Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46865 * 2 1 4 4 C 1.52994 * 109.47540 * 239.99842 * 2 1 3 5 5 O 1.45195 * 109.47218 * 119.99548 * 2 1 3 6 6 C 1.34643 * 116.99967 * 60.00182 * 5 2 1 7 7 O 1.21509 * 119.99620 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99891 * 180.02562 * 6 5 2 9 9 C 1.46929 * 120.68538 * 0.02562 * 8 6 5 10 10 C 1.53187 * 108.89725 * 234.00924 * 9 8 6 11 11 C 1.53128 * 109.28746 * 304.93068 * 10 9 8 12 12 C 1.52770 * 109.67913 * 60.49539 * 11 10 9 13 13 C 1.47034 * 120.67627 * 180.02562 * 8 6 5 14 14 N 1.46821 * 110.55395 * 62.64906 * 12 11 10 15 15 C 1.34689 * 106.40481 * 118.88981 * 14 12 11 16 16 O 1.21524 * 123.79027 * 179.97438 * 15 14 12 17 17 N 1.33869 * 112.41762 * 0.02562 * 15 14 12 18 18 C 1.37513 * 124.19632 * 179.97438 * 17 15 14 19 19 H 1.08009 * 120.00010 * 32.76438 * 18 17 15 20 20 C 1.38896 * 120.00372 * 212.76758 * 18 17 15 21 21 N 1.31382 * 119.99748 * 19.94266 * 20 18 17 22 22 Si 1.86803 * 120.00028 * 199.93704 * 20 18 17 23 23 H 1.48493 * 109.47289 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46695 * 120.00352 * 22 20 18 25 25 H 1.48502 * 109.47131 * 240.00004 * 22 20 18 26 26 C 1.34931 * 111.61387 * 359.97438 * 17 15 14 27 27 O 1.21229 * 127.26695 * 180.02562 * 26 17 15 28 28 H 1.08995 * 109.47744 * 300.00012 * 1 2 3 29 29 H 1.08997 * 109.47171 * 60.00817 * 1 2 3 30 30 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47288 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47239 * 299.99751 * 3 2 1 33 33 H 1.09003 * 109.47575 * 59.99406 * 3 2 1 34 34 H 1.09001 * 109.47096 * 299.99754 * 4 2 1 35 35 H 1.09002 * 109.46928 * 60.00026 * 4 2 1 36 36 H 1.09001 * 109.46990 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.56916 * 353.83402 * 9 8 6 38 38 H 1.09002 * 109.56372 * 114.18305 * 9 8 6 39 39 H 1.08998 * 109.49871 * 64.86970 * 10 9 8 40 40 H 1.08995 * 109.50009 * 184.94779 * 10 9 8 41 41 H 1.09001 * 109.44670 * 180.53157 * 11 10 9 42 42 H 1.09004 * 109.44908 * 300.46408 * 11 10 9 43 43 H 1.09002 * 109.57980 * 247.03445 * 13 8 6 44 44 H 1.08996 * 109.59095 * 7.31247 * 13 8 6 45 45 H 0.97003 * 126.79532 * 298.85594 * 14 12 11 46 46 H 0.97002 * 120.00232 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9517 -2.5096 0.5037 8 7 2.0673 -2.6653 2.4173 9 6 2.9143 -2.0302 3.4362 10 6 4.1719 -2.8815 3.6368 11 6 3.7618 -4.3166 3.9794 12 6 2.9394 -4.9040 2.8338 13 6 1.6816 -4.0725 2.5989 14 7 3.7429 -4.9770 1.6071 15 6 3.8072 -6.2798 1.2714 16 8 4.4010 -6.6983 0.2972 17 7 3.1425 -7.0618 2.1310 18 6 3.0501 -8.4293 2.0191 19 1 3.8699 -8.9934 1.5992 20 6 1.9025 -9.0851 2.4459 21 7 0.7784 -8.4193 2.5842 22 14 1.9575 -10.9138 2.8233 23 1 3.3316 -11.4262 2.5904 24 1 1.5799 -11.1379 4.2419 25 1 1.0046 -11.6307 1.9383 26 6 2.5745 -6.3420 3.1208 27 8 1.9116 -6.7605 4.0455 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2491 35 1 1.6768 -0.2074 -2.1391 36 1 3.1301 -0.7208 -1.2493 37 1 3.1986 -1.0317 3.1039 38 1 2.3660 -1.9617 4.3757 39 1 4.7619 -2.8806 2.7204 40 1 4.7652 -2.4676 4.4521 41 1 4.6549 -4.9225 4.1320 42 1 3.1640 -4.3155 4.8909 43 1 1.0191 -4.1615 3.4599 44 1 1.1694 -4.4292 1.7054 45 1 4.1469 -4.2340 1.1321 46 1 -0.0230 -8.8771 2.8827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291665587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = -110.602695 kcal Electronic energy + Delta-G solvation = -32051.285683 eV Core-core repulsion = 27749.579805 eV Total energy + Delta-G solvation = -4301.705878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64956 -40.67494 -38.31084 -37.08520 -36.48997 -34.78410 -34.25650 -33.74856 -32.28530 -31.45496 -29.72392 -27.56528 -27.47277 -25.82231 -25.75631 -23.85305 -22.31673 -21.73529 -20.63223 -19.93527 -19.14855 -17.93835 -17.35888 -16.69263 -16.38426 -16.17970 -15.73087 -15.44206 -15.15028 -14.74144 -14.57682 -14.35368 -14.32702 -13.93618 -13.77750 -13.65068 -13.44238 -13.23444 -12.76094 -12.59168 -12.57108 -12.32221 -12.25682 -12.02237 -11.99607 -11.64309 -11.54362 -11.37394 -11.12915 -11.08903 -11.01727 -10.94525 -10.74295 -10.43256 -10.36815 -9.96394 -9.65632 -9.31674 -9.13679 -8.73292 -8.45682 -7.95301 -6.43075 -4.18593 2.06704 2.84008 2.97291 3.21195 3.26720 3.32652 3.53945 3.76710 4.13020 4.38012 4.41576 4.58212 4.62123 4.75317 4.77221 4.82450 4.86908 4.99596 5.13373 5.29048 5.29962 5.34804 5.39024 5.40437 5.53823 5.56071 5.62341 5.69880 5.73914 5.74533 5.78376 5.83790 5.96597 6.14853 6.20030 6.21325 6.25158 6.41260 6.45787 6.64166 7.37433 7.44557 7.62020 7.95386 8.18655 8.37899 8.71603 9.01634 9.18462 9.77623 10.66704 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.003531 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.565871 B = 7927.366552 C = 8203.322402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.652 3.348 7 O -0.560 6.560 8 N -0.592 5.592 9 C 0.110 3.890 10 C -0.132 4.132 11 C -0.110 4.110 12 C 0.108 3.892 13 C 0.140 3.860 14 N -0.733 5.733 15 C 0.678 3.322 16 O -0.569 6.569 17 N -0.404 5.404 18 C -0.351 4.351 19 H 0.104 0.896 20 C 0.057 3.943 21 N -0.825 5.825 22 Si 0.930 3.070 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.280 1.280 26 C 0.501 3.499 27 O -0.458 6.458 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.420 0.580 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 19.772 1.620 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.449 6.449 8 N -0.333 5.333 9 C -0.013 4.013 10 C -0.170 4.170 11 C -0.149 4.149 12 C 0.015 3.985 13 C 0.018 3.982 14 N -0.397 5.397 15 C 0.382 3.618 16 O -0.446 6.446 17 N -0.136 5.136 18 C -0.477 4.477 19 H 0.122 0.878 20 C -0.154 4.154 21 N -0.458 5.458 22 Si 0.755 3.245 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.206 1.206 26 C 0.286 3.714 27 O -0.328 6.328 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.262 0.738 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.797 19.068 1.349 19.200 hybrid contribution 0.013 -0.356 -0.166 0.393 sum 1.810 18.712 1.183 18.836 Atomic orbital electron populations 1.22515 0.94077 1.05244 1.02237 1.22038 0.94343 0.91392 0.82336 1.21843 1.02168 0.92645 1.02942 1.22523 1.01558 1.03773 0.96313 1.86264 1.71642 1.23756 1.46257 1.17935 0.79069 0.80479 0.81838 1.90933 1.41030 1.70141 1.42751 1.46978 1.53103 1.11850 1.21358 1.21778 0.91095 0.96794 0.91634 1.21913 0.97232 0.95172 1.02687 1.21630 1.00533 0.95778 0.96982 1.21424 0.92548 0.97448 0.87114 1.21688 0.94827 0.76682 1.05047 1.45473 1.57795 1.07689 1.28756 1.16486 0.81314 0.81272 0.82734 1.90815 1.48396 1.76832 1.28550 1.41862 1.43641 1.08162 1.19964 1.19410 1.03173 0.77574 1.47518 0.87836 1.25331 0.93684 1.00687 0.95706 1.69918 0.99430 1.37876 1.38551 0.85845 0.78752 0.81597 0.78262 1.18976 1.20248 1.20576 1.19691 0.82786 0.85538 0.83359 1.90610 1.35724 1.76207 1.30244 0.92289 0.91293 0.89227 0.91529 0.90280 0.91597 0.89147 0.91293 0.92174 0.88978 0.90824 0.91323 0.89867 0.90465 0.89557 0.88991 0.87455 0.73830 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 2 C 0.14 1.47 1.13 -90.63 -0.10 1.37 16 3 C -0.14 -1.05 8.85 37.16 0.33 -0.72 16 4 C -0.18 -2.10 8.37 37.15 0.31 -1.78 16 5 O -0.36 -4.60 8.53 -40.33 -0.34 -4.94 16 6 C 0.65 9.86 7.74 54.06 0.42 10.28 16 7 O -0.56 -10.13 11.30 -19.28 -0.22 -10.34 16 8 N -0.59 -8.25 2.97 -178.83 -0.53 -8.78 16 9 C 0.11 1.12 6.43 -3.71 -0.02 1.10 16 10 C -0.13 -1.33 5.98 -26.57 -0.16 -1.49 16 11 C -0.11 -1.51 4.98 -26.78 -0.13 -1.65 16 12 C 0.11 1.94 0.89 -132.92 -0.12 1.82 16 13 C 0.14 2.38 5.42 -3.95 -0.02 2.36 16 14 N -0.73 -13.92 5.53 -53.70 -0.30 -14.22 16 15 C 0.68 16.66 8.58 -87.81 -0.75 15.91 16 16 O -0.57 -15.58 17.63 5.34 0.09 -15.49 16 17 N -0.40 -10.65 2.70 -65.64 -0.18 -10.82 16 18 C -0.35 -9.94 9.47 -14.76 -0.14 -10.08 16 19 H 0.10 2.93 7.91 -52.48 -0.41 2.51 16 20 C 0.06 1.58 4.82 -17.50 -0.08 1.49 16 21 N -0.83 -23.52 11.19 55.49 0.62 -22.89 16 22 Si 0.93 21.15 29.60 -169.99 -5.03 16.11 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 C 0.50 11.98 6.22 -10.72 -0.07 11.91 16 27 O -0.46 -12.03 15.42 5.60 0.09 -11.95 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.24 5.88 -51.92 -0.31 0.93 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.83 6.93 -51.93 -0.36 0.48 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.73 7.24 -51.93 -0.38 0.35 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.11 2.19 7.02 -51.93 -0.36 1.82 16 45 H 0.42 6.99 8.27 -40.82 -0.34 6.65 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -34.33 368.57 -7.15 -41.47 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.67 Total: 7.46 kcal Atomic # 6 Polarization: 29.06 SS G_CDS: -0.23 Total: 28.83 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.38 Total: -56.72 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.38 Total: -42.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.33 -7.15 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291665587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.128 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds