Wall clock time and date at job start Tue Mar 31 2020 22:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46864 * 2 1 4 4 O 1.42905 * 109.46899 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47061 * 119.99478 * 2 1 3 6 6 N 1.46503 * 109.47350 * 300.00525 * 5 2 1 7 7 C 1.34772 * 120.00108 * 179.97438 * 6 5 2 8 8 O 1.21584 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.47643 * 120.00128 * 179.97438 * 7 6 5 10 10 C 1.40016 * 119.89373 * 359.72898 * 9 7 6 11 11 C 1.36314 * 120.10841 * 179.71574 * 10 9 7 12 12 C 1.40890 * 119.88969 * 0.55375 * 11 10 9 13 13 C 1.41111 * 120.10513 * 179.69469 * 12 11 10 14 14 H 1.07998 * 120.00173 * 204.65433 * 13 12 11 15 15 C 1.40230 * 119.99772 * 24.65862 * 13 12 11 16 16 N 1.30645 * 119.99785 * 17.86167 * 15 13 12 17 17 Si 1.86794 * 120.00113 * 197.86268 * 15 13 12 18 18 H 1.48506 * 109.47102 * 89.99631 * 17 15 13 19 19 H 1.48492 * 109.47330 * 210.00002 * 17 15 13 20 20 H 1.48508 * 109.47125 * 330.00196 * 17 15 13 21 21 C 1.40889 * 119.79537 * 359.72397 * 12 11 10 22 22 C 1.36319 * 119.88672 * 359.97438 * 21 12 11 23 23 C 1.50699 * 109.47339 * 239.99232 * 2 1 3 24 24 C 1.38237 * 120.00367 * 239.72313 * 23 2 1 25 25 C 1.38235 * 119.99939 * 179.81082 * 24 23 2 26 26 C 1.38239 * 119.99830 * 0.40547 * 25 24 23 27 27 C 1.38228 * 120.00104 * 359.84869 * 26 25 24 28 28 C 1.38234 * 120.00481 * 359.96023 * 27 26 25 29 29 H 1.08992 * 109.47172 * 300.00077 * 1 2 3 30 30 H 1.09000 * 109.47129 * 60.00801 * 1 2 3 31 31 H 1.09006 * 109.46700 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47001 * 299.99184 * 3 2 1 33 33 H 1.08992 * 109.47289 * 59.99995 * 3 2 1 34 34 H 0.96693 * 113.99778 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47601 * 179.97438 * 5 2 1 36 36 H 1.09001 * 109.47389 * 60.00126 * 5 2 1 37 37 H 0.97002 * 119.99483 * 359.97438 * 6 5 2 38 38 H 1.08002 * 119.94389 * 359.97438 * 10 9 7 39 39 H 1.07996 * 120.05719 * 180.25468 * 11 10 9 40 40 H 0.97005 * 119.99884 * 180.02562 * 16 15 13 41 41 H 1.07995 * 120.05707 * 179.97438 * 21 12 11 42 42 H 1.08003 * 119.94258 * 179.97438 * 22 21 12 43 43 H 1.08001 * 119.99391 * 0.02562 * 24 23 2 44 44 H 1.07996 * 119.99864 * 180.23503 * 25 24 23 45 45 H 1.07995 * 119.99886 * 179.83748 * 26 25 24 46 46 H 1.08002 * 120.00125 * 179.97438 * 27 26 25 47 47 H 1.07993 * 120.00593 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 2.0400 -0.7211 1.2493 6 7 1.5516 -0.0305 2.4455 7 6 1.8767 -0.4912 3.6696 8 8 2.5750 -1.4802 3.7812 9 6 1.3849 0.2051 4.8750 10 6 0.5856 1.3472 4.7439 11 6 0.1244 1.9902 5.8539 12 6 0.4630 1.5105 7.1347 13 6 -0.0067 2.1763 8.2868 14 1 0.5325 2.0889 9.2185 15 6 -1.1735 2.9513 8.2220 16 7 -2.0101 2.7908 7.2314 17 14 -1.5317 4.2132 9.5519 18 1 -0.9399 5.5197 9.1669 19 1 -3.0007 4.3624 9.7099 20 1 -0.9391 3.7606 10.8362 21 6 1.2724 0.3643 7.2616 22 6 1.7237 -0.2755 6.1457 23 6 2.0324 -0.7106 -1.2303 24 6 2.8319 -1.8311 -1.1034 25 6 3.2894 -2.4851 -2.2321 26 6 2.9544 -2.0137 -3.4876 27 6 2.1593 -0.8901 -3.6145 28 6 1.6984 -0.2383 -2.4860 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.8622 2.3259 0.0002 35 1 3.1300 -0.7216 1.2492 36 1 1.6767 -1.7488 1.2494 37 1 0.9941 0.7583 2.3563 38 1 0.3306 1.7169 3.7617 39 1 -0.4955 2.8686 5.7518 40 1 -2.8171 3.3272 7.1864 41 1 1.5348 -0.0068 8.2412 42 1 2.3446 -1.1540 6.2419 43 1 3.0961 -2.1976 -0.1224 44 1 3.9109 -3.3628 -2.1329 45 1 3.3140 -2.5231 -4.3694 46 1 1.8979 -0.5215 -4.5955 47 1 1.0776 0.6397 -2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346323829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:02 Heat of formation + Delta-G solvation = -69.964687 kcal Electronic energy + Delta-G solvation = -28527.144617 eV Core-core repulsion = 24638.050198 eV Total energy + Delta-G solvation = -3889.094419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38164 -40.39692 -38.95439 -38.21076 -36.33117 -35.67176 -34.30900 -32.11070 -31.80527 -31.30344 -30.46540 -28.41163 -27.19888 -26.79285 -24.14605 -23.44042 -23.00545 -22.68605 -21.32721 -20.30485 -19.36775 -18.63983 -18.28343 -17.88998 -17.21323 -16.75226 -16.42165 -16.12407 -15.90754 -15.74379 -15.32542 -15.25456 -15.07111 -15.00602 -14.47209 -14.33034 -14.11747 -14.02838 -13.82628 -13.70071 -13.42042 -13.22309 -13.19003 -12.86295 -12.84865 -12.62843 -12.48519 -12.37073 -12.22018 -11.76940 -11.72713 -11.42674 -11.36065 -11.12611 -10.88783 -10.73394 -10.08031 -9.76679 -9.57961 -9.56805 -9.40734 -8.79526 -6.48229 0.43757 0.49836 0.54264 1.14556 1.39433 1.43807 1.53655 2.12754 2.17886 2.34817 2.78437 2.91150 3.25521 3.49609 3.68729 3.79682 3.90121 4.12195 4.17174 4.22165 4.29149 4.30853 4.34724 4.44072 4.52809 4.54995 4.62187 4.66152 4.72283 4.85083 4.89029 4.91941 4.97928 5.03295 5.14777 5.15558 5.18811 5.24377 5.29742 5.50506 5.58349 5.63963 5.67200 5.72728 5.81639 5.94079 5.99056 6.15603 6.22430 6.53539 6.68743 6.76992 6.88644 6.90760 7.43380 8.15773 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.002273 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.033572 B =12317.952499 C =12986.552410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.087 3.913 4 O -0.585 6.585 5 C 0.142 3.858 6 N -0.717 5.717 7 C 0.570 3.430 8 O -0.609 6.609 9 C -0.292 4.292 10 C -0.052 4.052 11 C -0.196 4.196 12 C 0.101 3.899 13 C -0.472 4.472 14 H 0.084 0.916 15 C 0.038 3.962 16 N -0.796 5.796 17 Si 0.988 3.012 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.259 1.259 21 C -0.253 4.253 22 C -0.034 4.034 23 C -0.063 4.063 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.394 0.606 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.405 0.595 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.298 0.702 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 1.926 -20.107 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C 0.009 3.991 4 O -0.392 6.392 5 C 0.019 3.981 6 N -0.370 5.370 7 C 0.364 3.636 8 O -0.494 6.494 9 C -0.297 4.297 10 C -0.071 4.071 11 C -0.215 4.215 12 C 0.097 3.903 13 C -0.499 4.499 14 H 0.102 0.898 15 C -0.181 4.181 16 N -0.420 5.420 17 Si 0.808 3.192 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.183 1.183 21 C -0.272 4.272 22 C -0.053 4.053 23 C -0.063 4.063 24 C -0.158 4.158 25 C -0.146 4.146 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.136 4.136 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.243 0.757 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.243 0.757 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.164 0.836 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.621 0.663 -20.166 20.242 hybrid contribution -0.144 0.931 0.944 1.334 sum 1.477 1.594 -19.222 19.345 Atomic orbital electron populations 1.21889 0.90956 1.03254 1.03650 1.19751 0.96907 0.94739 0.91268 1.22270 0.81480 0.94219 1.01137 1.86493 1.19796 1.35221 1.97720 1.21246 0.98402 0.95172 0.83312 1.45723 1.54262 1.32437 1.04608 1.18448 0.78467 0.82752 0.83983 1.90611 1.41837 1.29133 1.87772 1.19152 1.14306 1.04107 0.92107 1.20687 0.94733 0.93585 0.98103 1.21013 1.05883 1.02623 0.91994 1.18149 0.88662 0.89265 0.94181 1.20106 1.07786 1.24794 0.97214 0.89764 1.26917 0.94308 0.97685 0.99198 1.69757 1.08552 1.33129 1.30537 0.85105 0.78430 0.77745 0.77964 1.18239 1.18892 1.18278 1.20845 1.09637 0.99662 0.97070 1.20505 0.95601 0.97071 0.92168 1.19529 0.97467 0.95250 0.94088 1.21257 0.98786 0.96692 0.99042 1.21352 1.00177 1.00326 0.92770 1.21436 0.98707 0.97247 0.97535 1.21439 0.97500 0.95664 0.99303 1.21134 1.00616 1.00601 0.91266 0.91661 0.89296 0.92117 0.90656 0.93040 0.75702 0.92905 0.93088 0.75658 0.85931 0.86581 0.89121 0.87875 0.88194 0.87412 0.85212 0.84078 0.83609 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.11 71.98 0.58 -1.97 16 2 C -0.03 -0.57 0.45 -52.93 -0.02 -0.59 16 3 C 0.09 1.63 5.56 71.98 0.40 2.03 16 4 O -0.58 -12.84 12.61 -148.98 -1.88 -14.72 16 5 C 0.14 4.31 3.08 86.38 0.27 4.57 16 6 N -0.72 -23.96 4.91 -466.16 -2.29 -26.25 16 7 C 0.57 24.87 7.76 86.73 0.67 25.55 16 8 O -0.61 -30.49 16.32 -3.98 -0.06 -30.56 16 9 C -0.29 -13.53 5.89 -19.93 -0.12 -13.64 16 10 C -0.05 -2.26 9.47 22.25 0.21 -2.05 16 11 C -0.20 -9.55 8.64 22.47 0.19 -9.36 16 12 C 0.10 5.22 5.58 -21.28 -0.12 5.10 16 13 C -0.47 -23.69 9.04 23.46 0.21 -23.47 16 14 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 15 C 0.04 1.75 5.14 85.35 0.44 2.19 16 16 N -0.80 -37.40 10.95 21.87 0.24 -37.16 16 17 Si 0.99 34.32 29.60 68.60 2.03 36.35 16 18 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 19 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 20 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 21 C -0.25 -12.67 9.73 22.47 0.22 -12.45 16 22 C -0.03 -1.68 9.52 22.25 0.21 -1.46 16 23 C -0.06 -1.38 4.41 -19.86 -0.09 -1.46 16 24 C -0.14 -3.43 8.98 22.27 0.20 -3.23 16 25 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 26 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 27 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 28 C -0.12 -2.05 8.71 22.27 0.19 -1.86 16 29 H 0.06 1.20 6.86 -2.39 -0.02 1.18 16 30 H 0.09 1.16 7.39 -2.39 -0.02 1.14 16 31 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.08 1.02 7.39 -2.39 -0.02 1.00 16 33 H 0.05 0.95 6.86 -2.39 -0.02 0.94 16 34 H 0.39 5.29 9.12 -74.06 -0.68 4.62 16 35 H 0.05 1.85 7.04 -2.39 -0.02 1.83 16 36 H 0.05 1.66 7.53 -2.39 -0.02 1.64 16 37 H 0.41 11.51 4.16 -92.71 -0.39 11.13 16 38 H 0.12 4.27 6.37 -2.91 -0.02 4.25 16 39 H 0.12 5.68 6.16 -2.91 -0.02 5.66 16 40 H 0.30 12.35 8.29 -92.70 -0.77 11.58 16 41 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 42 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 43 H 0.11 2.96 5.89 -2.91 -0.02 2.94 16 44 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 47 H 0.14 1.74 7.10 -2.91 -0.02 1.72 16 Total: -1.00 -67.01 382.00 2.12 -64.89 By element: Atomic # 1 Polarization: 45.68 SS G_CDS: -0.04 Total: 45.63 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 4.13 Total: -38.19 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -2.05 Total: -63.40 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.94 Total: -45.28 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Total: -67.01 2.12 -64.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346323829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.076 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds