Wall clock time and date at job start Tue Mar 31 2020 22:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46865 * 2 1 4 4 C 1.52994 * 109.47540 * 239.99842 * 2 1 3 5 5 O 1.45195 * 109.47218 * 119.99548 * 2 1 3 6 6 C 1.34643 * 116.99967 * 60.00182 * 5 2 1 7 7 O 1.21509 * 119.99620 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99891 * 180.02562 * 6 5 2 9 9 C 1.46929 * 120.68538 * 0.02562 * 8 6 5 10 10 C 1.53187 * 108.89725 * 234.00924 * 9 8 6 11 11 C 1.53128 * 109.28746 * 304.93068 * 10 9 8 12 12 C 1.52770 * 109.67913 * 60.49539 * 11 10 9 13 13 C 1.47034 * 120.67627 * 180.02562 * 8 6 5 14 14 N 1.46821 * 110.55395 * 62.64906 * 12 11 10 15 15 C 1.34689 * 106.40481 * 118.88981 * 14 12 11 16 16 O 1.21524 * 123.79027 * 179.97438 * 15 14 12 17 17 N 1.33869 * 112.41762 * 0.02562 * 15 14 12 18 18 C 1.37513 * 124.19632 * 179.97438 * 17 15 14 19 19 H 1.08009 * 120.00010 * 32.76438 * 18 17 15 20 20 C 1.38896 * 120.00372 * 212.76758 * 18 17 15 21 21 N 1.31382 * 119.99748 * 19.94266 * 20 18 17 22 22 Si 1.86803 * 120.00028 * 199.93704 * 20 18 17 23 23 H 1.48493 * 109.47289 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46695 * 120.00352 * 22 20 18 25 25 H 1.48502 * 109.47131 * 240.00004 * 22 20 18 26 26 C 1.34931 * 111.61387 * 359.97438 * 17 15 14 27 27 O 1.21229 * 127.26695 * 180.02562 * 26 17 15 28 28 H 1.08995 * 109.47744 * 300.00012 * 1 2 3 29 29 H 1.08997 * 109.47171 * 60.00817 * 1 2 3 30 30 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47288 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47239 * 299.99751 * 3 2 1 33 33 H 1.09003 * 109.47575 * 59.99406 * 3 2 1 34 34 H 1.09001 * 109.47096 * 299.99754 * 4 2 1 35 35 H 1.09002 * 109.46928 * 60.00026 * 4 2 1 36 36 H 1.09001 * 109.46990 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.56916 * 353.83402 * 9 8 6 38 38 H 1.09002 * 109.56372 * 114.18305 * 9 8 6 39 39 H 1.08998 * 109.49871 * 64.86970 * 10 9 8 40 40 H 1.08995 * 109.50009 * 184.94779 * 10 9 8 41 41 H 1.09001 * 109.44670 * 180.53157 * 11 10 9 42 42 H 1.09004 * 109.44908 * 300.46408 * 11 10 9 43 43 H 1.09002 * 109.57980 * 247.03445 * 13 8 6 44 44 H 1.08996 * 109.59095 * 7.31247 * 13 8 6 45 45 H 0.97003 * 126.79532 * 298.85594 * 14 12 11 46 46 H 0.97002 * 120.00232 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9517 -2.5096 0.5037 8 7 2.0673 -2.6653 2.4173 9 6 2.9143 -2.0302 3.4362 10 6 4.1719 -2.8815 3.6368 11 6 3.7618 -4.3166 3.9794 12 6 2.9394 -4.9040 2.8338 13 6 1.6816 -4.0725 2.5989 14 7 3.7429 -4.9770 1.6071 15 6 3.8072 -6.2798 1.2714 16 8 4.4010 -6.6983 0.2972 17 7 3.1425 -7.0618 2.1310 18 6 3.0501 -8.4293 2.0191 19 1 3.8699 -8.9934 1.5992 20 6 1.9025 -9.0851 2.4459 21 7 0.7784 -8.4193 2.5842 22 14 1.9575 -10.9138 2.8233 23 1 3.3316 -11.4262 2.5904 24 1 1.5799 -11.1379 4.2419 25 1 1.0046 -11.6307 1.9383 26 6 2.5745 -6.3420 3.1208 27 8 1.9116 -6.7605 4.0455 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2491 35 1 1.6768 -0.2074 -2.1391 36 1 3.1301 -0.7208 -1.2493 37 1 3.1986 -1.0317 3.1039 38 1 2.3660 -1.9617 4.3757 39 1 4.7619 -2.8806 2.7204 40 1 4.7652 -2.4676 4.4521 41 1 4.6549 -4.9225 4.1320 42 1 3.1640 -4.3155 4.8909 43 1 1.0191 -4.1615 3.4599 44 1 1.1694 -4.4292 1.7054 45 1 4.1469 -4.2340 1.1321 46 1 -0.0230 -8.8771 2.8827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291665587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:23 Heat of formation + Delta-G solvation = -135.404394 kcal Electronic energy + Delta-G solvation = -32052.361165 eV Core-core repulsion = 27749.579805 eV Total energy + Delta-G solvation = -4302.781361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.36980 -41.84960 -39.61046 -38.98032 -37.71980 -36.55088 -35.95320 -34.91136 -33.68943 -33.13777 -31.17121 -28.35369 -28.25406 -27.82331 -26.90040 -25.39970 -23.51510 -23.17423 -22.39501 -21.32783 -20.28400 -19.43911 -18.82261 -18.17897 -17.84350 -17.62184 -17.26573 -17.04820 -16.45972 -16.37380 -16.10498 -15.73589 -15.48483 -15.46132 -15.24345 -14.94123 -14.61307 -14.53985 -14.29195 -13.92430 -13.69325 -13.46545 -13.29098 -13.09989 -12.99079 -12.90872 -12.89174 -12.83132 -12.49894 -12.32661 -12.24588 -12.14808 -12.08478 -11.93235 -11.64096 -11.37812 -11.34709 -11.09501 -10.77545 -10.49824 -10.07827 -9.73818 -8.52473 -6.36424 0.85697 1.12590 1.37274 1.41445 1.54652 1.71696 1.81493 2.29671 2.41161 2.63621 2.82465 3.06681 3.33407 3.52017 3.59191 3.78123 3.82230 3.97326 3.97863 4.03935 4.22455 4.43587 4.47931 4.55990 4.62491 4.69449 4.72153 4.76153 4.78595 4.82764 4.85998 4.91953 5.00089 5.05979 5.14880 5.27291 5.30462 5.30655 5.31089 5.38545 5.48101 5.82702 5.95242 6.24132 6.26583 6.65804 7.10493 7.13493 7.24025 7.76491 8.58043 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.003531 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.565871 B = 7927.366552 C = 8203.322402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.131 4.131 4 C -0.182 4.182 5 O -0.354 6.354 6 C 0.649 3.351 7 O -0.597 6.597 8 N -0.588 5.588 9 C 0.105 3.895 10 C -0.120 4.120 11 C -0.106 4.106 12 C 0.121 3.879 13 C 0.153 3.847 14 N -0.707 5.707 15 C 0.671 3.329 16 O -0.607 6.607 17 N -0.428 5.428 18 C -0.386 4.386 19 H 0.091 0.909 20 C 0.014 3.986 21 N -0.859 5.859 22 Si 1.000 3.000 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.270 1.270 26 C 0.494 3.506 27 O -0.487 6.487 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.434 0.566 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 22.627 2.951 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.188 4.188 4 C -0.240 4.240 5 O -0.268 6.268 6 C 0.405 3.595 7 O -0.488 6.488 8 N -0.328 5.328 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.145 4.145 12 C 0.029 3.971 13 C 0.029 3.971 14 N -0.372 5.372 15 C 0.374 3.626 16 O -0.487 6.487 17 N -0.160 5.160 18 C -0.511 4.511 19 H 0.109 0.891 20 C -0.194 4.194 21 N -0.492 5.492 22 Si 0.821 3.179 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.195 1.195 26 C 0.282 3.718 27 O -0.359 6.359 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.279 0.721 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.737 22.012 2.701 22.345 hybrid contribution -0.299 -1.158 -0.624 1.349 sum 2.437 20.854 2.077 21.098 Atomic orbital electron populations 1.22474 0.94318 1.03279 1.03716 1.22421 0.94410 0.92947 0.81324 1.21856 1.02577 0.89906 1.04455 1.22488 1.01767 1.01856 0.97851 1.86281 1.71296 1.22092 1.47130 1.18106 0.78678 0.81225 0.81529 1.90940 1.42585 1.71080 1.44152 1.46942 1.53481 1.10379 1.22039 1.22142 0.90643 0.97305 0.91450 1.21926 0.97473 0.92299 1.04143 1.21722 0.99644 0.97970 0.95166 1.21450 0.93659 0.93936 0.88103 1.21276 0.93830 0.78613 1.03404 1.45261 1.56929 1.06042 1.28947 1.16642 0.80988 0.82718 0.82258 1.90766 1.50059 1.77917 1.30002 1.42150 1.44430 1.08217 1.21189 1.19582 1.03506 0.79027 1.49023 0.89100 1.26323 0.92861 1.05446 0.94756 1.70002 1.00000 1.39830 1.39347 0.84824 0.79214 0.75636 0.78257 1.18141 1.19548 1.19504 1.20526 0.81177 0.87833 0.82267 1.90567 1.36489 1.77646 1.31187 0.91440 0.89200 0.92820 0.90874 0.88201 0.90665 0.92999 0.89181 0.91723 0.86831 0.88609 0.91583 0.85710 0.90828 0.88170 0.88254 0.91484 0.72101 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.70 8.37 71.98 0.60 -3.10 16 2 C 0.13 2.47 1.13 -10.80 -0.01 2.46 16 3 C -0.13 -1.51 8.85 71.98 0.64 -0.87 16 4 C -0.18 -3.98 8.37 71.98 0.60 -3.38 16 5 O -0.35 -8.21 8.53 -55.53 -0.47 -8.68 16 6 C 0.65 19.25 7.74 129.79 1.00 20.25 16 7 O -0.60 -22.40 11.30 19.81 0.22 -22.18 16 8 N -0.59 -15.53 2.97 -950.09 -2.82 -18.35 16 9 C 0.11 1.73 6.43 86.36 0.56 2.29 16 10 C -0.12 -1.93 5.98 30.70 0.18 -1.75 16 11 C -0.11 -2.67 4.98 30.56 0.15 -2.52 16 12 C 0.12 4.33 0.89 2.72 0.00 4.33 16 13 C 0.15 5.23 5.42 86.15 0.47 5.70 16 14 N -0.71 -27.15 5.53 -442.14 -2.44 -29.59 16 15 C 0.67 34.20 8.58 179.36 1.54 35.74 16 16 O -0.61 -34.68 17.63 -3.79 -0.07 -34.75 16 17 N -0.43 -23.46 2.70 -598.69 -1.62 -25.07 16 18 C -0.39 -22.77 9.47 83.96 0.79 -21.98 16 19 H 0.09 5.41 7.91 -2.91 -0.02 5.39 16 20 C 0.01 0.80 4.82 84.92 0.41 1.21 16 21 N -0.86 -50.57 11.19 21.65 0.24 -50.33 16 22 Si 1.00 44.24 29.60 68.60 2.03 46.27 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.49 24.32 6.22 87.76 0.55 24.87 16 27 O -0.49 -26.30 15.42 -2.87 -0.04 -26.35 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.52 5.88 -2.38 -0.01 1.51 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.50 6.93 -2.39 -0.02 1.48 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.14 7.24 -2.39 -0.02 1.13 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.07 2.87 7.02 -2.39 -0.02 2.86 16 45 H 0.43 14.27 8.27 -92.71 -0.77 13.51 16 46 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -81.03 368.57 2.76 -78.27 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.25 Total: 27.50 kcal Atomic # 6 Polarization: 55.77 SS G_CDS: 7.48 Total: 63.26 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -6.64 Total: -123.35 kcal Atomic # 8 Polarization: -91.59 SS G_CDS: -0.36 Total: -91.95 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -81.03 2.76 -78.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291665587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.136 kcal (2) G-P(sol) polarization free energy of solvation -81.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds