Wall clock time and date at job start Tue Mar 31 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42887 * 109.47536 * 2 1 4 4 C 1.53002 * 109.46726 * 239.99528 * 2 1 3 5 5 N 1.46499 * 109.47066 * 60.00853 * 4 2 1 6 6 C 1.34776 * 120.00493 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99736 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00418 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47293 * 179.97438 * 8 6 5 10 10 C 1.37629 * 120.13129 * 265.00402 * 9 8 6 11 11 C 1.38615 * 120.24869 * 179.97438 * 10 9 8 12 12 C 1.38651 * 120.50304 * 0.02562 * 11 10 9 13 13 C 1.37599 * 120.24641 * 0.02923 * 12 11 10 14 14 C 1.40704 * 120.12111 * 84.72619 * 9 8 6 15 15 C 1.41393 * 120.24924 * 359.97438 * 14 9 8 16 16 H 1.08007 * 119.99498 * 329.70106 * 15 14 9 17 17 C 1.39938 * 120.00354 * 149.70267 * 15 14 9 18 18 N 1.30819 * 120.00191 * 162.01932 * 17 15 14 19 19 Si 1.86799 * 119.99683 * 342.01152 * 17 15 14 20 20 H 1.48497 * 109.47067 * 95.40534 * 19 17 15 21 21 H 1.48508 * 109.47025 * 215.40055 * 19 17 15 22 22 H 1.48497 * 109.47320 * 335.40274 * 19 17 15 23 23 C 1.50698 * 109.47115 * 120.00368 * 2 1 3 24 24 C 1.38242 * 120.00333 * 89.71651 * 23 2 1 25 25 C 1.38238 * 119.99710 * 179.78565 * 24 23 2 26 26 C 1.38230 * 120.00211 * 0.45106 * 25 24 23 27 27 C 1.38241 * 120.00029 * 359.80531 * 26 25 24 28 28 C 1.38234 * 119.99781 * 269.99831 * 23 2 1 29 29 H 1.09007 * 109.47043 * 300.00103 * 1 2 3 30 30 H 1.09002 * 109.47305 * 59.99504 * 1 2 3 31 31 H 1.08998 * 109.47984 * 180.02562 * 1 2 3 32 32 H 0.96698 * 114.00669 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47026 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47808 * 300.00602 * 4 2 1 35 35 H 0.97004 * 120.00309 * 359.97438 * 5 4 2 36 36 H 1.08995 * 109.47315 * 299.99845 * 8 6 5 37 37 H 1.09004 * 109.46682 * 59.99871 * 8 6 5 38 38 H 1.07997 * 119.87827 * 359.97438 * 10 9 8 39 39 H 1.08004 * 119.75130 * 180.02562 * 11 10 9 40 40 H 1.07999 * 119.87817 * 179.97438 * 12 11 10 41 41 H 1.08007 * 120.12823 * 179.97438 * 13 12 11 42 42 H 0.96997 * 120.00117 * 180.02562 * 18 17 15 43 43 H 1.07991 * 119.99789 * 0.02562 * 24 23 2 44 44 H 1.07998 * 119.99505 * 180.27872 * 25 24 23 45 45 H 1.07995 * 120.00040 * 179.83439 * 26 25 24 46 46 H 1.08001 * 119.99877 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.00467 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3471 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 1.5516 -0.0307 -2.4454 6 6 1.8767 -0.4915 -3.6695 7 8 2.5738 -1.4777 -3.7808 8 6 1.3740 0.2186 -4.9000 9 6 1.8763 -0.4917 -6.1305 10 6 3.0257 -0.0635 -6.7546 11 6 3.4902 -0.7154 -7.8863 12 6 2.8042 -1.8041 -8.4027 13 6 1.6523 -2.2489 -7.7957 14 6 1.1750 -1.5991 -6.6422 15 6 -0.0035 -2.0520 -6.0056 16 1 -0.1229 -1.9282 -4.9393 17 6 -1.0150 -2.6607 -6.7571 18 7 -1.9266 -3.3853 -6.1611 19 14 -1.0635 -2.4382 -8.6111 20 1 -0.3868 -3.5867 -9.2654 21 1 -2.4760 -2.3720 -9.0649 22 1 -0.3665 -1.1790 -8.9770 23 6 2.0323 -0.7105 1.2304 24 6 2.2571 -2.0741 1.1979 25 6 2.7221 -2.7250 2.3253 26 6 2.9534 -2.0139 3.4879 27 6 2.7235 -0.6512 3.5220 28 6 2.2627 0.0004 2.3933 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 2.9703 1.4235 -0.0004 33 1 3.1299 -0.7218 -1.2490 34 1 1.6765 -1.7490 -1.2493 35 1 0.9938 0.7578 -2.3565 36 1 0.2840 0.2188 -4.8997 37 1 1.7375 1.2463 -4.9003 38 1 3.5678 0.7837 -6.3613 39 1 4.3933 -0.3728 -8.3695 40 1 3.1750 -2.3043 -9.2851 41 1 1.1192 -3.0969 -8.1998 42 1 -2.6275 -3.8075 -6.6820 43 1 2.0732 -2.6301 0.2906 44 1 2.9021 -3.7895 2.2985 45 1 3.3141 -2.5229 4.3695 46 1 2.9046 -0.0956 4.4303 47 1 2.0831 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305794931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:17 Heat of formation + Delta-G solvation = -69.015984 kcal Electronic energy + Delta-G solvation = -28743.727209 eV Core-core repulsion = 24854.673929 eV Total energy + Delta-G solvation = -3889.053280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.31172 -40.49854 -39.30829 -38.25027 -35.47703 -35.32429 -33.65782 -33.15003 -32.14960 -31.79950 -30.37776 -29.07801 -27.41106 -26.45418 -24.15149 -23.38130 -23.15402 -22.05162 -21.38671 -20.90613 -19.24270 -18.71338 -18.21881 -17.52582 -17.20798 -16.78053 -16.66738 -16.14581 -16.04646 -15.69079 -15.57263 -15.42482 -15.17906 -14.83065 -14.60279 -14.49302 -14.22079 -13.92534 -13.81230 -13.68086 -13.43156 -13.35631 -13.12400 -12.99563 -12.68469 -12.66332 -12.59065 -12.49262 -12.13447 -11.98658 -11.73426 -11.52726 -11.37319 -11.18007 -10.96551 -10.78731 -10.04894 -9.85739 -9.73826 -9.39027 -9.27821 -8.85510 -6.43496 0.34601 0.46369 0.80633 0.91403 1.27481 1.40121 1.49658 1.81585 2.14389 2.27873 2.66099 2.81072 3.18989 3.52717 3.54383 3.61673 3.90203 4.07146 4.09712 4.13639 4.26857 4.29747 4.37371 4.46468 4.53747 4.57008 4.60748 4.64129 4.70993 4.74785 4.78751 4.87162 4.94806 4.99314 5.04796 5.13186 5.17012 5.17707 5.38713 5.46261 5.55266 5.59284 5.60834 5.68945 5.87896 5.96687 6.06613 6.06687 6.30648 6.46850 6.61381 6.69361 6.82101 6.92428 7.41301 8.22338 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.002700 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.442067 B =10367.843132 C =11008.066000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.182 3.818 3 O -0.549 6.549 4 C 0.101 3.899 5 N -0.716 5.716 6 C 0.516 3.484 7 O -0.577 6.577 8 C -0.074 4.074 9 C -0.171 4.171 10 C -0.079 4.079 11 C -0.230 4.230 12 C -0.092 4.092 13 C -0.257 4.257 14 C 0.082 3.918 15 C -0.469 4.469 16 H 0.057 0.943 17 C 0.048 3.952 18 N -0.852 5.852 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.250 1.250 23 C -0.123 4.123 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.104 4.104 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.391 0.609 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.413 0.587 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.291 0.709 43 H 0.114 0.886 44 H 0.133 0.867 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 9.503 16.448 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.141 3.859 3 O -0.356 6.356 4 C -0.024 4.024 5 N -0.371 5.371 6 C 0.304 3.696 7 O -0.456 6.456 8 C -0.113 4.113 9 C -0.173 4.173 10 C -0.097 4.097 11 C -0.249 4.249 12 C -0.110 4.110 13 C -0.276 4.276 14 C 0.080 3.920 15 C -0.498 4.498 16 H 0.075 0.925 17 C -0.166 4.166 18 N -0.479 5.479 19 Si 0.787 3.213 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.174 1.174 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.122 4.122 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.151 0.849 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.975 8.779 16.434 19.566 hybrid contribution -0.053 -0.689 -0.664 0.958 sum 5.921 8.090 15.770 18.687 Atomic orbital electron populations 1.21778 0.91138 1.02886 1.03693 1.19907 0.95244 0.81853 0.88924 1.86508 1.28330 1.24163 1.96628 1.21994 0.99032 0.96461 0.84898 1.45778 1.54401 1.32549 1.04330 1.21157 0.79128 0.83967 0.85372 1.90662 1.39755 1.27779 1.87368 1.20337 1.02477 0.99519 0.89014 1.19552 0.99658 0.98401 0.99655 1.20901 0.94369 0.99182 0.95289 1.20877 1.03029 1.00472 1.00544 1.20974 0.94527 0.96656 0.98854 1.21146 1.00732 1.03475 1.02288 1.17744 0.92730 0.90257 0.91290 1.19313 1.00781 1.33942 0.95798 0.92465 1.26763 0.94212 0.90732 1.04871 1.69737 1.13657 1.23619 1.40854 0.85532 0.76878 0.80924 0.77986 1.19487 1.20485 1.17370 1.20340 1.01641 0.94236 0.96169 1.21281 0.99870 0.94537 0.99151 1.21403 0.99376 1.00902 0.93157 1.21529 0.99180 0.94814 0.98360 1.21501 0.98862 0.94870 0.98945 1.21152 0.98320 1.00912 0.91808 0.90364 0.91237 0.91440 0.75959 0.91954 0.92577 0.74913 0.88678 0.86122 0.85544 0.85390 0.86107 0.89198 0.89916 0.86829 0.84896 0.83794 0.83505 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.65 71.98 0.62 -2.26 16 2 C 0.18 3.77 0.88 -11.54 -0.01 3.76 16 3 O -0.55 -9.76 11.71 -148.98 -1.74 -11.50 16 4 C 0.10 2.75 4.09 86.38 0.35 3.10 16 5 N -0.72 -21.21 5.15 -463.06 -2.38 -23.60 16 6 C 0.52 20.35 7.42 87.66 0.65 21.00 16 7 O -0.58 -28.66 16.03 -3.04 -0.05 -28.71 16 8 C -0.07 -2.80 5.19 29.10 0.15 -2.65 16 9 C -0.17 -7.84 4.43 -19.41 -0.09 -7.92 16 10 C -0.08 -3.24 9.66 22.22 0.21 -3.03 16 11 C -0.23 -9.26 10.05 22.46 0.23 -9.04 16 12 C -0.09 -4.02 10.02 22.22 0.22 -3.79 16 13 C -0.26 -12.98 7.17 22.73 0.16 -12.82 16 14 C 0.08 4.34 5.10 -21.29 -0.11 4.23 16 15 C -0.47 -26.58 8.56 23.46 0.20 -26.38 16 16 H 0.06 3.48 6.99 -2.91 -0.02 3.46 16 17 C 0.05 2.64 5.41 85.26 0.46 3.10 16 18 N -0.85 -47.73 13.93 21.82 0.30 -47.42 16 19 Si 0.96 44.28 24.52 68.60 1.68 45.97 16 20 H -0.27 -12.08 6.71 99.48 0.67 -11.41 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.25 -11.61 6.85 99.48 0.68 -10.93 16 23 C -0.12 -2.48 4.80 -19.87 -0.10 -2.58 16 24 C -0.13 -2.88 9.14 22.27 0.20 -2.67 16 25 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 26 C -0.12 -1.86 10.05 22.27 0.22 -1.63 16 27 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 28 C -0.10 -1.74 9.35 22.27 0.21 -1.53 16 29 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.45 6.86 -2.39 -0.02 1.44 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.39 5.03 9.04 -74.06 -0.67 4.36 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.78 6.51 -2.39 -0.02 1.77 16 35 H 0.41 9.98 7.19 -92.70 -0.67 9.31 16 36 H 0.10 3.70 7.15 -2.39 -0.02 3.68 16 37 H 0.12 3.45 8.05 -2.38 -0.02 3.43 16 38 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 41 H 0.09 4.58 4.74 -2.91 -0.01 4.57 16 42 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 43 H 0.11 2.77 6.17 -2.92 -0.02 2.75 16 44 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 46 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 47 H 0.14 1.99 7.48 -2.91 -0.02 1.96 16 Total: -1.00 -72.17 383.34 1.47 -70.70 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.39 Total: 39.49 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 4.05 Total: -44.93 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -2.08 Total: -71.02 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.79 Total: -40.22 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.68 Total: 45.97 kcal Total: -72.17 1.47 -70.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305794931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.686 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds