Wall clock time and date at job start Tue Mar 31 2020 22:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46864 * 2 1 4 4 O 1.42905 * 109.46899 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47061 * 119.99478 * 2 1 3 6 6 N 1.46503 * 109.47350 * 300.00525 * 5 2 1 7 7 C 1.34772 * 120.00108 * 179.97438 * 6 5 2 8 8 O 1.21584 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.47643 * 120.00128 * 179.97438 * 7 6 5 10 10 C 1.40016 * 119.89373 * 359.72898 * 9 7 6 11 11 C 1.36314 * 120.10841 * 179.71574 * 10 9 7 12 12 C 1.40890 * 119.88969 * 0.55375 * 11 10 9 13 13 C 1.41111 * 120.10513 * 179.69469 * 12 11 10 14 14 H 1.07998 * 120.00173 * 204.65433 * 13 12 11 15 15 C 1.40230 * 119.99772 * 24.65862 * 13 12 11 16 16 N 1.30645 * 119.99785 * 17.86167 * 15 13 12 17 17 Si 1.86794 * 120.00113 * 197.86268 * 15 13 12 18 18 H 1.48506 * 109.47102 * 89.99631 * 17 15 13 19 19 H 1.48492 * 109.47330 * 210.00002 * 17 15 13 20 20 H 1.48508 * 109.47125 * 330.00196 * 17 15 13 21 21 C 1.40889 * 119.79537 * 359.72397 * 12 11 10 22 22 C 1.36319 * 119.88672 * 359.97438 * 21 12 11 23 23 C 1.50699 * 109.47339 * 239.99232 * 2 1 3 24 24 C 1.38237 * 120.00367 * 239.72313 * 23 2 1 25 25 C 1.38235 * 119.99939 * 179.81082 * 24 23 2 26 26 C 1.38239 * 119.99830 * 0.40547 * 25 24 23 27 27 C 1.38228 * 120.00104 * 359.84869 * 26 25 24 28 28 C 1.38234 * 120.00481 * 359.96023 * 27 26 25 29 29 H 1.08992 * 109.47172 * 300.00077 * 1 2 3 30 30 H 1.09000 * 109.47129 * 60.00801 * 1 2 3 31 31 H 1.09006 * 109.46700 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47001 * 299.99184 * 3 2 1 33 33 H 1.08992 * 109.47289 * 59.99995 * 3 2 1 34 34 H 0.96693 * 113.99778 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47601 * 179.97438 * 5 2 1 36 36 H 1.09001 * 109.47389 * 60.00126 * 5 2 1 37 37 H 0.97002 * 119.99483 * 359.97438 * 6 5 2 38 38 H 1.08002 * 119.94389 * 359.97438 * 10 9 7 39 39 H 1.07996 * 120.05719 * 180.25468 * 11 10 9 40 40 H 0.97005 * 119.99884 * 180.02562 * 16 15 13 41 41 H 1.07995 * 120.05707 * 179.97438 * 21 12 11 42 42 H 1.08003 * 119.94258 * 179.97438 * 22 21 12 43 43 H 1.08001 * 119.99391 * 0.02562 * 24 23 2 44 44 H 1.07996 * 119.99864 * 180.23503 * 25 24 23 45 45 H 1.07995 * 119.99886 * 179.83748 * 26 25 24 46 46 H 1.08002 * 120.00125 * 179.97438 * 27 26 25 47 47 H 1.07993 * 120.00593 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 2.0400 -0.7211 1.2493 6 7 1.5516 -0.0305 2.4455 7 6 1.8767 -0.4912 3.6696 8 8 2.5750 -1.4802 3.7812 9 6 1.3849 0.2051 4.8750 10 6 0.5856 1.3472 4.7439 11 6 0.1244 1.9902 5.8539 12 6 0.4630 1.5105 7.1347 13 6 -0.0067 2.1763 8.2868 14 1 0.5325 2.0889 9.2185 15 6 -1.1735 2.9513 8.2220 16 7 -2.0101 2.7908 7.2314 17 14 -1.5317 4.2132 9.5519 18 1 -0.9399 5.5197 9.1669 19 1 -3.0007 4.3624 9.7099 20 1 -0.9391 3.7606 10.8362 21 6 1.2724 0.3643 7.2616 22 6 1.7237 -0.2755 6.1457 23 6 2.0324 -0.7106 -1.2303 24 6 2.8319 -1.8311 -1.1034 25 6 3.2894 -2.4851 -2.2321 26 6 2.9544 -2.0137 -3.4876 27 6 2.1593 -0.8901 -3.6145 28 6 1.6984 -0.2383 -2.4860 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.8622 2.3259 0.0002 35 1 3.1300 -0.7216 1.2492 36 1 1.6767 -1.7488 1.2494 37 1 0.9941 0.7583 2.3563 38 1 0.3306 1.7169 3.7617 39 1 -0.4955 2.8686 5.7518 40 1 -2.8171 3.3272 7.1864 41 1 1.5348 -0.0068 8.2412 42 1 2.3446 -1.1540 6.2419 43 1 3.0961 -2.1976 -0.1224 44 1 3.9109 -3.3628 -2.1329 45 1 3.3140 -2.5231 -4.3694 46 1 1.8979 -0.5215 -4.5955 47 1 1.0776 0.6397 -2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346323829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:03 Heat of formation + Delta-G solvation = -52.288920 kcal Electronic energy + Delta-G solvation = -28526.378138 eV Core-core repulsion = 24638.050198 eV Total energy + Delta-G solvation = -3888.327940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.33151 -38.91860 -37.53745 -36.92647 -35.26417 -33.87386 -32.97761 -31.13850 -30.27602 -29.59695 -29.43806 -26.99052 -26.24344 -25.37525 -23.04595 -22.39902 -21.65994 -20.92146 -19.68785 -19.34312 -17.53897 -17.44102 -17.30899 -16.77802 -15.63905 -15.44869 -15.27600 -14.93880 -14.80913 -14.46982 -14.05301 -13.98812 -13.77533 -13.41047 -13.37713 -13.09190 -13.04678 -12.71459 -12.47111 -12.35506 -12.15029 -12.07748 -11.86382 -11.57925 -11.40733 -11.32613 -11.28636 -10.96123 -10.89336 -10.65280 -10.54396 -10.08284 -10.03355 -9.56954 -9.36711 -9.00441 -8.95116 -8.78992 -8.52505 -7.73074 -7.54617 -7.04645 -4.61029 1.27032 1.32178 2.23636 2.90949 2.94657 2.97094 3.02627 3.68638 3.72931 3.74945 3.88950 4.09607 4.40516 4.56825 4.65823 4.82282 4.88206 4.91611 5.01839 5.16262 5.28788 5.34886 5.37206 5.47144 5.56156 5.63264 5.65626 5.86534 5.90130 5.94502 5.96992 6.01622 6.05175 6.21724 6.31935 6.37509 6.42351 6.53896 6.75971 6.81967 6.90248 6.95592 7.06641 7.12769 7.42765 7.53367 7.64823 7.78404 7.85191 8.06392 8.25593 8.38941 8.62379 8.74508 9.11152 9.87440 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.002273 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.033572 B =12317.952499 C =12986.552410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.089 3.911 4 O -0.561 6.561 5 C 0.137 3.863 6 N -0.739 5.739 7 C 0.572 3.428 8 O -0.575 6.575 9 C -0.282 4.282 10 C -0.063 4.063 11 C -0.178 4.178 12 C 0.128 3.872 13 C -0.443 4.443 14 H 0.085 0.915 15 C 0.074 3.926 16 N -0.773 5.773 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.238 4.238 22 C -0.022 4.022 23 C -0.051 4.051 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.121 4.121 28 C -0.115 4.115 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.378 0.622 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.393 0.607 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 0.008 -18.008 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 C 0.011 3.989 4 O -0.366 6.366 5 C 0.013 3.987 6 N -0.393 5.393 7 C 0.366 3.634 8 O -0.457 6.457 9 C -0.287 4.287 10 C -0.082 4.082 11 C -0.197 4.197 12 C 0.125 3.875 13 C -0.471 4.471 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.396 5.396 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.258 4.258 22 C -0.042 4.042 23 C -0.052 4.052 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.139 4.139 28 C -0.133 4.133 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.224 0.776 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.837 -1.274 -18.026 18.292 hybrid contribution -0.552 1.595 0.387 1.731 sum 2.285 0.320 -17.639 17.789 Atomic orbital electron populations 1.21872 0.92213 1.03352 1.02415 1.19790 0.96016 0.94349 0.93227 1.22185 0.81861 0.95064 0.99820 1.86523 1.19029 1.33440 1.97628 1.21233 0.99658 0.95262 0.82526 1.45919 1.55392 1.32592 1.05359 1.18552 0.78669 0.83170 0.82959 1.90631 1.40245 1.27678 1.87145 1.18908 1.14260 1.03683 0.91801 1.20439 0.96252 0.94639 0.96916 1.20967 1.04942 1.02162 0.91652 1.17789 0.87942 0.88689 0.93120 1.19849 1.06636 1.23320 0.97251 0.89714 1.26097 0.95237 0.96497 0.96859 1.69747 1.08066 1.32577 1.29193 0.86208 0.78222 0.80629 0.81214 1.18951 1.20036 1.18276 1.20720 1.09072 0.99389 0.96588 1.20369 0.95346 0.96925 0.91516 1.19483 0.97036 0.95235 0.93429 1.21241 0.97136 0.95397 0.99264 1.21148 0.99930 0.99898 0.92536 1.21105 0.99089 0.97068 0.97344 1.21052 0.98460 0.96179 0.98220 1.20885 1.00569 0.99954 0.91922 0.91516 0.91954 0.91294 0.93452 0.93040 0.77579 0.90782 0.91920 0.77048 0.89607 0.86219 0.90272 0.88386 0.88095 0.85414 0.86161 0.86431 0.86368 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.11 37.16 0.30 -1.13 16 2 C -0.03 -0.38 0.45 -155.66 -0.07 -0.45 16 3 C 0.09 0.93 5.56 37.16 0.21 1.14 16 4 O -0.56 -6.51 12.61 -35.23 -0.44 -6.96 16 5 C 0.14 2.04 3.08 -4.04 -0.01 2.03 16 6 N -0.74 -12.43 4.91 -61.31 -0.30 -12.73 16 7 C 0.57 12.30 7.76 -12.42 -0.10 12.21 16 8 O -0.58 -13.95 16.32 5.29 0.09 -13.87 16 9 C -0.28 -6.45 5.89 -104.73 -0.62 -7.07 16 10 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 11 C -0.18 -4.31 8.64 -39.27 -0.34 -4.65 16 12 C 0.13 3.24 5.58 -106.80 -0.60 2.64 16 13 C -0.44 -10.95 9.04 -37.74 -0.34 -11.29 16 14 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 15 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 16 N -0.77 -18.31 10.95 55.56 0.61 -17.71 16 17 Si 0.91 17.14 29.60 -169.99 -5.03 12.11 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.28 -5.06 7.11 56.52 0.40 -4.65 16 20 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 21 C -0.24 -5.77 9.73 -39.27 -0.38 -6.16 16 22 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 23 C -0.05 -0.59 4.41 -104.62 -0.46 -1.05 16 24 C -0.11 -1.35 8.98 -39.58 -0.36 -1.71 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 28 C -0.12 -1.16 8.71 -39.58 -0.34 -1.51 16 29 H 0.07 0.69 6.86 -51.93 -0.36 0.33 16 30 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.41 7.39 -51.93 -0.38 0.02 16 33 H 0.05 0.54 6.86 -51.93 -0.36 0.18 16 34 H 0.38 2.82 9.12 45.56 0.42 3.24 16 35 H 0.07 1.24 7.04 -51.93 -0.37 0.87 16 36 H 0.06 0.97 7.53 -51.93 -0.39 0.58 16 37 H 0.39 5.87 4.16 -40.82 -0.17 5.70 16 38 H 0.09 1.58 6.37 -52.49 -0.33 1.24 16 39 H 0.12 2.92 6.16 -52.49 -0.32 2.60 16 40 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 41 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.10 2.33 7.63 -52.48 -0.40 1.93 16 43 H 0.13 1.61 5.89 -52.49 -0.31 1.30 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.98 7.10 -52.49 -0.37 0.61 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -30.27 382.00 -9.86 -40.13 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -5.39 Total: 16.06 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -5.14 Total: -22.81 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.31 Total: -30.43 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.36 Total: -20.82 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.27 -9.86 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346323829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.156 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds