Wall clock time and date at job start Tue Mar 31 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47147 * 2 1 4 4 C 1.52999 * 109.47092 * 240.00201 * 2 1 3 5 5 O 1.45199 * 109.47261 * 120.00111 * 2 1 3 6 6 C 1.34638 * 116.99919 * 59.99973 * 5 2 1 7 7 O 1.21510 * 120.00119 * 0.02562 * 6 5 2 8 8 N 1.34771 * 120.00087 * 180.02562 * 6 5 2 9 9 C 1.46940 * 120.67916 * 0.02562 * 8 6 5 10 10 C 1.53189 * 108.86151 * 234.04994 * 9 8 6 11 11 C 1.53130 * 109.29522 * 304.88196 * 10 9 8 12 12 C 1.52471 * 109.64740 * 60.47766 * 11 10 9 13 13 C 1.47036 * 120.68417 * 179.97438 * 8 6 5 14 14 N 1.46808 * 110.57595 * 177.37195 * 12 11 10 15 15 C 1.34693 * 106.40527 * 241.32754 * 14 12 11 16 16 O 1.21518 * 123.78958 * 179.97438 * 15 14 12 17 17 N 1.33866 * 112.41974 * 0.02562 * 15 14 12 18 18 C 1.37520 * 124.19950 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99356 * 327.21983 * 18 17 15 20 20 C 1.38887 * 120.00264 * 147.21966 * 18 17 15 21 21 N 1.31384 * 120.00357 * 340.13165 * 20 18 17 22 22 Si 1.86799 * 120.00054 * 160.12611 * 20 18 17 23 23 H 1.48502 * 109.47143 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47148 * 119.99926 * 22 20 18 25 25 H 1.48496 * 109.47687 * 239.99981 * 22 20 18 26 26 C 1.34925 * 111.60753 * 0.02562 * 17 15 14 27 27 O 1.21233 * 127.26043 * 180.02562 * 26 17 15 28 28 H 1.08991 * 109.47303 * 300.00034 * 1 2 3 29 29 H 1.08995 * 109.47137 * 60.00207 * 1 2 3 30 30 H 1.09000 * 109.46706 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47150 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46978 * 300.00135 * 3 2 1 33 33 H 1.08999 * 109.46790 * 59.99648 * 3 2 1 34 34 H 1.09000 * 109.47407 * 299.99647 * 4 2 1 35 35 H 1.08995 * 109.47463 * 59.99791 * 4 2 1 36 36 H 1.09007 * 109.47084 * 179.97438 * 4 2 1 37 37 H 1.09003 * 109.56732 * 114.24007 * 9 8 6 38 38 H 1.08995 * 109.67590 * 353.92304 * 9 8 6 39 39 H 1.08996 * 109.50401 * 184.93550 * 10 9 8 40 40 H 1.08997 * 109.52764 * 64.84314 * 10 9 8 41 41 H 1.09000 * 109.43862 * 300.42792 * 11 10 9 42 42 H 1.08998 * 109.41541 * 180.51901 * 11 10 9 43 43 H 1.08998 * 109.57122 * 7.46892 * 13 8 6 44 44 H 1.08991 * 109.57996 * 247.07747 * 13 8 6 45 45 H 0.96993 * 126.80400 * 61.06565 * 14 12 11 46 46 H 0.96995 * 120.00726 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0673 -2.6655 2.4170 9 6 2.9144 -2.0303 3.4359 10 6 4.1722 -2.8818 3.6351 11 6 3.7627 -4.3169 3.9781 12 6 2.9403 -4.9023 2.8354 13 6 1.6807 -4.0724 2.5992 14 7 2.5892 -6.3000 3.1157 15 6 3.1495 -7.0365 2.1370 16 8 3.0556 -8.2458 2.0632 17 7 3.8223 -6.2869 1.2553 18 6 4.4872 -6.7897 0.1616 19 1 4.9488 -7.7648 0.2116 20 6 4.5649 -6.0436 -1.0073 21 7 3.7107 -5.0688 -1.2226 22 14 5.8841 -6.4259 -2.2734 23 1 6.7136 -7.5616 -1.7965 24 1 5.2425 -6.7893 -3.5624 25 1 6.7444 -5.2314 -2.4682 26 6 3.7682 -4.9768 1.5736 27 8 4.2753 -4.0540 0.9728 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 2.3665 -1.9628 4.3758 38 1 3.1984 -1.0310 3.1061 39 1 4.7662 -2.4683 4.4501 40 1 4.7617 -2.8809 2.7183 41 1 3.1665 -4.3157 4.8906 42 1 4.6563 -4.9223 4.1293 43 1 1.1703 -4.4295 1.7047 44 1 1.0180 -4.1606 3.4600 45 1 2.0618 -6.6285 3.8605 46 1 3.7647 -4.5480 -2.0391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291665588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:27 Heat of formation + Delta-G solvation = -106.059432 kcal Electronic energy + Delta-G solvation = -32894.689859 eV Core-core repulsion = 28593.180991 eV Total energy + Delta-G solvation = -4301.508868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59314 -40.35985 -38.18234 -36.87539 -36.13215 -34.85791 -34.09743 -33.57485 -32.09212 -31.48927 -29.41606 -27.32104 -27.12247 -25.75956 -25.57912 -23.62419 -22.10274 -21.61513 -20.95917 -19.65147 -18.78202 -17.88338 -17.23908 -16.41405 -16.26443 -16.00230 -15.57681 -15.23954 -15.03967 -14.60484 -14.46666 -14.21509 -14.06968 -13.78520 -13.75558 -13.43822 -13.21932 -13.13640 -12.64174 -12.38341 -12.36789 -12.10413 -11.99948 -11.77325 -11.63859 -11.58874 -11.24171 -11.07329 -11.04045 -11.00298 -10.96190 -10.80016 -10.69019 -10.34892 -10.09009 -9.65498 -9.57678 -9.25972 -9.01711 -8.62987 -8.32017 -7.86128 -6.34629 -4.12404 2.34268 2.98192 3.22873 3.27912 3.30903 3.34199 3.55147 4.06446 4.16350 4.41530 4.50012 4.82016 4.87614 4.90804 4.93830 5.01605 5.07415 5.14104 5.24468 5.33640 5.51070 5.54066 5.58458 5.66656 5.72666 5.77055 5.78980 5.80039 5.90078 5.93434 6.03348 6.07218 6.14545 6.24762 6.42003 6.53996 6.54205 6.69006 6.74135 6.81002 7.48468 7.60501 7.69358 8.00094 8.23377 8.74696 8.78333 9.06044 9.24299 9.83038 10.72799 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.005552 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.611299 B = 5042.356195 C = 6534.926565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.137 3.863 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.364 6.364 6 C 0.664 3.336 7 O -0.555 6.555 8 N -0.585 5.585 9 C 0.118 3.882 10 C -0.144 4.144 11 C -0.106 4.106 12 C 0.101 3.899 13 C 0.145 3.855 14 N -0.738 5.738 15 C 0.677 3.323 16 O -0.570 6.570 17 N -0.407 5.407 18 C -0.356 4.356 19 H 0.102 0.898 20 C 0.059 3.941 21 N -0.814 5.814 22 Si 0.925 3.075 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.278 1.278 26 C 0.504 3.496 27 O -0.446 6.446 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.422 0.578 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 13.130 9.123 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.100 3.900 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.279 6.279 6 C 0.419 3.581 7 O -0.443 6.443 8 N -0.326 5.326 9 C -0.005 4.005 10 C -0.183 4.183 11 C -0.145 4.145 12 C 0.008 3.992 13 C 0.022 3.978 14 N -0.403 5.403 15 C 0.380 3.620 16 O -0.447 6.447 17 N -0.139 5.139 18 C -0.481 4.481 19 H 0.119 0.881 20 C -0.154 4.154 21 N -0.446 5.446 22 Si 0.751 3.249 23 H -0.190 1.190 24 H -0.207 1.207 25 H -0.204 1.204 26 C 0.290 3.710 27 O -0.316 6.316 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.094 0.906 45 H 0.264 0.736 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.698 13.033 8.150 15.810 hybrid contribution 0.211 -0.320 -0.311 0.494 sum -3.487 12.713 7.839 15.337 Atomic orbital electron populations 1.22501 0.94442 1.05035 1.01860 1.21993 0.93929 0.91267 0.82787 1.21832 1.02296 0.92831 1.02560 1.22483 1.01938 1.03908 0.95557 1.86226 1.71762 1.23902 1.45998 1.17701 0.78766 0.80322 0.81322 1.90914 1.41419 1.69918 1.42034 1.46539 1.53254 1.11008 1.21768 1.21647 0.90894 0.97151 0.90791 1.22079 0.98052 0.94039 1.04098 1.21543 1.00023 0.96748 0.96215 1.21407 0.96411 0.83762 0.97642 1.21469 0.94358 0.78206 1.03812 1.45442 1.58823 1.05817 1.30185 1.16487 0.78797 0.85717 0.80976 1.90812 1.65363 1.11368 1.77181 1.41903 1.42468 1.07046 1.22453 1.19339 1.33596 1.06115 0.89067 0.88052 1.25305 0.96695 0.95935 0.97421 1.69959 1.30676 1.18404 1.25516 0.85923 0.80707 0.78556 0.79729 1.19040 1.20659 1.20405 1.19738 0.82906 0.83939 0.84419 1.90566 1.46118 1.40684 1.54223 0.92590 0.91489 0.89315 0.91508 0.90475 0.91840 0.88666 0.91891 0.92036 0.91661 0.89069 0.90414 0.88767 0.90852 0.90751 0.87712 0.90555 0.73574 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.37 37.16 0.31 -2.08 16 2 C 0.14 1.97 1.13 -90.62 -0.10 1.87 16 3 C -0.14 -1.47 8.85 37.16 0.33 -1.14 16 4 C -0.18 -2.96 8.37 37.16 0.31 -2.65 16 5 O -0.36 -6.03 8.53 -40.32 -0.34 -6.37 16 6 C 0.66 12.51 7.74 54.05 0.42 12.93 16 7 O -0.56 -12.04 11.30 -19.28 -0.22 -12.26 16 8 N -0.59 -9.75 2.59 -178.78 -0.46 -10.21 16 9 C 0.12 1.51 6.43 -3.70 -0.02 1.49 16 10 C -0.14 -1.93 5.82 -26.57 -0.15 -2.08 16 11 C -0.11 -1.48 5.08 -26.93 -0.14 -1.62 16 12 C 0.10 1.81 1.01 -133.04 -0.13 1.68 16 13 C 0.15 2.46 5.51 -3.91 -0.02 2.44 16 14 N -0.74 -13.31 5.89 -53.81 -0.32 -13.63 16 15 C 0.68 16.42 8.58 -87.80 -0.75 15.66 16 16 O -0.57 -15.38 17.63 5.35 0.09 -15.29 16 17 N -0.41 -10.77 2.70 -65.64 -0.18 -10.95 16 18 C -0.36 -10.17 9.47 -14.76 -0.14 -10.31 16 19 H 0.10 2.90 7.91 -52.48 -0.41 2.49 16 20 C 0.06 1.64 4.82 -17.50 -0.08 1.55 16 21 N -0.81 -23.64 11.19 55.49 0.62 -23.01 16 22 Si 0.93 21.55 29.60 -169.99 -5.03 16.52 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.50 12.16 5.87 -10.72 -0.06 12.10 16 27 O -0.45 -11.74 13.10 5.60 0.07 -11.67 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.43 5.88 -51.93 -0.31 1.12 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.94 5.88 -51.93 -0.31 1.64 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.14 6.93 -51.93 -0.36 0.78 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.64 5.99 -51.93 -0.31 1.33 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 2.18 7.00 -51.93 -0.36 1.82 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.42 5.92 8.96 -40.82 -0.37 5.56 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -35.65 365.46 -7.13 -42.78 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.63 Total: 8.74 kcal Atomic # 6 Polarization: 30.09 SS G_CDS: -0.24 Total: 29.85 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.34 Total: -57.81 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.39 Total: -45.59 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.65 -7.13 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291665588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.280 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds