.4265 0.9350 30 1 -0.3632 0.5966 -0.8368 31 1 -0.3353 3.2343 0.1599 32 1 3.9326 -1.6183 -1.9827 33 1 3.9086 0.1200 -1.6011 34 1 5.3359 -0.8619 -1.1915 35 1 3.7087 -0.3080 1.9358 36 1 3.8036 -3.3032 -0.1424 37 1 3.6875 -2.7651 1.5504 38 1 8.2830 -2.1065 2.2663 39 1 8.3774 -4.5741 -0.7761 40 1 8.3503 -4.6905 1.0118 41 1 10.6651 -4.2255 -0.4579 42 1 10.4428 -3.6847 1.2299 43 1 10.4941 -1.5064 0.5387 44 1 10.7161 -2.0471 -1.1492 45 1 8.4434 -0.7221 -0.2472 46 1 8.4414 -1.8483 -1.6409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276672601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:00 Heat of formation + Delta-G solvation = -105.474690 kcal Electronic energy + Delta-G solvation = -32130.961967 eV Core-core repulsion = 27829.478456 eV Total energy + Delta-G solvation = -4301.483511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.68780 -39.34314 -38.64264 -37.96848 -36.15241 -35.46782 -34.89867 -33.51870 -31.34496 -30.77094 -29.31004 -28.67501 -27.07699 -26.33199 -24.74913 -23.53344 -22.45365 -20.91434 -20.78228 -20.28630 -19.05713 -18.11361 -17.71831 -16.97114 -16.58226 -16.25973 -16.14979 -15.31095 -15.06210 -14.81045 -14.70968 -14.56534 -14.46799 -14.06842 -14.02353 -13.76128 -13.32732 -13.02110 -12.83209 -12.13504 -12.02795 -11.90014 -11.84839 -11.70972 -11.66530 -11.59603 -11.43387 -11.35377 -11.16163 -11.02824 -10.88263 -10.85379 -10.75904 -10.48492 -10.31324 -10.07243 -9.81450 -9.50833 -9.25012 -9.06253 -8.09419 -7.92024 -6.25260 -3.80789 1.61725 2.26063 3.06851 3.11310 3.12809 3.23129 3.27897 3.74310 3.79267 4.10016 4.10793 4.14956 4.61682 4.65481 4.82137 4.88016 4.97183 5.01814 5.07715 5.14453 5.18608 5.25211 5.35421 5.47669 5.52378 5.63598 5.66670 5.73725 5.75660 5.90332 5.91901 5.96450 6.13319 6.30121 6.38100 6.70569 6.76041 6.86797 7.14427 7.25330 7.42019 7.47181 7.62010 7.75924 8.19777 8.22594 8.48148 9.09925 9.50606 9.87383 10.68478 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.003777 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.026439 B = 7411.199554 C = 8073.298780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.421 5.421 3 C -0.324 4.324 4 H 0.133 0.867 5 C 0.027 3.973 6 N -0.879 5.879 7 Si 0.927 3.073 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.268 1.268 11 C 0.414 3.586 12 O -0.618 6.618 13 C 0.125 3.875 14 C -0.130 4.130 15 O -0.531 6.531 16 C 0.110 3.890 17 N -0.566 5.566 18 C 0.707 3.293 19 O -0.534 6.534 20 N -0.716 5.716 21 C 0.112 3.888 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.119 4.119 26 C 0.535 3.465 27 O -0.460 6.460 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.265 0.735 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.378 0.622 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.437 0.563 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.341 -8.359 0.249 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.136 5.136 3 C -0.452 4.452 4 H 0.150 0.850 5 C -0.176 4.176 6 N -0.520 5.520 7 Si 0.754 3.246 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.192 1.192 11 C 0.201 3.799 12 O -0.507 6.507 13 C 0.080 3.920 14 C -0.188 4.188 15 O -0.337 6.337 16 C -0.012 4.012 17 N -0.311 5.311 18 C 0.408 3.592 19 O -0.406 6.406 20 N -0.381 5.381 21 C 0.020 3.980 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.157 4.157 26 C 0.322 3.678 27 O -0.329 6.329 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.226 0.774 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.580 -8.436 -0.361 20.409 hybrid contribution 0.240 0.977 0.744 1.252 sum 18.820 -7.459 0.384 20.247 Atomic orbital electron populations 1.21630 0.79764 0.97595 1.03520 1.43821 1.06284 1.04977 1.58510 1.20646 0.94045 0.81953 1.48520 0.85039 1.25402 0.95663 0.99955 0.96578 1.70249 1.06490 1.27009 1.48228 0.85907 0.79508 0.80922 0.78296 1.20479 1.21022 1.19196 1.20191 0.88935 0.84201 0.86617 1.90533 1.69652 1.31363 1.59175 1.21293 0.92414 0.86689 0.91575 1.21726 0.99466 1.03954 0.93629 1.86541 1.75282 1.49496 1.22377 1.22224 0.74209 0.99755 1.04971 1.46460 1.09442 1.62095 1.13092 1.15974 0.82129 0.77653 0.83442 1.90991 1.71515 1.50817 1.27304 1.45247 1.06367 1.73079 1.13410 1.21351 0.94587 0.98091 0.83929 1.22483 0.94650 0.94357 1.04118 1.22204 0.95552 0.96296 1.01927 1.22205 0.95902 0.96067 1.01835 1.22496 0.94051 0.98527 1.00659 1.20338 0.87207 0.75567 0.84718 1.90797 1.81535 1.43258 1.17306 0.94698 0.91755 0.91271 0.92421 0.91071 0.90097 0.93284 0.77391 0.87200 0.88318 0.71888 0.89022 0.90060 0.90881 0.91313 0.91261 0.90847 0.89718 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.00 8.87 59.85 0.53 3.53 16 2 N -0.42 -10.79 3.03 -122.19 -0.37 -11.16 16 3 C -0.32 -8.27 8.05 -14.93 -0.12 -8.39 16 4 H 0.13 3.28 4.20 -52.48 -0.22 3.06 16 5 C 0.03 0.69 5.42 -17.47 -0.09 0.59 16 6 N -0.88 -23.16 9.48 55.50 0.53 -22.64 16 7 Si 0.93 20.19 29.56 -169.99 -5.02 15.16 16 8 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 C 0.41 10.00 6.59 -10.99 -0.07 9.92 16 12 O -0.62 -16.11 15.37 5.55 0.09 -16.02 16 13 C 0.13 2.52 0.72 -91.77 -0.07 2.46 16 14 C -0.13 -2.49 7.64 37.16 0.28 -2.21 16 15 O -0.53 -10.81 9.02 -35.23 -0.32 -11.13 16 16 C 0.11 1.96 4.38 -4.04 -0.02 1.94 16 17 N -0.57 -8.66 2.31 -120.93 -0.28 -8.94 16 18 C 0.71 10.45 8.19 -87.42 -0.72 9.74 16 19 O -0.53 -9.52 17.16 5.33 0.09 -9.43 16 20 N -0.72 -7.40 6.03 -53.62 -0.32 -7.72 16 21 C 0.11 1.11 1.04 -132.88 -0.14 0.97 16 22 C -0.12 -0.88 6.03 -25.65 -0.15 -1.03 16 23 C -0.12 -0.66 6.82 -25.44 -0.17 -0.83 16 24 C -0.12 -0.71 6.82 -25.44 -0.17 -0.89 16 25 C -0.12 -1.00 6.02 -25.65 -0.15 -1.16 16 26 C 0.54 7.41 5.36 -10.99 -0.06 7.35 16 27 O -0.46 -7.26 16.94 5.60 0.09 -7.16 16 28 H 0.03 0.86 6.91 -51.93 -0.36 0.50 16 29 H 0.06 1.68 7.18 -51.93 -0.37 1.31 16 30 H 0.07 1.81 6.92 -51.93 -0.36 1.45 16 31 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.65 6.65 -51.93 -0.35 1.31 16 34 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 35 H 0.38 7.46 8.98 45.56 0.41 7.87 16 36 H 0.11 2.00 7.78 -51.93 -0.40 1.60 16 37 H 0.10 1.78 7.87 -51.93 -0.41 1.38 16 38 H 0.44 3.40 8.96 -40.82 -0.37 3.03 16 39 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.81 8.07 -51.93 -0.42 0.40 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -31.34 365.25 -6.82 -38.16 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.68 Total: 13.38 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: -1.13 Total: 22.00 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.45 Total: -50.45 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.05 Total: -43.75 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.34 -6.82 -38.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276672601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.318 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds