Wall clock time and date at job start Tue Mar 31 2020 22:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46867 * 2 1 4 4 C 1.52998 * 109.46989 * 119.99852 * 2 1 3 5 5 N 1.46496 * 109.47470 * 304.99700 * 4 2 1 6 6 C 1.34777 * 120.00291 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00143 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.46902 * 180.02562 * 8 6 5 10 10 C 1.37641 * 120.12422 * 264.99849 * 9 8 6 11 11 C 1.38616 * 120.24531 * 179.97438 * 10 9 8 12 12 C 1.38658 * 120.49852 * 0.02562 * 11 10 9 13 13 C 1.37596 * 120.25287 * 0.02562 * 12 11 10 14 14 C 1.40698 * 120.12596 * 84.72809 * 9 8 6 15 15 C 1.41393 * 120.24491 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00215 * 333.90087 * 15 14 9 17 17 C 1.39946 * 119.99639 * 153.89983 * 15 14 9 18 18 N 1.30825 * 120.00296 * 343.70933 * 17 15 14 19 19 Si 1.86800 * 119.99775 * 163.70809 * 17 15 14 20 20 H 1.48505 * 109.47189 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47572 * 120.00184 * 19 17 15 22 22 H 1.48504 * 109.47358 * 240.00165 * 19 17 15 23 23 C 1.50693 * 109.46964 * 239.99906 * 2 1 3 24 24 C 1.38243 * 119.99851 * 89.99839 * 23 2 1 25 25 C 1.38230 * 119.99917 * 180.02562 * 24 23 2 26 26 C 1.38234 * 120.00108 * 359.95957 * 25 24 23 27 27 C 1.38241 * 120.00018 * 0.27688 * 26 25 24 28 28 C 1.38231 * 119.99766 * 359.53103 * 27 26 25 29 29 H 1.08995 * 109.46900 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46661 * 299.99411 * 1 2 3 31 31 H 1.08996 * 109.47186 * 59.99736 * 1 2 3 32 32 H 0.96707 * 113.99874 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47151 * 65.00661 * 4 2 1 34 34 H 1.09007 * 109.47151 * 184.99930 * 4 2 1 35 35 H 0.97000 * 120.00368 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47511 * 299.99967 * 8 6 5 37 37 H 1.09001 * 109.47251 * 60.00631 * 8 6 5 38 38 H 1.07999 * 119.87778 * 0.02562 * 10 9 8 39 39 H 1.07997 * 119.75107 * 180.02562 * 11 10 9 40 40 H 1.08004 * 119.87433 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.12671 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99856 * 179.97438 * 18 17 15 43 43 H 1.08000 * 120.00080 * 0.02562 * 24 23 2 44 44 H 1.07998 * 120.00425 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.00535 * 180.02562 * 26 25 24 46 46 H 1.08004 * 119.99755 * 179.72631 * 27 26 25 47 47 H 1.08000 * 120.00155 * 180.21574 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4560 -0.1036 2.4424 6 6 1.7641 -0.5774 3.6659 7 8 2.5253 -1.5148 3.7792 8 6 1.1628 0.0576 4.8932 9 6 1.6653 -0.6528 6.1237 10 6 0.9238 -1.6661 6.6875 11 6 1.3838 -2.3216 7.8190 12 6 2.5933 -1.9652 8.3958 13 6 3.3507 -0.9545 7.8497 14 6 2.8968 -0.2866 6.6971 15 6 3.6700 0.7486 6.1229 16 1 3.5746 0.9740 5.0710 17 6 4.5590 1.4811 6.9177 18 7 4.4560 1.4415 8.2212 19 14 5.8926 2.5156 6.1171 20 1 5.7965 2.3906 4.6404 21 1 5.7166 3.9377 6.5065 22 1 7.2253 2.0402 6.5679 23 6 2.0323 -0.7104 -1.2304 24 6 2.2627 0.0006 -2.3934 25 6 2.7229 -0.6511 -3.5222 26 6 2.9536 -2.0137 -3.4879 27 6 2.7186 -2.7255 -2.3264 28 6 2.2622 -2.0731 -1.1964 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.9704 1.4237 -0.0004 33 1 1.7517 -1.7715 1.2056 34 1 3.1264 -0.6443 1.2952 35 1 0.8469 0.6459 2.3518 36 1 1.4511 1.1078 4.9373 37 1 0.0765 -0.0194 4.8470 38 1 -0.0196 -1.9521 6.2463 39 1 0.7957 -3.1158 8.2546 40 1 2.9419 -2.4824 9.2775 41 1 4.2923 -0.6784 8.3009 42 1 5.0725 1.9489 8.7721 43 1 2.0830 1.0652 -2.4200 44 1 2.9025 -0.0959 -4.4309 45 1 3.3136 -2.5229 -4.3697 46 1 2.8947 -3.7908 -2.3009 47 1 2.0819 -2.6286 -0.2879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305795369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:22 Heat of formation + Delta-G solvation = -47.931201 kcal Electronic energy + Delta-G solvation = -28723.084868 eV Core-core repulsion = 24834.945893 eV Total energy + Delta-G solvation = -3888.138975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.35150 -39.05753 -37.65642 -37.03807 -34.11923 -33.57811 -32.41941 -31.59150 -31.11576 -29.55031 -29.39591 -27.55170 -25.97361 -24.84906 -23.33767 -22.57175 -20.89766 -20.56322 -20.40091 -19.30370 -17.87822 -17.19224 -16.90078 -16.24091 -15.64916 -15.59721 -15.25110 -14.91545 -14.69831 -14.41038 -14.38711 -14.03856 -13.66982 -13.44116 -13.42575 -13.06094 -12.84777 -12.61302 -12.56336 -12.41945 -12.09544 -11.85832 -11.68815 -11.52885 -11.42003 -11.12700 -10.96534 -10.96004 -10.93989 -10.64464 -10.35129 -10.29183 -9.44381 -9.33148 -9.17827 -9.15762 -9.12084 -9.00960 -8.67948 -7.26929 -7.24842 -6.69645 -4.30036 1.04428 1.15310 2.81168 3.00501 3.09923 3.15206 3.29954 3.37993 3.49752 3.60424 3.97075 4.01320 4.38380 4.48068 4.70277 4.74437 4.76985 4.83961 4.91073 5.21512 5.30375 5.44033 5.47030 5.59591 5.63308 5.75565 5.77315 5.80764 5.87627 5.94431 6.07909 6.19116 6.21522 6.26640 6.29782 6.32620 6.48168 6.55043 6.72719 6.79327 6.84875 7.13059 7.33883 7.39419 7.46577 7.68582 7.92926 8.00376 8.12483 8.17245 8.35958 8.69372 8.90435 8.96276 9.05970 10.24529 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.002922 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.422526 B = 9580.073115 C =10728.379448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.164 3.836 3 O -0.549 6.549 4 C 0.098 3.902 5 N -0.739 5.739 6 C 0.514 3.486 7 O -0.523 6.523 8 C -0.070 4.070 9 C -0.180 4.180 10 C -0.082 4.082 11 C -0.240 4.240 12 C -0.108 4.108 13 C -0.159 4.159 14 C 0.128 3.872 15 C -0.455 4.455 16 H 0.074 0.926 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.903 3.097 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.114 4.114 24 C -0.101 4.101 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.110 4.110 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.381 0.619 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.278 0.722 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.093 -0.816 -19.845 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.123 3.877 3 O -0.356 6.356 4 C -0.026 4.026 5 N -0.395 5.395 6 C 0.302 3.698 7 O -0.396 6.396 8 C -0.110 4.110 9 C -0.182 4.182 10 C -0.100 4.100 11 C -0.259 4.259 12 C -0.126 4.126 13 C -0.179 4.179 14 C 0.126 3.874 15 C -0.485 4.485 16 H 0.092 0.908 17 C -0.141 4.141 18 N -0.422 5.422 19 Si 0.727 3.273 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.128 4.128 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.059 -1.275 -19.526 20.211 hybrid contribution 1.078 0.608 -0.389 1.297 sum -3.981 -0.667 -19.915 20.320 Atomic orbital electron populations 1.21742 0.91291 1.02899 1.03191 1.20184 0.95315 0.81970 0.90236 1.86530 1.27370 1.24919 1.96747 1.21938 0.98765 0.97506 0.84425 1.46082 1.50726 1.37367 1.05304 1.21257 0.81113 0.83443 0.84003 1.90679 1.34596 1.28021 1.86348 1.20259 0.98990 1.01143 0.90623 1.19065 0.97157 1.02810 0.99136 1.20299 0.97711 0.95953 0.96048 1.20304 0.99533 1.05083 1.00995 1.20673 0.95462 0.97931 0.98543 1.21298 1.00514 0.96739 0.99325 1.17346 0.89095 0.90333 0.90637 1.19499 1.18721 1.14016 0.96262 0.90756 1.25879 0.97213 0.96440 0.94541 1.69833 1.32890 1.34377 1.05061 0.86354 0.80896 0.79274 0.80744 1.18552 1.20032 1.19774 1.20392 1.00801 0.94420 0.95863 1.21007 0.98462 1.00406 0.92060 1.21160 0.99882 0.94739 0.98355 1.21211 0.99913 0.94503 0.98138 1.21182 0.99480 1.00084 0.93035 1.21240 0.98710 0.94032 0.98842 0.90792 0.91140 0.91520 0.77048 0.90823 0.91391 0.76611 0.88556 0.90647 0.89785 0.89697 0.89616 0.86536 0.91070 0.85327 0.86047 0.86148 0.85877 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.60 37.16 0.32 -0.92 16 2 C 0.16 1.68 0.90 -91.77 -0.08 1.60 16 3 O -0.55 -5.70 11.91 -35.23 -0.42 -6.12 16 4 C 0.10 1.27 4.29 -4.04 -0.02 1.26 16 5 N -0.74 -10.78 5.19 -60.30 -0.31 -11.10 16 6 C 0.51 10.04 7.44 -10.99 -0.08 9.95 16 7 O -0.52 -12.54 16.03 5.55 0.09 -12.45 16 8 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 9 C -0.18 -4.38 4.43 -103.91 -0.46 -4.84 16 10 C -0.08 -1.91 9.66 -39.66 -0.38 -2.30 16 11 C -0.24 -5.66 10.05 -39.29 -0.39 -6.06 16 12 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 13 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 14 C 0.13 3.47 5.56 -106.82 -0.59 2.88 16 15 C -0.46 -12.12 8.14 -37.74 -0.31 -12.42 16 16 H 0.07 1.94 6.67 -52.49 -0.35 1.59 16 17 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 18 N -0.80 -20.76 10.96 55.55 0.61 -20.16 16 19 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.11 -1.13 4.81 -104.62 -0.50 -1.64 16 24 C -0.10 -0.93 9.35 -39.58 -0.37 -1.30 16 25 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 26 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 27 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 28 C -0.11 -1.11 9.14 -39.58 -0.36 -1.47 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.64 6.57 -51.93 -0.34 0.30 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.38 3.25 9.04 45.56 0.41 3.67 16 33 H 0.07 0.97 6.21 -51.93 -0.32 0.65 16 34 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.40 4.90 6.99 -40.82 -0.29 4.61 16 36 H 0.10 1.89 7.08 -51.93 -0.37 1.52 16 37 H 0.08 1.24 8.05 -51.93 -0.42 0.83 16 38 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 41 H 0.12 3.24 6.21 -52.49 -0.33 2.92 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.13 1.09 7.48 -52.49 -0.39 0.69 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 46 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 47 H 0.13 1.27 6.05 -52.49 -0.32 0.95 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -32.10 387.98 -10.27 -42.37 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -5.65 Total: 14.51 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -5.41 Total: -26.97 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.30 Total: -31.25 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.33 Total: -18.57 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.10 -10.27 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305795369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.559 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds