Wall clock time and date at job start Tue Mar 31 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46867 * 2 1 4 4 C 1.52998 * 109.46989 * 119.99852 * 2 1 3 5 5 N 1.46496 * 109.47470 * 304.99700 * 4 2 1 6 6 C 1.34777 * 120.00291 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00143 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.46902 * 180.02562 * 8 6 5 10 10 C 1.37641 * 120.12422 * 264.99849 * 9 8 6 11 11 C 1.38616 * 120.24531 * 179.97438 * 10 9 8 12 12 C 1.38658 * 120.49852 * 0.02562 * 11 10 9 13 13 C 1.37596 * 120.25287 * 0.02562 * 12 11 10 14 14 C 1.40698 * 120.12596 * 84.72809 * 9 8 6 15 15 C 1.41393 * 120.24491 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00215 * 333.90087 * 15 14 9 17 17 C 1.39946 * 119.99639 * 153.89983 * 15 14 9 18 18 N 1.30825 * 120.00296 * 343.70933 * 17 15 14 19 19 Si 1.86800 * 119.99775 * 163.70809 * 17 15 14 20 20 H 1.48505 * 109.47189 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47572 * 120.00184 * 19 17 15 22 22 H 1.48504 * 109.47358 * 240.00165 * 19 17 15 23 23 C 1.50693 * 109.46964 * 239.99906 * 2 1 3 24 24 C 1.38243 * 119.99851 * 89.99839 * 23 2 1 25 25 C 1.38230 * 119.99917 * 180.02562 * 24 23 2 26 26 C 1.38234 * 120.00108 * 359.95957 * 25 24 23 27 27 C 1.38241 * 120.00018 * 0.27688 * 26 25 24 28 28 C 1.38231 * 119.99766 * 359.53103 * 27 26 25 29 29 H 1.08995 * 109.46900 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46661 * 299.99411 * 1 2 3 31 31 H 1.08996 * 109.47186 * 59.99736 * 1 2 3 32 32 H 0.96707 * 113.99874 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47151 * 65.00661 * 4 2 1 34 34 H 1.09007 * 109.47151 * 184.99930 * 4 2 1 35 35 H 0.97000 * 120.00368 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47511 * 299.99967 * 8 6 5 37 37 H 1.09001 * 109.47251 * 60.00631 * 8 6 5 38 38 H 1.07999 * 119.87778 * 0.02562 * 10 9 8 39 39 H 1.07997 * 119.75107 * 180.02562 * 11 10 9 40 40 H 1.08004 * 119.87433 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.12671 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99856 * 179.97438 * 18 17 15 43 43 H 1.08000 * 120.00080 * 0.02562 * 24 23 2 44 44 H 1.07998 * 120.00425 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.00535 * 180.02562 * 26 25 24 46 46 H 1.08004 * 119.99755 * 179.72631 * 27 26 25 47 47 H 1.08000 * 120.00155 * 180.21574 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4560 -0.1036 2.4424 6 6 1.7641 -0.5774 3.6659 7 8 2.5253 -1.5148 3.7792 8 6 1.1628 0.0576 4.8932 9 6 1.6653 -0.6528 6.1237 10 6 0.9238 -1.6661 6.6875 11 6 1.3838 -2.3216 7.8190 12 6 2.5933 -1.9652 8.3958 13 6 3.3507 -0.9545 7.8497 14 6 2.8968 -0.2866 6.6971 15 6 3.6700 0.7486 6.1229 16 1 3.5746 0.9740 5.0710 17 6 4.5590 1.4811 6.9177 18 7 4.4560 1.4415 8.2212 19 14 5.8926 2.5156 6.1171 20 1 5.7965 2.3906 4.6404 21 1 5.7166 3.9377 6.5065 22 1 7.2253 2.0402 6.5679 23 6 2.0323 -0.7104 -1.2304 24 6 2.2627 0.0006 -2.3934 25 6 2.7229 -0.6511 -3.5222 26 6 2.9536 -2.0137 -3.4879 27 6 2.7186 -2.7255 -2.3264 28 6 2.2622 -2.0731 -1.1964 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.9704 1.4237 -0.0004 33 1 1.7517 -1.7715 1.2056 34 1 3.1264 -0.6443 1.2952 35 1 0.8469 0.6459 2.3518 36 1 1.4511 1.1078 4.9373 37 1 0.0765 -0.0194 4.8470 38 1 -0.0196 -1.9521 6.2463 39 1 0.7957 -3.1158 8.2546 40 1 2.9419 -2.4824 9.2775 41 1 4.2923 -0.6784 8.3009 42 1 5.0725 1.9489 8.7721 43 1 2.0830 1.0652 -2.4200 44 1 2.9025 -0.0959 -4.4309 45 1 3.3136 -2.5229 -4.3697 46 1 2.8947 -3.7908 -2.3009 47 1 2.0819 -2.6286 -0.2879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305795369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:21 Heat of formation + Delta-G solvation = -67.414618 kcal Electronic energy + Delta-G solvation = -28723.929733 eV Core-core repulsion = 24834.945893 eV Total energy + Delta-G solvation = -3888.983840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28948 -40.42918 -39.13668 -38.22034 -35.49561 -35.33392 -33.58696 -33.07800 -31.79347 -31.33922 -30.33540 -28.98592 -27.42997 -26.57742 -24.12931 -23.33910 -22.81356 -22.06348 -21.33847 -20.89026 -19.07993 -18.69062 -18.15605 -17.32660 -17.17231 -16.74533 -16.60222 -16.14738 -15.98265 -15.63390 -15.50097 -15.33742 -15.00798 -14.77567 -14.55180 -14.37330 -14.19793 -13.86045 -13.52050 -13.37326 -13.36263 -13.31947 -12.95382 -12.89967 -12.74626 -12.62810 -12.57047 -12.48418 -12.12708 -12.10960 -11.70967 -11.31603 -11.22174 -11.15485 -11.02836 -10.74274 -10.01969 -9.84899 -9.72497 -9.21821 -9.15420 -8.59068 -6.28735 0.35760 0.47309 0.99375 1.13871 1.35509 1.48767 1.52213 1.84186 2.19967 2.31897 2.78931 2.82375 3.19893 3.56380 3.60803 3.78145 3.92351 4.09294 4.13332 4.16995 4.27713 4.41136 4.43685 4.55812 4.58280 4.63284 4.67091 4.71118 4.75799 4.81210 4.83347 4.89776 5.05973 5.08229 5.14104 5.20325 5.21013 5.37631 5.48776 5.55472 5.55960 5.60293 5.61816 5.78480 6.04647 6.07419 6.17842 6.22169 6.42973 6.61551 6.67933 6.75984 7.00174 7.12131 7.44391 8.37535 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.002922 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.422526 B = 9580.073115 C =10728.379448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.177 3.823 3 O -0.555 6.555 4 C 0.099 3.901 5 N -0.717 5.717 6 C 0.517 3.483 7 O -0.575 6.575 8 C -0.070 4.070 9 C -0.187 4.187 10 C -0.092 4.092 11 C -0.243 4.243 12 C -0.118 4.118 13 C -0.194 4.194 14 C 0.095 3.905 15 C -0.481 4.481 16 H 0.070 0.930 17 C 0.035 3.965 18 N -0.827 5.827 19 Si 0.972 3.028 20 H -0.263 1.263 21 H -0.260 1.260 22 H -0.270 1.270 23 C -0.123 4.123 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.129 4.129 28 C -0.128 4.128 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.388 0.612 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.413 0.587 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.285 0.715 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.136 0.864 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -0.287 -22.076 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.135 3.865 3 O -0.362 6.362 4 C -0.025 4.025 5 N -0.372 5.372 6 C 0.305 3.695 7 O -0.453 6.453 8 C -0.109 4.109 9 C -0.189 4.189 10 C -0.110 4.110 11 C -0.262 4.262 12 C -0.136 4.136 13 C -0.214 4.214 14 C 0.093 3.907 15 C -0.511 4.511 16 H 0.088 0.912 17 C -0.179 4.179 18 N -0.453 5.453 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.195 1.195 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.140 4.140 27 C -0.147 4.147 28 C -0.146 4.146 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.238 0.762 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.251 0.749 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.161 0.839 46 H 0.154 0.846 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.127 -0.714 -21.782 22.639 hybrid contribution 1.325 0.366 0.269 1.400 sum -4.802 -0.348 -21.514 22.046 Atomic orbital electron populations 1.21779 0.90339 1.03398 1.03705 1.20037 0.95886 0.81600 0.88931 1.86514 1.28196 1.24836 1.96652 1.22037 0.97742 0.97893 0.84849 1.45836 1.49854 1.36986 1.04492 1.21137 0.80432 0.82769 0.85191 1.90661 1.37009 1.30480 1.87179 1.20278 1.01151 1.00369 0.89123 1.19554 0.96251 1.02836 1.00226 1.20748 0.98911 0.95384 0.95934 1.20726 0.99119 1.05436 1.00883 1.20950 0.95933 0.97489 0.99240 1.21308 1.00719 0.98653 1.00711 1.17749 0.90614 0.91083 0.91297 1.19628 1.20371 1.14906 0.96192 0.91177 1.26670 0.98854 0.97441 0.94936 1.69890 1.33837 1.35319 1.06281 0.85318 0.77760 0.78154 0.79456 1.18631 1.18462 1.19464 1.20355 1.01603 0.94427 0.95985 1.21143 0.98542 1.00783 0.92077 1.21476 0.99005 0.95010 0.98883 1.21532 0.99211 0.94705 0.98600 1.21427 0.99272 1.00973 0.93050 1.21312 0.99743 0.94328 0.99195 0.90350 0.90872 0.90726 0.76211 0.90988 0.93155 0.74931 0.88629 0.86854 0.86451 0.86647 0.87700 0.88557 0.90399 0.84659 0.83844 0.83906 0.84599 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.60 71.98 0.62 -1.64 16 2 C 0.18 3.42 0.90 -11.54 -0.01 3.41 16 3 O -0.55 -10.70 11.91 -148.98 -1.77 -12.47 16 4 C 0.10 2.54 4.29 86.38 0.37 2.91 16 5 N -0.72 -20.25 5.19 -463.06 -2.40 -22.65 16 6 C 0.52 20.00 7.44 87.66 0.65 20.65 16 7 O -0.57 -28.08 16.03 -3.05 -0.05 -28.13 16 8 C -0.07 -2.69 5.18 29.10 0.15 -2.54 16 9 C -0.19 -9.10 4.43 -19.40 -0.09 -9.19 16 10 C -0.09 -4.17 9.66 22.22 0.21 -3.95 16 11 C -0.24 -11.18 10.05 22.46 0.23 -10.95 16 12 C -0.12 -5.90 10.02 22.22 0.22 -5.67 16 13 C -0.19 -10.94 8.69 22.73 0.20 -10.74 16 14 C 0.09 5.28 5.56 -21.29 -0.12 5.16 16 15 C -0.48 -26.40 8.14 23.46 0.19 -26.21 16 16 H 0.07 3.76 6.67 -2.91 -0.02 3.74 16 17 C 0.04 1.83 5.16 85.26 0.44 2.27 16 18 N -0.83 -44.46 10.96 21.83 0.24 -44.22 16 19 Si 0.97 39.73 29.59 68.60 2.03 41.76 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 23 C -0.12 -2.32 4.81 -19.87 -0.10 -2.41 16 24 C -0.11 -1.79 9.35 22.27 0.21 -1.58 16 25 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 26 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 27 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 28 C -0.13 -2.49 9.14 22.27 0.20 -2.29 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.16 6.57 -2.39 -0.02 1.15 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.39 6.21 9.04 -74.05 -0.67 5.54 16 33 H 0.07 1.91 6.21 -2.39 -0.01 1.89 16 34 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.41 9.39 6.99 -92.71 -0.65 8.74 16 36 H 0.10 3.71 7.08 -2.39 -0.02 3.69 16 37 H 0.11 3.44 8.05 -2.39 -0.02 3.42 16 38 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.10 5.67 6.21 -2.91 -0.02 5.65 16 42 H 0.29 13.89 8.30 -92.70 -0.77 13.13 16 43 H 0.14 2.02 7.48 -2.91 -0.02 1.99 16 44 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 46 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.12 2.44 6.05 -2.91 -0.02 2.42 16 Total: -1.00 -71.37 387.98 1.79 -69.57 By element: Atomic # 1 Polarization: 44.32 SS G_CDS: -0.31 Total: 44.02 kcal Atomic # 6 Polarization: -51.94 SS G_CDS: 4.06 Total: -47.88 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -2.16 Total: -66.87 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.82 Total: -40.60 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -71.37 1.79 -69.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305795369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.160 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds