Wall clock time and date at job start Tue Mar 31 2020 22:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47249 * 2 1 4 4 O 1.42896 * 109.47444 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47129 * 239.99883 * 2 1 3 6 6 N 1.46501 * 109.46742 * 60.00067 * 5 2 1 7 7 C 1.34778 * 119.99604 * 180.02562 * 6 5 2 8 8 O 1.21589 * 120.00023 * 359.97438 * 7 6 5 9 9 C 1.47644 * 120.00043 * 180.02562 * 7 6 5 10 10 C 1.40009 * 119.89322 * 359.72342 * 9 7 6 11 11 C 1.36322 * 120.10783 * 179.72050 * 10 9 7 12 12 C 1.40891 * 119.88387 * 0.57431 * 11 10 9 13 13 C 1.41114 * 120.09825 * 179.67654 * 12 11 10 14 14 H 1.07997 * 120.00119 * 204.66085 * 13 12 11 15 15 C 1.40231 * 120.00024 * 24.65345 * 13 12 11 16 16 N 1.30640 * 119.99931 * 17.86579 * 15 13 12 17 17 Si 1.86801 * 120.00024 * 197.86320 * 15 13 12 18 18 H 1.48498 * 109.46898 * 60.00174 * 17 15 13 19 19 H 1.48499 * 109.46800 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46936 * 300.00597 * 17 15 13 21 21 C 1.40880 * 119.79678 * 359.70186 * 12 11 10 22 22 C 1.36314 * 119.89257 * 359.97438 * 21 12 11 23 23 C 1.50701 * 109.47302 * 119.99497 * 2 1 3 24 24 C 1.38232 * 120.00435 * 300.00348 * 23 2 1 25 25 C 1.38238 * 120.00238 * 180.02562 * 24 23 2 26 26 C 1.38236 * 119.99673 * 359.95517 * 25 24 23 27 27 C 1.38235 * 120.00076 * 0.27895 * 26 25 24 28 28 C 1.38233 * 120.00048 * 359.53123 * 27 26 25 29 29 H 1.09004 * 109.46860 * 300.00013 * 1 2 3 30 30 H 1.09000 * 109.47199 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47091 * 300.00154 * 3 2 1 33 33 H 1.09001 * 109.47377 * 59.99686 * 3 2 1 34 34 H 0.96701 * 114.00182 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.47158 * 179.97438 * 5 2 1 36 36 H 1.08994 * 109.47095 * 300.00157 * 5 2 1 37 37 H 0.96992 * 120.00628 * 359.97438 * 6 5 2 38 38 H 1.08008 * 119.94691 * 0.02562 * 10 9 7 39 39 H 1.07991 * 120.05543 * 180.25374 * 11 10 9 40 40 H 0.97006 * 120.00459 * 179.97438 * 16 15 13 41 41 H 1.08003 * 120.05091 * 179.97438 * 21 12 11 42 42 H 1.08002 * 119.94800 * 180.02562 * 22 21 12 43 43 H 1.08000 * 119.99818 * 359.97438 * 24 23 2 44 44 H 1.07997 * 119.99827 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.99797 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.99845 * 179.72501 * 27 26 25 47 47 H 1.07996 * 119.99878 * 180.21036 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 2.0400 -0.7213 -1.2492 6 7 1.5516 -0.0306 -2.4453 7 6 1.8768 -0.4914 -3.6695 8 8 2.5758 -1.4800 -3.7810 9 6 1.3851 0.2049 -4.8750 10 6 0.5765 1.3403 -4.7440 11 6 0.1248 1.9899 -5.8541 12 6 0.4631 1.5098 -7.1347 13 6 -0.0077 2.1748 -8.2869 14 1 -0.1062 1.6371 -9.2183 15 6 -0.3476 3.5338 -8.2225 16 7 0.0840 4.2688 -7.2324 17 14 -1.4174 4.2930 -9.5523 18 1 -2.7284 3.5967 -9.5904 19 1 -1.6293 5.7325 -9.2552 20 1 -0.7444 4.1535 -10.8686 21 6 1.2723 0.3636 -7.2614 22 6 1.7246 -0.2754 -6.1455 23 6 2.0324 -0.7103 1.2305 24 6 1.6985 -0.2380 2.4860 25 6 2.1598 -0.8893 3.6147 26 6 2.9542 -2.0134 3.4879 27 6 3.2921 -2.4829 2.2323 28 6 2.8276 -1.8339 1.1037 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.8623 2.3260 0.0002 35 1 3.1300 -0.7209 -1.2494 36 1 1.6767 -1.7489 -1.2492 37 1 0.9937 0.7578 -2.3564 38 1 0.3141 1.7050 -3.7618 39 1 -0.4955 2.8680 -5.7520 40 1 -0.1508 5.2089 -7.1880 41 1 1.5338 -0.0082 -8.2412 42 1 2.3454 -1.1540 -6.2416 43 1 1.0778 0.6403 2.5851 44 1 1.8992 -0.5201 4.5956 45 1 3.3150 -2.5220 4.3697 46 1 3.9165 -3.3585 2.1333 47 1 3.0889 -2.2027 0.1228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346323835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:06 Heat of formation + Delta-G solvation = -69.928522 kcal Electronic energy + Delta-G solvation = -28532.695399 eV Core-core repulsion = 24643.602548 eV Total energy + Delta-G solvation = -3889.092851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38116 -40.39605 -38.95343 -38.21146 -36.33348 -35.67120 -34.30824 -32.11008 -31.80456 -31.30219 -30.46395 -28.40968 -27.19748 -26.79378 -24.14500 -23.43992 -23.00450 -22.68551 -21.32605 -20.30457 -19.36583 -18.63855 -18.28892 -17.88909 -17.21146 -16.75454 -16.41652 -16.12393 -15.90780 -15.74604 -15.32816 -15.25552 -15.07066 -15.00698 -14.46048 -14.33085 -14.11852 -14.02611 -13.85141 -13.65050 -13.47047 -13.21122 -13.16922 -12.85001 -12.83820 -12.67307 -12.45971 -12.35753 -12.22757 -11.79278 -11.72739 -11.42597 -11.36063 -11.11597 -10.89175 -10.73300 -10.07963 -9.76647 -9.57845 -9.56779 -9.40588 -8.79335 -6.48057 0.44146 0.49887 0.54274 1.14666 1.39464 1.44826 1.52509 2.12476 2.18261 2.34934 2.78749 2.91152 3.25331 3.49607 3.68847 3.79690 3.90298 4.12208 4.17209 4.22243 4.29198 4.30873 4.34725 4.44229 4.52716 4.54879 4.62332 4.66211 4.72345 4.85287 4.89201 4.92008 4.97974 5.03184 5.14900 5.15676 5.18832 5.24620 5.29836 5.50601 5.58387 5.63988 5.67250 5.72750 5.81744 5.94158 5.99008 6.15626 6.22533 6.53472 6.68803 6.77016 6.88690 6.89749 7.43460 8.15794 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.002280 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.510132 B =12278.903914 C =12987.597015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.086 3.914 4 O -0.585 6.585 5 C 0.142 3.858 6 N -0.718 5.718 7 C 0.570 3.430 8 O -0.609 6.609 9 C -0.292 4.292 10 C -0.052 4.052 11 C -0.196 4.196 12 C 0.101 3.899 13 C -0.472 4.472 14 H 0.085 0.915 15 C 0.039 3.961 16 N -0.797 5.797 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.263 1.263 20 H -0.260 1.260 21 C -0.253 4.253 22 C -0.034 4.034 23 C -0.063 4.063 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.128 4.128 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.393 0.607 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.405 0.595 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.298 0.702 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.130 0.870 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 -0.163 20.085 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C 0.008 3.992 4 O -0.393 6.393 5 C 0.019 3.981 6 N -0.370 5.370 7 C 0.363 3.637 8 O -0.494 6.494 9 C -0.297 4.297 10 C -0.071 4.071 11 C -0.215 4.215 12 C 0.097 3.903 13 C -0.500 4.500 14 H 0.103 0.897 15 C -0.181 4.181 16 N -0.420 5.420 17 Si 0.807 3.193 18 H -0.182 1.182 19 H -0.187 1.187 20 H -0.184 1.184 21 C -0.272 4.272 22 C -0.053 4.053 23 C -0.063 4.063 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.158 4.158 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.243 0.757 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.243 0.757 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.159 0.841 46 H 0.148 0.852 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.074 -1.234 20.150 20.216 hybrid contribution -0.077 0.973 -0.953 1.364 sum -1.152 -0.261 19.197 19.234 Atomic orbital electron populations 1.21888 0.90831 1.03317 1.03673 1.19754 0.97012 0.94630 0.91270 1.22279 0.81461 0.94327 1.01096 1.86489 1.19851 1.35215 1.97716 1.21248 0.98352 0.95226 0.83306 1.45723 1.54248 1.32454 1.04610 1.18452 0.78452 0.82765 0.83984 1.90612 1.41732 1.29235 1.87775 1.19151 1.14678 1.03747 0.92109 1.20688 0.95186 0.93138 0.98102 1.21015 1.05832 1.02687 0.91994 1.18142 0.87353 0.90580 0.94175 1.20084 1.37215 0.95411 0.97247 0.89716 1.26915 0.94761 0.97226 0.99177 1.69749 1.32868 1.08856 1.30513 0.85163 0.78746 0.77531 0.77873 1.18215 1.18697 1.18418 1.20843 1.06887 1.02418 0.97077 1.20504 0.95847 0.96828 0.92168 1.19526 0.97518 0.95186 0.94085 1.21132 1.00614 1.00610 0.91271 1.21441 0.97525 0.95636 0.99299 1.21438 0.98704 0.97255 0.97538 1.21352 1.00103 1.00392 0.92771 1.21257 0.98797 0.96692 0.99043 0.89333 0.91579 0.91988 0.93134 0.90663 0.75726 0.93059 0.92912 0.75662 0.85932 0.86579 0.89114 0.87862 0.88193 0.84260 0.83614 0.84079 0.85210 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.11 71.98 0.58 -1.90 16 2 C -0.03 -0.57 0.45 -52.93 -0.02 -0.59 16 3 C 0.09 1.66 5.56 71.98 0.40 2.06 16 4 O -0.59 -13.28 12.61 -148.98 -1.88 -15.16 16 5 C 0.14 4.30 3.08 86.38 0.27 4.57 16 6 N -0.72 -23.96 4.91 -466.15 -2.29 -26.24 16 7 C 0.57 24.87 7.76 86.73 0.67 25.54 16 8 O -0.61 -30.49 16.32 -4.00 -0.07 -30.56 16 9 C -0.29 -13.53 5.89 -19.93 -0.12 -13.65 16 10 C -0.05 -2.27 9.47 22.25 0.21 -2.06 16 11 C -0.20 -9.56 8.64 22.47 0.19 -9.37 16 12 C 0.10 5.22 5.58 -21.28 -0.12 5.10 16 13 C -0.47 -23.70 9.04 23.46 0.21 -23.49 16 14 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 15 C 0.04 1.76 5.14 85.35 0.44 2.20 16 16 N -0.80 -37.40 10.95 21.87 0.24 -37.16 16 17 Si 0.99 34.28 29.60 68.60 2.03 36.31 16 18 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 19 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 21 C -0.25 -12.67 9.73 22.47 0.22 -12.45 16 22 C -0.03 -1.68 9.52 22.25 0.21 -1.47 16 23 C -0.06 -1.37 4.41 -19.87 -0.09 -1.46 16 24 C -0.12 -2.05 8.71 22.27 0.19 -1.86 16 25 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 26 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 27 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 28 C -0.14 -3.43 8.98 22.27 0.20 -3.23 16 29 H 0.09 1.12 7.39 -2.39 -0.02 1.10 16 30 H 0.07 1.17 6.86 -2.39 -0.02 1.15 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 0.97 6.86 -2.39 -0.02 0.96 16 33 H 0.08 1.04 7.39 -2.39 -0.02 1.03 16 34 H 0.39 5.66 9.12 -74.06 -0.68 4.99 16 35 H 0.05 1.81 7.05 -2.39 -0.02 1.79 16 36 H 0.05 1.70 7.51 -2.39 -0.02 1.68 16 37 H 0.41 11.51 4.16 -92.71 -0.39 11.13 16 38 H 0.12 4.27 6.37 -2.91 -0.02 4.25 16 39 H 0.12 5.68 6.16 -2.92 -0.02 5.67 16 40 H 0.30 12.38 8.29 -92.70 -0.77 11.61 16 41 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 42 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 43 H 0.14 1.74 7.10 -2.91 -0.02 1.72 16 44 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 47 H 0.11 2.96 5.90 -2.91 -0.02 2.94 16 Total: -1.00 -66.98 382.00 2.12 -64.86 By element: Atomic # 1 Polarization: 46.12 SS G_CDS: -0.04 Total: 46.07 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 4.13 Total: -38.12 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -2.05 Total: -63.41 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.94 Total: -45.71 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 2.03 Total: 36.31 kcal Total: -66.98 2.12 -64.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346323835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.073 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds