Wall clock time and date at job start Tue Mar 31 2020 22:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47249 * 2 1 4 4 O 1.42896 * 109.47444 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47129 * 239.99883 * 2 1 3 6 6 N 1.46501 * 109.46742 * 60.00067 * 5 2 1 7 7 C 1.34778 * 119.99604 * 180.02562 * 6 5 2 8 8 O 1.21589 * 120.00023 * 359.97438 * 7 6 5 9 9 C 1.47644 * 120.00043 * 180.02562 * 7 6 5 10 10 C 1.40009 * 119.89322 * 359.72342 * 9 7 6 11 11 C 1.36322 * 120.10783 * 179.72050 * 10 9 7 12 12 C 1.40891 * 119.88387 * 0.57431 * 11 10 9 13 13 C 1.41114 * 120.09825 * 179.67654 * 12 11 10 14 14 H 1.07997 * 120.00119 * 204.66085 * 13 12 11 15 15 C 1.40231 * 120.00024 * 24.65345 * 13 12 11 16 16 N 1.30640 * 119.99931 * 17.86579 * 15 13 12 17 17 Si 1.86801 * 120.00024 * 197.86320 * 15 13 12 18 18 H 1.48498 * 109.46898 * 60.00174 * 17 15 13 19 19 H 1.48499 * 109.46800 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46936 * 300.00597 * 17 15 13 21 21 C 1.40880 * 119.79678 * 359.70186 * 12 11 10 22 22 C 1.36314 * 119.89257 * 359.97438 * 21 12 11 23 23 C 1.50701 * 109.47302 * 119.99497 * 2 1 3 24 24 C 1.38232 * 120.00435 * 300.00348 * 23 2 1 25 25 C 1.38238 * 120.00238 * 180.02562 * 24 23 2 26 26 C 1.38236 * 119.99673 * 359.95517 * 25 24 23 27 27 C 1.38235 * 120.00076 * 0.27895 * 26 25 24 28 28 C 1.38233 * 120.00048 * 359.53123 * 27 26 25 29 29 H 1.09004 * 109.46860 * 300.00013 * 1 2 3 30 30 H 1.09000 * 109.47199 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47091 * 300.00154 * 3 2 1 33 33 H 1.09001 * 109.47377 * 59.99686 * 3 2 1 34 34 H 0.96701 * 114.00182 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.47158 * 179.97438 * 5 2 1 36 36 H 1.08994 * 109.47095 * 300.00157 * 5 2 1 37 37 H 0.96992 * 120.00628 * 359.97438 * 6 5 2 38 38 H 1.08008 * 119.94691 * 0.02562 * 10 9 7 39 39 H 1.07991 * 120.05543 * 180.25374 * 11 10 9 40 40 H 0.97006 * 120.00459 * 179.97438 * 16 15 13 41 41 H 1.08003 * 120.05091 * 179.97438 * 21 12 11 42 42 H 1.08002 * 119.94800 * 180.02562 * 22 21 12 43 43 H 1.08000 * 119.99818 * 359.97438 * 24 23 2 44 44 H 1.07997 * 119.99827 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.99797 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.99845 * 179.72501 * 27 26 25 47 47 H 1.07996 * 119.99878 * 180.21036 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 2.0400 -0.7213 -1.2492 6 7 1.5516 -0.0306 -2.4453 7 6 1.8768 -0.4914 -3.6695 8 8 2.5758 -1.4800 -3.7810 9 6 1.3851 0.2049 -4.8750 10 6 0.5765 1.3403 -4.7440 11 6 0.1248 1.9899 -5.8541 12 6 0.4631 1.5098 -7.1347 13 6 -0.0077 2.1748 -8.2869 14 1 -0.1062 1.6371 -9.2183 15 6 -0.3476 3.5338 -8.2225 16 7 0.0840 4.2688 -7.2324 17 14 -1.4174 4.2930 -9.5523 18 1 -2.7284 3.5967 -9.5904 19 1 -1.6293 5.7325 -9.2552 20 1 -0.7444 4.1535 -10.8686 21 6 1.2723 0.3636 -7.2614 22 6 1.7246 -0.2754 -6.1455 23 6 2.0324 -0.7103 1.2305 24 6 1.6985 -0.2380 2.4860 25 6 2.1598 -0.8893 3.6147 26 6 2.9542 -2.0134 3.4879 27 6 3.2921 -2.4829 2.2323 28 6 2.8276 -1.8339 1.1037 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.8623 2.3260 0.0002 35 1 3.1300 -0.7209 -1.2494 36 1 1.6767 -1.7489 -1.2492 37 1 0.9937 0.7578 -2.3564 38 1 0.3141 1.7050 -3.7618 39 1 -0.4955 2.8680 -5.7520 40 1 -0.1508 5.2089 -7.1880 41 1 1.5338 -0.0082 -8.2412 42 1 2.3454 -1.1540 -6.2416 43 1 1.0778 0.6403 2.5851 44 1 1.8992 -0.5201 4.5956 45 1 3.3150 -2.5220 4.3697 46 1 3.9165 -3.3585 2.1333 47 1 3.0889 -2.2027 0.1228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346323835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:07 Heat of formation + Delta-G solvation = -52.264982 kcal Electronic energy + Delta-G solvation = -28531.929450 eV Core-core repulsion = 24643.602548 eV Total energy + Delta-G solvation = -3888.326902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.32975 -38.91710 -37.53213 -36.92170 -35.25480 -33.87433 -32.97652 -31.13754 -30.27564 -29.59719 -29.43689 -26.99193 -26.23836 -25.37326 -23.04437 -22.39827 -21.65869 -20.92061 -19.68644 -19.34156 -17.53795 -17.42465 -17.30745 -16.77627 -15.63426 -15.45160 -15.26995 -14.93856 -14.80671 -14.46180 -14.06045 -13.98611 -13.77358 -13.40886 -13.37747 -13.09293 -13.03577 -12.71955 -12.46416 -12.35727 -12.14989 -12.07477 -11.87802 -11.55615 -11.43780 -11.30590 -11.26010 -10.99751 -10.89361 -10.64352 -10.54091 -10.08502 -10.03844 -9.56684 -9.35701 -9.00380 -8.94984 -8.78921 -8.52398 -7.72951 -7.54500 -7.04575 -4.60936 1.27145 1.32202 2.24253 2.91648 2.93006 2.97435 3.02732 3.68706 3.72759 3.75057 3.89231 4.10513 4.40694 4.56972 4.66194 4.82420 4.88296 4.91740 5.01949 5.16881 5.29419 5.35542 5.37337 5.46887 5.56239 5.62736 5.65376 5.86281 5.89991 5.94465 5.96486 6.01648 6.04735 6.21946 6.32090 6.37553 6.42425 6.53961 6.75965 6.81837 6.90315 6.95735 7.06775 7.12896 7.42698 7.55283 7.64929 7.78506 7.84986 8.06444 8.25716 8.38774 8.62323 8.74595 9.11272 9.87479 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.002280 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.510132 B =12278.903914 C =12987.597015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.089 3.911 4 O -0.562 6.562 5 C 0.137 3.863 6 N -0.739 5.739 7 C 0.572 3.428 8 O -0.575 6.575 9 C -0.282 4.282 10 C -0.063 4.063 11 C -0.178 4.178 12 C 0.128 3.872 13 C -0.443 4.443 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.773 5.773 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.238 4.238 22 C -0.022 4.022 23 C -0.051 4.051 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.113 4.113 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.378 0.622 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.393 0.607 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 -1.928 17.995 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C 0.011 3.989 4 O -0.366 6.366 5 C 0.013 3.987 6 N -0.393 5.393 7 C 0.366 3.634 8 O -0.457 6.457 9 C -0.287 4.287 10 C -0.082 4.082 11 C -0.197 4.197 12 C 0.125 3.875 13 C -0.471 4.471 14 H 0.102 0.898 15 C -0.147 4.147 16 N -0.396 5.396 17 Si 0.737 3.263 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.187 1.187 21 C -0.258 4.258 22 C -0.041 4.041 23 C -0.052 4.052 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.135 4.135 28 C -0.131 4.131 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.225 0.775 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.229 0.771 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.326 -3.024 18.018 18.273 hybrid contribution -0.594 1.557 -0.398 1.714 sum -0.268 -1.467 17.619 17.682 Atomic orbital electron populations 1.21869 0.92258 1.03300 1.02391 1.19791 0.95986 0.94387 0.93227 1.22182 0.81908 0.95017 0.99834 1.86518 1.19003 1.33491 1.97624 1.21233 0.99697 0.95218 0.82525 1.45918 1.55380 1.32608 1.05360 1.18557 0.78651 0.83186 0.82961 1.90632 1.40140 1.27784 1.87148 1.18904 1.14626 1.03344 0.91797 1.20440 0.96667 0.94220 0.96914 1.20966 1.04916 1.02206 0.91647 1.17780 0.86702 0.89921 0.93110 1.19811 1.35868 0.94156 0.97241 0.89761 1.26095 0.94193 0.97530 0.96843 1.69735 1.32670 1.08034 1.29168 0.86264 0.80948 0.78021 0.81056 1.18475 1.20075 1.18660 1.20716 1.06393 1.02094 0.96587 1.20366 0.95599 0.96661 0.91517 1.19480 0.97080 0.95175 0.93429 1.20884 1.00567 0.99966 0.91923 1.21054 0.98484 0.96148 0.98218 1.21107 0.99086 0.97080 0.97345 1.21147 0.99858 0.99960 0.92536 1.21240 0.97153 0.95400 0.99263 0.91960 0.91551 0.91314 0.93009 0.93476 0.77524 0.90776 0.91921 0.77051 0.89607 0.86222 0.90218 0.88393 0.88098 0.86443 0.86367 0.86430 0.86161 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.11 37.16 0.30 -1.10 16 2 C -0.03 -0.38 0.45 -155.66 -0.07 -0.45 16 3 C 0.09 0.95 5.56 37.16 0.21 1.15 16 4 O -0.56 -6.69 12.61 -35.23 -0.44 -7.13 16 5 C 0.14 2.04 3.08 -4.04 -0.01 2.03 16 6 N -0.74 -12.43 4.91 -61.31 -0.30 -12.73 16 7 C 0.57 12.31 7.76 -12.42 -0.10 12.21 16 8 O -0.58 -13.96 16.32 5.29 0.09 -13.87 16 9 C -0.28 -6.46 5.89 -104.73 -0.62 -7.07 16 10 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 11 C -0.18 -4.31 8.64 -39.27 -0.34 -4.65 16 12 C 0.13 3.25 5.58 -106.80 -0.60 2.65 16 13 C -0.44 -10.95 9.04 -37.74 -0.34 -11.30 16 14 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 15 C 0.07 1.72 5.14 -17.31 -0.09 1.64 16 16 N -0.77 -18.32 10.95 55.56 0.61 -17.71 16 17 Si 0.91 17.13 29.60 -169.99 -5.03 12.10 16 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 21 C -0.24 -5.78 9.73 -39.28 -0.38 -6.16 16 22 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 23 C -0.05 -0.59 4.41 -104.62 -0.46 -1.05 16 24 C -0.12 -1.16 8.71 -39.58 -0.34 -1.51 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.13 -1.22 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 28 C -0.11 -1.36 8.98 -39.58 -0.36 -1.71 16 29 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 30 H 0.07 0.67 6.86 -51.93 -0.36 0.31 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.56 6.86 -51.93 -0.36 0.20 16 33 H 0.05 0.41 7.39 -51.93 -0.38 0.03 16 34 H 0.38 2.98 9.12 45.56 0.42 3.39 16 35 H 0.07 1.25 7.05 -51.93 -0.37 0.88 16 36 H 0.06 0.97 7.51 -51.93 -0.39 0.58 16 37 H 0.39 5.88 4.16 -40.82 -0.17 5.71 16 38 H 0.09 1.58 6.37 -52.48 -0.33 1.24 16 39 H 0.12 2.92 6.16 -52.49 -0.32 2.60 16 40 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 41 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 42 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 43 H 0.12 0.98 7.10 -52.49 -0.37 0.61 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 47 H 0.13 1.61 5.90 -52.49 -0.31 1.30 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -30.26 382.00 -9.86 -40.12 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -5.39 Total: 16.23 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -5.14 Total: -22.76 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.31 Total: -30.44 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.36 Total: -21.00 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.26 -9.86 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346323835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.147 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds