Wall clock time and date at job start Tue Mar 31 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42887 * 109.47536 * 2 1 4 4 C 1.53002 * 109.46726 * 239.99528 * 2 1 3 5 5 N 1.46499 * 109.47066 * 60.00853 * 4 2 1 6 6 C 1.34776 * 120.00493 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99736 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00418 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47293 * 179.97438 * 8 6 5 10 10 C 1.37629 * 120.13129 * 265.00402 * 9 8 6 11 11 C 1.38615 * 120.24869 * 179.97438 * 10 9 8 12 12 C 1.38651 * 120.50304 * 0.02562 * 11 10 9 13 13 C 1.37599 * 120.24641 * 0.02923 * 12 11 10 14 14 C 1.40704 * 120.12111 * 84.72619 * 9 8 6 15 15 C 1.41393 * 120.24924 * 359.97438 * 14 9 8 16 16 H 1.08007 * 119.99498 * 329.70106 * 15 14 9 17 17 C 1.39938 * 120.00354 * 149.70267 * 15 14 9 18 18 N 1.30819 * 120.00191 * 162.01932 * 17 15 14 19 19 Si 1.86799 * 119.99683 * 342.01152 * 17 15 14 20 20 H 1.48497 * 109.47067 * 95.40534 * 19 17 15 21 21 H 1.48508 * 109.47025 * 215.40055 * 19 17 15 22 22 H 1.48497 * 109.47320 * 335.40274 * 19 17 15 23 23 C 1.50698 * 109.47115 * 120.00368 * 2 1 3 24 24 C 1.38242 * 120.00333 * 89.71651 * 23 2 1 25 25 C 1.38238 * 119.99710 * 179.78565 * 24 23 2 26 26 C 1.38230 * 120.00211 * 0.45106 * 25 24 23 27 27 C 1.38241 * 120.00029 * 359.80531 * 26 25 24 28 28 C 1.38234 * 119.99781 * 269.99831 * 23 2 1 29 29 H 1.09007 * 109.47043 * 300.00103 * 1 2 3 30 30 H 1.09002 * 109.47305 * 59.99504 * 1 2 3 31 31 H 1.08998 * 109.47984 * 180.02562 * 1 2 3 32 32 H 0.96698 * 114.00669 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47026 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47808 * 300.00602 * 4 2 1 35 35 H 0.97004 * 120.00309 * 359.97438 * 5 4 2 36 36 H 1.08995 * 109.47315 * 299.99845 * 8 6 5 37 37 H 1.09004 * 109.46682 * 59.99871 * 8 6 5 38 38 H 1.07997 * 119.87827 * 359.97438 * 10 9 8 39 39 H 1.08004 * 119.75130 * 180.02562 * 11 10 9 40 40 H 1.07999 * 119.87817 * 179.97438 * 12 11 10 41 41 H 1.08007 * 120.12823 * 179.97438 * 13 12 11 42 42 H 0.96997 * 120.00117 * 180.02562 * 18 17 15 43 43 H 1.07991 * 119.99789 * 0.02562 * 24 23 2 44 44 H 1.07998 * 119.99505 * 180.27872 * 25 24 23 45 45 H 1.07995 * 120.00040 * 179.83439 * 26 25 24 46 46 H 1.08001 * 119.99877 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00467 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3471 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 1.5516 -0.0307 -2.4454 6 6 1.8767 -0.4915 -3.6695 7 8 2.5738 -1.4777 -3.7808 8 6 1.3740 0.2186 -4.9000 9 6 1.8763 -0.4917 -6.1305 10 6 3.0257 -0.0635 -6.7546 11 6 3.4902 -0.7154 -7.8863 12 6 2.8042 -1.8041 -8.4027 13 6 1.6523 -2.2489 -7.7957 14 6 1.1750 -1.5991 -6.6422 15 6 -0.0035 -2.0520 -6.0056 16 1 -0.1229 -1.9282 -4.9393 17 6 -1.0150 -2.6607 -6.7571 18 7 -1.9266 -3.3853 -6.1611 19 14 -1.0635 -2.4382 -8.6111 20 1 -0.3868 -3.5867 -9.2654 21 1 -2.4760 -2.3720 -9.0649 22 1 -0.3665 -1.1790 -8.9770 23 6 2.0323 -0.7105 1.2304 24 6 2.2571 -2.0741 1.1979 25 6 2.7221 -2.7250 2.3253 26 6 2.9534 -2.0139 3.4879 27 6 2.7235 -0.6512 3.5220 28 6 2.2627 0.0004 2.3933 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 2.9703 1.4235 -0.0004 33 1 3.1299 -0.7218 -1.2490 34 1 1.6765 -1.7490 -1.2493 35 1 0.9938 0.7578 -2.3565 36 1 0.2840 0.2188 -4.8997 37 1 1.7375 1.2463 -4.9003 38 1 3.5678 0.7837 -6.3613 39 1 4.3933 -0.3728 -8.3695 40 1 3.1750 -2.3043 -9.2851 41 1 1.1192 -3.0969 -8.1998 42 1 -2.6275 -3.8075 -6.6820 43 1 2.0732 -2.6301 0.2906 44 1 2.9021 -3.7895 2.2985 45 1 3.3141 -2.5229 4.3695 46 1 2.9046 -0.0956 4.4303 47 1 2.0831 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305794931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:18 Heat of formation + Delta-G solvation = -48.077316 kcal Electronic energy + Delta-G solvation = -28742.819240 eV Core-core repulsion = 24854.673929 eV Total energy + Delta-G solvation = -3888.145311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.32227 -39.10671 -37.78523 -37.16477 -34.08730 -33.54619 -32.43966 -31.74000 -31.07940 -30.27855 -29.50509 -27.62842 -26.00723 -24.71148 -23.30620 -22.54629 -21.36216 -20.53024 -20.41454 -19.35783 -17.86032 -17.31570 -16.96802 -16.23240 -15.80550 -15.56699 -15.37885 -14.88752 -14.65798 -14.60142 -14.30798 -14.04514 -13.67523 -13.66230 -13.50551 -13.06283 -12.90337 -12.66218 -12.51824 -12.42404 -12.12428 -12.05873 -11.84686 -11.82519 -11.40271 -11.34455 -11.03125 -10.93490 -10.76744 -10.69592 -10.28104 -10.21140 -9.66883 -9.51995 -9.19430 -9.13073 -9.08313 -8.98632 -8.67251 -7.55144 -7.45523 -6.89604 -4.43204 1.07850 1.18890 2.60631 2.76178 3.15430 3.23165 3.35096 3.37256 3.52677 3.56762 4.02364 4.04089 4.41478 4.50988 4.56858 4.78896 4.81070 4.87225 4.95513 5.25975 5.33935 5.38076 5.56749 5.58116 5.66107 5.69486 5.79042 5.81349 5.84533 5.93582 6.03157 6.07968 6.13796 6.23401 6.24510 6.30434 6.33265 6.33922 6.63147 6.76195 6.76849 6.80377 6.99954 7.25281 7.37939 7.47900 7.70988 7.79200 7.94571 7.99503 8.19370 8.40639 8.73340 8.87023 8.88930 10.12633 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.002700 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.442067 B =10367.843132 C =11008.066000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 O -0.550 6.550 4 C 0.099 3.901 5 N -0.737 5.737 6 C 0.516 3.484 7 O -0.523 6.523 8 C -0.074 4.074 9 C -0.165 4.165 10 C -0.070 4.070 11 C -0.242 4.242 12 C -0.081 4.081 13 C -0.234 4.234 14 C 0.109 3.891 15 C -0.443 4.443 16 H 0.089 0.911 17 C 0.085 3.915 18 N -0.811 5.811 19 Si 0.909 3.091 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.244 1.244 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.102 4.102 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.379 0.621 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.283 0.717 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 7.167 15.971 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.124 3.876 3 O -0.355 6.355 4 C -0.026 4.026 5 N -0.392 5.392 6 C 0.303 3.697 7 O -0.397 6.397 8 C -0.113 4.113 9 C -0.167 4.167 10 C -0.088 4.088 11 C -0.262 4.262 12 C -0.099 4.099 13 C -0.253 4.253 14 C 0.106 3.894 15 C -0.472 4.472 16 H 0.107 0.893 17 C -0.134 4.134 18 N -0.435 5.435 19 Si 0.736 3.264 20 H -0.198 1.198 21 H -0.220 1.220 22 H -0.167 1.167 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.120 4.120 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.227 0.773 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.302 6.402 15.927 17.696 hybrid contribution 0.265 -0.056 -0.600 0.658 sum 4.567 6.347 15.327 17.206 Atomic orbital electron populations 1.21761 0.91047 1.03233 1.03213 1.20196 0.95444 0.81734 0.90212 1.86529 1.27096 1.25155 1.96767 1.21921 0.99279 0.97038 0.84313 1.45990 1.55514 1.32663 1.05047 1.21117 0.79776 0.84699 0.84075 1.90688 1.36965 1.25536 1.86520 1.20285 1.02766 0.97814 0.90481 1.19075 0.99602 0.99218 0.98781 1.20430 0.94807 0.98166 0.95397 1.20330 1.02653 1.01891 1.01286 1.20591 0.95349 0.96068 0.97882 1.20997 0.99389 1.03153 1.01735 1.17489 0.92525 0.88956 0.90405 1.19400 0.99201 1.31564 0.97049 0.89330 1.26145 0.94668 0.91076 1.01474 1.69703 1.12436 1.21947 1.39415 0.86352 0.76372 0.81502 0.82174 1.19799 1.22033 1.16680 1.20388 1.00808 0.94425 0.95874 1.21258 0.98432 0.94018 0.98996 1.21189 0.99380 1.00137 0.93026 1.21205 0.99979 0.94496 0.98086 1.21152 1.00012 0.94734 0.98322 1.20988 0.98568 1.00367 0.92056 0.91585 0.91035 0.90585 0.77326 0.91599 0.90597 0.76545 0.88184 0.90329 0.89117 0.89039 0.89041 0.88358 0.90635 0.85294 0.85839 0.86164 0.86084 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.65 37.15 0.32 -1.11 16 2 C 0.17 1.74 0.88 -91.77 -0.08 1.66 16 3 O -0.55 -5.37 11.71 -35.23 -0.41 -5.78 16 4 C 0.10 1.32 4.09 -4.04 -0.02 1.30 16 5 N -0.74 -10.87 5.15 -60.29 -0.31 -11.18 16 6 C 0.52 10.05 7.42 -10.99 -0.08 9.97 16 7 O -0.52 -12.58 16.03 5.56 0.09 -12.49 16 8 C -0.07 -1.41 5.19 -29.04 -0.15 -1.56 16 9 C -0.17 -3.83 4.43 -103.92 -0.46 -4.29 16 10 C -0.07 -1.52 9.66 -39.66 -0.38 -1.91 16 11 C -0.24 -5.29 10.05 -39.29 -0.39 -5.69 16 12 C -0.08 -1.84 10.02 -39.66 -0.40 -2.24 16 13 C -0.23 -5.90 7.17 -38.87 -0.28 -6.18 16 14 C 0.11 2.83 5.10 -106.82 -0.54 2.28 16 15 C -0.44 -11.99 8.56 -37.75 -0.32 -12.31 16 16 H 0.09 2.51 6.99 -52.48 -0.37 2.14 16 17 C 0.08 2.23 5.41 -17.35 -0.09 2.14 16 18 N -0.81 -21.71 13.93 55.55 0.77 -20.94 16 19 Si 0.91 21.05 24.52 -169.99 -4.17 16.88 16 20 H -0.27 -6.20 6.71 56.52 0.38 -5.82 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.24 -5.74 6.85 56.52 0.39 -5.35 16 23 C -0.11 -1.18 4.80 -104.62 -0.50 -1.68 16 24 C -0.11 -1.17 9.14 -39.58 -0.36 -1.53 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.10 -0.95 9.35 -39.58 -0.37 -1.32 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.07 0.76 6.86 -51.93 -0.36 0.40 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.38 2.82 9.04 45.56 0.41 3.23 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.11 6.51 -51.93 -0.34 0.78 16 35 H 0.40 4.99 7.19 -40.82 -0.29 4.69 16 36 H 0.10 1.91 7.15 -51.93 -0.37 1.54 16 37 H 0.08 1.23 8.05 -51.93 -0.42 0.82 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 41 H 0.10 2.47 4.74 -52.48 -0.25 2.23 16 42 H 0.28 6.90 8.30 -40.82 -0.34 6.57 16 43 H 0.13 1.42 6.17 -52.49 -0.32 1.09 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.13 1.07 7.48 -52.49 -0.39 0.68 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -32.10 383.34 -9.24 -41.34 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -5.67 Total: 13.28 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -5.31 Total: -26.89 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.46 Total: -32.12 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.32 Total: -18.27 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.17 Total: 16.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.10 -9.24 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305794931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.735 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds