Wall clock time and date at job start Tue Mar 31 2020 22:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37104 * 120.00116 * 2 1 4 4 H 1.08003 * 119.99991 * 180.42299 * 3 2 1 5 5 C 1.38952 * 119.99751 * 0.42309 * 3 2 1 6 6 N 1.31409 * 119.99993 * 6.86555 * 5 3 2 7 7 Si 1.86796 * 119.99789 * 186.87044 * 5 3 2 8 8 H 1.48504 * 109.47489 * 89.99748 * 7 5 3 9 9 H 1.48507 * 109.47154 * 209.99854 * 7 5 3 10 10 H 1.48503 * 109.47405 * 329.99703 * 7 5 3 11 11 C 1.34774 * 120.00379 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99800 * 4.55537 * 11 2 1 13 13 C 1.50700 * 120.00671 * 184.55100 * 11 2 1 14 14 C 1.52997 * 109.47347 * 280.16116 * 13 11 2 15 15 O 1.42901 * 109.46788 * 40.15643 * 13 11 2 16 16 C 1.53001 * 109.47267 * 160.15260 * 13 11 2 17 17 N 1.46501 * 109.46846 * 180.02562 * 16 13 11 18 18 C 1.34009 * 124.22239 * 89.97942 * 17 16 13 19 19 O 1.21546 * 123.81578 * 0.02562 * 18 17 16 20 20 N 1.34980 * 112.37014 * 179.97438 * 18 17 16 21 21 C 1.45941 * 105.99519 * 359.97438 * 20 18 17 22 22 C 1.53569 * 112.01446 * 238.41735 * 21 20 18 23 23 C 1.54504 * 104.08171 * 275.02220 * 22 21 20 24 24 C 1.53968 * 106.66315 * 337.66996 * 23 22 21 25 25 C 1.53572 * 112.00878 * 121.58205 * 21 20 18 26 26 C 1.35212 * 124.22417 * 269.95318 * 17 16 13 27 27 O 1.21228 * 127.46538 * 0.04416 * 26 17 16 28 28 H 1.08994 * 109.47174 * 174.51009 * 1 2 3 29 29 H 1.08999 * 109.47156 * 294.51790 * 1 2 3 30 30 H 1.09002 * 109.46569 * 54.51181 * 1 2 3 31 31 H 0.97003 * 119.99860 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46810 * 299.99174 * 14 13 11 33 33 H 1.08990 * 109.47557 * 59.99265 * 14 13 11 34 34 H 1.09002 * 109.47378 * 180.02562 * 14 13 11 35 35 H 0.96702 * 114.00243 * 59.99483 * 15 13 11 36 36 H 1.08996 * 109.46806 * 60.00894 * 16 13 11 37 37 H 1.08999 * 109.46895 * 300.00335 * 16 13 11 38 38 H 0.96998 * 127.00266 * 180.02562 * 20 18 17 39 39 H 1.08999 * 110.50481 * 156.36579 * 22 21 20 40 40 H 1.09001 * 110.50700 * 33.67025 * 22 21 20 41 41 H 1.09004 * 110.01296 * 218.37482 * 23 22 21 42 42 H 1.08995 * 110.01971 * 96.97675 * 23 22 21 43 43 H 1.09005 * 110.01370 * 119.31055 * 24 23 22 44 44 H 1.08996 * 110.02252 * 240.70493 * 24 23 22 45 45 H 1.09003 * 110.50723 * 326.33594 * 25 21 20 46 46 H 1.08999 * 110.50796 * 203.64160 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2305 1.1873 -0.0069 5 6 1.4558 2.3907 0.0089 6 7 0.1496 2.3942 0.1533 7 14 2.3785 4.0033 -0.1846 8 1 2.4692 4.3520 -1.6252 9 1 1.6541 5.0781 0.5403 10 1 3.7457 3.8618 0.3774 11 6 2.1389 -1.1671 0.0005 12 8 1.5354 -2.2160 -0.0824 13 6 3.6424 -1.1692 0.1041 14 6 4.2484 -0.8599 -1.2663 15 8 4.0564 -0.1750 1.0433 16 6 4.1193 -2.5449 0.5741 17 7 5.5808 -2.5466 0.6753 18 6 6.2601 -2.2123 1.7810 19 8 5.7328 -1.8711 2.8216 20 7 7.5961 -2.2983 1.6088 21 6 7.7966 -2.7398 0.2323 22 6 8.5870 -4.0544 0.1588 23 6 10.0652 -3.6078 0.2104 24 6 10.0996 -2.1406 -0.2552 25 6 8.6412 -1.7428 -0.5746 26 6 6.4127 -2.8863 -0.3351 27 8 6.1081 -3.2338 -1.4558 28 1 -0.3633 -1.0229 -0.0983 29 1 -0.3633 0.4265 0.9350 30 1 -0.3632 0.5966 -0.8368 31 1 -0.3353 3.2343 0.1599 32 1 3.9326 -1.6183 -1.9827 33 1 3.9086 0.1200 -1.6011 34 1 5.3359 -0.8619 -1.1915 35 1 3.7087 -0.3080 1.9358 36 1 3.8036 -3.3032 -0.1424 37 1 3.6875 -2.7651 1.5504 38 1 8.2830 -2.1065 2.2663 39 1 8.3774 -4.5741 -0.7761 40 1 8.3503 -4.6905 1.0118 41 1 10.6651 -4.2255 -0.4579 42 1 10.4428 -3.6847 1.2299 43 1 10.4941 -1.5064 0.5387 44 1 10.7161 -2.0471 -1.1492 45 1 8.4434 -0.7221 -0.2472 46 1 8.4414 -1.8483 -1.6409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276672601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:59 Heat of formation + Delta-G solvation = -128.753810 kcal Electronic energy + Delta-G solvation = -32131.971426 eV Core-core repulsion = 27829.478456 eV Total energy + Delta-G solvation = -4302.492970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.77244 -41.10626 -39.79462 -38.98314 -37.77023 -36.93405 -36.61939 -34.62170 -33.33843 -32.31545 -29.88474 -29.52140 -28.62425 -28.12276 -26.69272 -24.59043 -23.97392 -21.90317 -21.44642 -21.41081 -20.90273 -19.72664 -19.08177 -18.48983 -17.70655 -17.53117 -16.99359 -16.69131 -16.44351 -16.35715 -16.18313 -15.95406 -15.77317 -15.53742 -15.29789 -15.15407 -14.86020 -14.52406 -13.70396 -13.58605 -13.51435 -13.47656 -13.25335 -13.13635 -12.95580 -12.86232 -12.69602 -12.65802 -12.59731 -12.43791 -12.17039 -12.11775 -12.07070 -11.88268 -11.50157 -11.28895 -11.18715 -11.03795 -10.85243 -10.41437 -9.95856 -9.95047 -8.21411 -5.83208 0.52104 1.09258 1.37529 1.45786 1.57854 1.83376 1.93307 2.14948 2.28716 2.79782 2.91532 3.11521 3.28796 3.43405 3.44294 3.61448 3.72788 4.05615 4.07763 4.24619 4.27654 4.33856 4.41655 4.47984 4.51132 4.62382 4.67604 4.69542 4.75731 4.81894 4.85260 5.03264 5.05199 5.09035 5.15053 5.25763 5.29639 5.38870 5.47529 5.62582 5.75762 5.83436 6.03398 6.32964 6.46965 6.57096 7.10730 7.12347 7.53061 7.89050 8.73411 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.003777 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.026439 B = 7411.199554 C = 8073.298780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.436 5.436 3 C -0.336 4.336 4 H 0.138 0.862 5 C -0.017 4.017 6 N -0.906 5.906 7 Si 0.992 3.008 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.262 1.262 11 C 0.408 3.592 12 O -0.640 6.640 13 C 0.134 3.866 14 C -0.121 4.121 15 O -0.531 6.531 16 C 0.120 3.880 17 N -0.571 5.571 18 C 0.702 3.298 19 O -0.569 6.569 20 N -0.691 5.691 21 C 0.117 3.883 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.119 4.119 26 C 0.528 3.472 27 O -0.482 6.482 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.267 0.733 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.380 0.620 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.452 0.548 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.745 -8.151 0.217 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.151 5.151 3 C -0.463 4.463 4 H 0.155 0.845 5 C -0.217 4.217 6 N -0.546 5.546 7 Si 0.816 3.184 8 H -0.200 1.200 9 H -0.209 1.209 10 H -0.186 1.186 11 C 0.196 3.804 12 O -0.531 6.531 13 C 0.089 3.911 14 C -0.178 4.178 15 O -0.337 6.337 16 C -0.003 4.003 17 N -0.316 5.316 18 C 0.403 3.597 19 O -0.444 6.444 20 N -0.356 5.356 21 C 0.026 3.974 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.157 4.157 26 C 0.316 3.684 27 O -0.353 6.353 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.299 0.701 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 22.050 -8.242 -0.397 23.543 hybrid contribution -0.856 0.838 0.730 1.403 sum 21.194 -7.404 0.333 22.452 Atomic orbital electron populations 1.21390 0.80387 0.96988 1.02380 1.44046 1.06268 1.05727 1.59090 1.20879 0.94378 0.82054 1.48976 0.84486 1.26240 0.96459 1.02894 0.96082 1.70350 1.07693 1.27803 1.48782 0.84920 0.78387 0.76816 0.78265 1.19967 1.20920 1.18590 1.20950 0.90746 0.83408 0.85274 1.90505 1.70724 1.32069 1.59767 1.21191 0.89611 0.88060 0.92254 1.21633 1.00343 1.03046 0.92785 1.86510 1.74975 1.49761 1.22501 1.21859 0.76252 0.97881 1.04260 1.46468 1.08458 1.62549 1.14100 1.16112 0.83319 0.77533 0.82707 1.90969 1.72452 1.52587 1.28420 1.45119 1.04867 1.71659 1.13959 1.21517 0.92360 1.00333 0.83223 1.22536 0.95700 0.92790 1.04277 1.22211 0.93816 0.96007 1.03265 1.22209 0.93840 0.96455 1.02872 1.22546 0.95566 0.97632 1.00000 1.21051 0.88520 0.74629 0.84177 1.90783 1.82200 1.44138 1.18154 0.94828 0.92898 0.92363 0.92314 0.91232 0.91356 0.91595 0.77179 0.87814 0.88963 0.70064 0.89260 0.89569 0.89560 0.89823 0.90053 0.89706 0.90320 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.90 8.87 127.77 1.13 8.04 16 2 N -0.44 -22.76 3.03 -658.90 -1.99 -24.76 16 3 C -0.34 -17.21 8.05 84.04 0.68 -16.53 16 4 H 0.14 6.78 4.20 -2.91 -0.01 6.77 16 5 C -0.02 -0.85 5.42 84.93 0.46 -0.39 16 6 N -0.91 -48.16 9.48 21.66 0.21 -47.96 16 7 Si 0.99 40.96 29.56 68.60 2.03 42.99 16 8 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 11 C 0.41 20.08 6.59 87.66 0.58 20.65 16 12 O -0.64 -34.08 15.37 -3.07 -0.05 -34.13 16 13 C 0.13 5.42 0.72 -11.54 -0.01 5.41 16 14 C -0.12 -4.58 7.64 71.98 0.55 -4.03 16 15 O -0.53 -21.57 9.02 -148.98 -1.34 -22.92 16 16 C 0.12 4.34 4.38 86.38 0.38 4.72 16 17 N -0.57 -17.16 2.31 -773.38 -1.78 -18.94 16 18 C 0.70 20.06 8.19 179.23 1.47 21.53 16 19 O -0.57 -20.06 17.16 -3.86 -0.07 -20.13 16 20 N -0.69 -12.74 6.03 -441.71 -2.66 -15.40 16 21 C 0.12 2.06 1.04 3.22 0.00 2.06 16 22 C -0.11 -1.39 6.03 31.30 0.19 -1.20 16 23 C -0.12 -0.78 6.82 31.43 0.21 -0.57 16 24 C -0.12 -0.90 6.82 31.43 0.21 -0.69 16 25 C -0.12 -1.69 6.02 31.30 0.19 -1.50 16 26 C 0.53 14.04 5.36 87.46 0.47 14.51 16 27 O -0.48 -14.90 16.94 -2.87 -0.05 -14.95 16 28 H 0.03 1.72 6.91 -2.39 -0.02 1.70 16 29 H 0.05 2.85 7.18 -2.39 -0.02 2.83 16 30 H 0.06 3.14 6.92 -2.39 -0.02 3.12 16 31 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 2.77 6.65 -2.39 -0.02 2.75 16 34 H 0.07 2.25 6.20 -2.39 -0.01 2.24 16 35 H 0.38 15.15 8.98 -74.06 -0.67 14.48 16 36 H 0.10 3.85 7.78 -2.39 -0.02 3.83 16 37 H 0.09 3.42 7.87 -2.39 -0.02 3.40 16 38 H 0.45 5.70 8.96 -92.71 -0.83 4.87 16 39 H 0.09 1.18 8.07 -2.39 -0.02 1.16 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 42 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 1.36 8.07 -2.39 -0.02 1.35 16 Total: -1.00 -67.81 365.25 0.35 -67.46 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.45 Total: 36.73 kcal Atomic # 6 Polarization: 45.49 SS G_CDS: 6.51 Total: 52.01 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -6.24 Total: -107.06 kcal Atomic # 8 Polarization: -90.62 SS G_CDS: -1.51 Total: -92.13 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -67.81 0.35 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276672601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.296 kcal (2) G-P(sol) polarization free energy of solvation -67.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds