Wall clock time and date at job start Tue Mar 31 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47147 * 2 1 4 4 C 1.52999 * 109.47092 * 240.00201 * 2 1 3 5 5 O 1.45199 * 109.47261 * 120.00111 * 2 1 3 6 6 C 1.34638 * 116.99919 * 59.99973 * 5 2 1 7 7 O 1.21510 * 120.00119 * 0.02562 * 6 5 2 8 8 N 1.34771 * 120.00087 * 180.02562 * 6 5 2 9 9 C 1.46940 * 120.67916 * 0.02562 * 8 6 5 10 10 C 1.53189 * 108.86151 * 234.04994 * 9 8 6 11 11 C 1.53130 * 109.29522 * 304.88196 * 10 9 8 12 12 C 1.52471 * 109.64740 * 60.47766 * 11 10 9 13 13 C 1.47036 * 120.68417 * 179.97438 * 8 6 5 14 14 N 1.46808 * 110.57595 * 177.37195 * 12 11 10 15 15 C 1.34693 * 106.40527 * 241.32754 * 14 12 11 16 16 O 1.21518 * 123.78958 * 179.97438 * 15 14 12 17 17 N 1.33866 * 112.41974 * 0.02562 * 15 14 12 18 18 C 1.37520 * 124.19950 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99356 * 327.21983 * 18 17 15 20 20 C 1.38887 * 120.00264 * 147.21966 * 18 17 15 21 21 N 1.31384 * 120.00357 * 340.13165 * 20 18 17 22 22 Si 1.86799 * 120.00054 * 160.12611 * 20 18 17 23 23 H 1.48502 * 109.47143 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47148 * 119.99926 * 22 20 18 25 25 H 1.48496 * 109.47687 * 239.99981 * 22 20 18 26 26 C 1.34925 * 111.60753 * 0.02562 * 17 15 14 27 27 O 1.21233 * 127.26043 * 180.02562 * 26 17 15 28 28 H 1.08991 * 109.47303 * 300.00034 * 1 2 3 29 29 H 1.08995 * 109.47137 * 60.00207 * 1 2 3 30 30 H 1.09000 * 109.46706 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47150 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46978 * 300.00135 * 3 2 1 33 33 H 1.08999 * 109.46790 * 59.99648 * 3 2 1 34 34 H 1.09000 * 109.47407 * 299.99647 * 4 2 1 35 35 H 1.08995 * 109.47463 * 59.99791 * 4 2 1 36 36 H 1.09007 * 109.47084 * 179.97438 * 4 2 1 37 37 H 1.09003 * 109.56732 * 114.24007 * 9 8 6 38 38 H 1.08995 * 109.67590 * 353.92304 * 9 8 6 39 39 H 1.08996 * 109.50401 * 184.93550 * 10 9 8 40 40 H 1.08997 * 109.52764 * 64.84314 * 10 9 8 41 41 H 1.09000 * 109.43862 * 300.42792 * 11 10 9 42 42 H 1.08998 * 109.41541 * 180.51901 * 11 10 9 43 43 H 1.08998 * 109.57122 * 7.46892 * 13 8 6 44 44 H 1.08991 * 109.57996 * 247.07747 * 13 8 6 45 45 H 0.96993 * 126.80400 * 61.06565 * 14 12 11 46 46 H 0.96995 * 120.00726 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0673 -2.6655 2.4170 9 6 2.9144 -2.0303 3.4359 10 6 4.1722 -2.8818 3.6351 11 6 3.7627 -4.3169 3.9781 12 6 2.9403 -4.9023 2.8354 13 6 1.6807 -4.0724 2.5992 14 7 2.5892 -6.3000 3.1157 15 6 3.1495 -7.0365 2.1370 16 8 3.0556 -8.2458 2.0632 17 7 3.8223 -6.2869 1.2553 18 6 4.4872 -6.7897 0.1616 19 1 4.9488 -7.7648 0.2116 20 6 4.5649 -6.0436 -1.0073 21 7 3.7107 -5.0688 -1.2226 22 14 5.8841 -6.4259 -2.2734 23 1 6.7136 -7.5616 -1.7965 24 1 5.2425 -6.7893 -3.5624 25 1 6.7444 -5.2314 -2.4682 26 6 3.7682 -4.9768 1.5736 27 8 4.2753 -4.0540 0.9728 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 2.3665 -1.9628 4.3758 38 1 3.1984 -1.0310 3.1061 39 1 4.7662 -2.4683 4.4501 40 1 4.7617 -2.8809 2.7183 41 1 3.1665 -4.3157 4.8906 42 1 4.6563 -4.9223 4.1293 43 1 1.1703 -4.4295 1.7047 44 1 1.0180 -4.1606 3.4600 45 1 2.0618 -6.6285 3.8605 46 1 3.7647 -4.5480 -2.0391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291665588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:27 Heat of formation + Delta-G solvation = -132.913982 kcal Electronic energy + Delta-G solvation = -32895.854359 eV Core-core repulsion = 28593.180991 eV Total energy + Delta-G solvation = -4302.673368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.31036 -41.72998 -39.66481 -38.65010 -37.59111 -36.63299 -35.89836 -34.89767 -33.65955 -33.16920 -30.83803 -28.35351 -28.26101 -27.80714 -26.81860 -25.22130 -23.37992 -23.07131 -22.82302 -21.10206 -20.14870 -19.53036 -18.78223 -18.08112 -17.80729 -17.55827 -17.11845 -16.99177 -16.41808 -16.32961 -16.01551 -15.70834 -15.47245 -15.46130 -15.22930 -14.86182 -14.56104 -14.37313 -14.15932 -13.88206 -13.60880 -13.42348 -13.28414 -13.07901 -12.94453 -12.91438 -12.88994 -12.81872 -12.47175 -12.33788 -12.22511 -12.18614 -12.08888 -11.94862 -11.55490 -11.33520 -11.30278 -10.98763 -10.71549 -10.36127 -9.99884 -9.59650 -8.48198 -6.33289 1.01709 1.18023 1.32261 1.35741 1.49466 1.87552 1.92712 2.30488 2.45286 2.76714 2.91069 3.10189 3.34647 3.58821 3.69572 3.79737 3.82787 3.97583 4.05986 4.11807 4.31801 4.47833 4.54291 4.56930 4.61491 4.71151 4.75212 4.76988 4.77783 4.84016 4.86477 4.90878 5.01164 5.09796 5.13699 5.28274 5.32085 5.36988 5.43219 5.49164 5.55423 5.87259 6.01932 6.36336 6.37105 6.70772 7.17134 7.24073 7.38037 7.84344 8.58401 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.005552 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.611299 B = 5042.356195 C = 6534.926565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.126 3.874 3 C -0.129 4.129 4 C -0.176 4.176 5 O -0.362 6.362 6 C 0.653 3.347 7 O -0.595 6.595 8 N -0.586 5.586 9 C 0.114 3.886 10 C -0.139 4.139 11 C -0.101 4.101 12 C 0.113 3.887 13 C 0.149 3.851 14 N -0.705 5.705 15 C 0.669 3.331 16 O -0.607 6.607 17 N -0.435 5.435 18 C -0.386 4.386 19 H 0.088 0.912 20 C 0.015 3.985 21 N -0.848 5.848 22 Si 0.992 3.008 23 H -0.256 1.256 24 H -0.271 1.271 25 H -0.275 1.275 26 C 0.492 3.508 27 O -0.477 6.477 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.045 0.955 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.133 0.867 45 H 0.446 0.554 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 15.510 11.890 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.089 3.911 3 C -0.186 4.186 4 C -0.233 4.233 5 O -0.276 6.276 6 C 0.408 3.592 7 O -0.486 6.486 8 N -0.326 5.326 9 C -0.007 4.007 10 C -0.178 4.178 11 C -0.139 4.139 12 C 0.021 3.979 13 C 0.025 3.975 14 N -0.371 5.371 15 C 0.372 3.628 16 O -0.488 6.488 17 N -0.168 5.168 18 C -0.512 4.512 19 H 0.106 0.894 20 C -0.194 4.194 21 N -0.480 5.480 22 Si 0.814 3.186 23 H -0.179 1.179 24 H -0.197 1.197 25 H -0.201 1.201 26 C 0.280 3.720 27 O -0.348 6.348 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.064 0.936 41 H 0.147 0.853 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.150 0.850 45 H 0.293 0.707 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.975 15.446 10.994 19.371 hybrid contribution 0.286 -1.041 -1.169 1.591 sum -3.689 14.404 9.825 17.822 Atomic orbital electron populations 1.22416 0.93408 1.03342 1.03898 1.22384 0.94946 0.92717 0.81008 1.21844 1.02057 0.90006 1.04727 1.22404 1.00608 1.01852 0.98471 1.86236 1.71692 1.22837 1.46852 1.18064 0.78680 0.81004 0.81452 1.90905 1.43278 1.70842 1.43552 1.46745 1.53343 1.10648 1.21901 1.22002 0.90557 0.96598 0.91514 1.22062 0.98272 0.94096 1.03373 1.21665 0.99833 0.96406 0.95989 1.21476 0.96619 0.83752 0.96084 1.21470 0.93856 0.78335 1.03851 1.45142 1.57609 1.05264 1.29117 1.16635 0.78994 0.85432 0.81751 1.90769 1.66841 1.12881 1.78305 1.42239 1.43331 1.08551 1.22721 1.19468 1.34810 1.06276 0.90599 0.89375 1.26248 0.98452 0.95510 0.99177 1.70084 1.32289 1.19607 1.26020 0.84936 0.77915 0.78609 0.77187 1.17915 1.19657 1.20077 1.20754 0.82637 0.82658 0.85992 1.90536 1.47277 1.41197 1.55792 0.90744 0.89174 0.92807 0.91916 0.87979 0.89960 0.93444 0.89116 0.93848 0.86724 0.88969 0.86018 0.93647 0.85266 0.91406 0.92484 0.84968 0.70685 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 8.37 71.98 0.60 -3.82 16 2 C 0.13 3.55 1.13 -10.79 -0.01 3.53 16 3 C -0.13 -2.43 8.85 71.98 0.64 -1.79 16 4 C -0.18 -5.98 8.37 71.98 0.60 -5.38 16 5 O -0.36 -11.88 8.53 -55.47 -0.47 -12.36 16 6 C 0.65 25.02 7.74 129.79 1.00 26.03 16 7 O -0.60 -27.38 11.30 19.81 0.22 -27.16 16 8 N -0.59 -18.77 2.59 -949.95 -2.46 -21.23 16 9 C 0.11 2.50 6.43 86.36 0.56 3.06 16 10 C -0.14 -3.28 5.82 30.70 0.18 -3.10 16 11 C -0.10 -2.41 5.08 30.46 0.15 -2.26 16 12 C 0.11 3.92 1.01 2.65 0.00 3.92 16 13 C 0.15 4.83 5.51 86.17 0.47 5.30 16 14 N -0.70 -24.51 5.89 -442.51 -2.60 -27.11 16 15 C 0.67 33.21 8.58 179.36 1.54 34.75 16 16 O -0.61 -33.79 17.63 -3.77 -0.07 -33.86 16 17 N -0.44 -24.07 2.70 -598.71 -1.62 -25.69 16 18 C -0.39 -23.20 9.47 83.96 0.79 -22.40 16 19 H 0.09 5.35 7.91 -2.91 -0.02 5.32 16 20 C 0.01 0.85 4.82 84.92 0.41 1.26 16 21 N -0.85 -52.14 11.19 21.65 0.24 -51.89 16 22 Si 0.99 45.99 29.60 68.60 2.03 48.02 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C 0.49 24.49 5.87 87.76 0.51 25.00 16 27 O -0.48 -26.35 13.10 -2.88 -0.04 -26.39 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.78 5.88 -2.39 -0.01 1.77 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 2.09 5.88 -2.39 -0.01 2.07 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 2.04 6.93 -2.39 -0.02 2.02 16 39 H 0.12 1.84 8.14 -2.39 -0.02 1.83 16 40 H 0.04 1.55 5.99 -2.39 -0.01 1.54 16 41 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 2.44 7.00 -2.39 -0.02 2.42 16 44 H 0.13 2.85 8.14 -2.39 -0.02 2.84 16 45 H 0.45 11.19 8.96 -92.71 -0.83 10.36 16 46 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -88.70 365.46 2.89 -85.81 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.19 Total: 27.74 kcal Atomic # 6 Polarization: 56.64 SS G_CDS: 7.46 Total: 64.10 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -6.44 Total: -125.92 kcal Atomic # 8 Polarization: -99.40 SS G_CDS: -0.35 Total: -99.76 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -88.70 2.89 -85.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291665588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.103 kcal (2) G-P(sol) polarization free energy of solvation -88.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds